Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq1063 129 2e-25 seq1382 100 8e-17 seq1042 80.6 8e-11 seq1024 80.6 8e-11 >seq1063 Length=431445 Score = 129 bits (142), Expect = 2e-25 Identities = 235/341 (69%), Gaps = 21/341 (6%) Strand=Plus/Minus Query 41693 GATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAG 41752 |||| |||||| || || ||||| || || ||| ||| |||| | || || | ||| || Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166 Query 41753 CACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCC--GGCGTATTTGGTGGGA 41810 ||||| || |||||||||| ||||||||| | ||||| || || ||||| || | Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGGCCCTA 54106 Query 41811 GTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTG 41870 || ||||||| ||| | ||||| || | |||| | || | |||| Sbjct 54105 GTA---------CTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTG 54055 Query 41871 AAGAGGTTTCACAG--AACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTT-ACAATA 41927 || | | || | | | | || || || ||| ||||||||||||||| |||||| Sbjct 54054 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 53997 Query 41928 -----TTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAA 41982 |||| |||||||| || ||||| | || | ||||||||||||||||| || || Sbjct 53996 GAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAA 53937 Query 41983 TAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTG 42023 || || ||| | | |||||||| | ||||| ||||||| Sbjct 53936 CAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896 >seq1382 Length=172696 Score = 100 bits (110), Expect = 8e-17 Identities = 229/337 (68%), Gaps = 17/337 (5%) Strand=Plus/Plus Query 41753 CACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCC--GGCGTATTTGGTGGGA 41810 ||||| || ||||||||||| || ||||| | ||| | || || ||||| || || Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556 Query 41811 GTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTG 41870 | ||| ||||||||| ||| | |||| || || | || | || || |||| Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616 Query 41871 AAGAGGTTTCA-CAGAACTATGGTTACAAGTTTGGTCAAGA----GGAAGAGACTTACAA 41925 || | | || || | | ||||||| || |||||||| ||||||||||||||| Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675 Query 41926 TA-----TTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTT 41980 || |||| |||||||| || ||||| | || | ||| ||||||||||||| || Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735 Query 41981 AATAATTCCCG-TA-GTCTT--CATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTG 42036 || || || || || |||| ||| || | || || ||||| ||| | ||||| || Sbjct 123736 AACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCTG 123795 Query 42037 GTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAAC 42073 | | | || | || | ||||||||||||||| Sbjct 123796 GGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAAC 123832 >seq1042 Length=564079 Score = 80.6 bits (88), Expect = 8e-11 Identities = 83/109 (76%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 41688 TTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGG 41747 |||| |||| |||||| || || || || || ||| ||| |||| | || ||||||| Sbjct 550847 TTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATGATTGTATTCCAGG 550788 Query 41748 CTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGG 41796 |||||||||| || |||||||| || ||| ||||| | ||| | || || Sbjct 550787 CTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCTGG 550739 >seq1024 Length=717246 Score = 80.6 bits (88), Expect = 8e-11 Identities = 71/89 (80%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 42125 ATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAG 42184 || ||||| |||||||| || | |||||||| |||||||| | || || |||||||| Sbjct 156785 ATTAACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAA 156844 Query 42185 CGGAACGCACACAACTTCCCGCTTGACCT 42213 || || || ||||||||||| || ||||| Sbjct 156845 CGTAATGCTCACAACTTCCCTCTAGACCT 156873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146201796227336