Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_020865.1
Length=45730
Score E
Sequences producing significant alignments: (Bits) Value
seq1063 129 2e-25
seq1382 100 8e-17
seq1042 80.6 8e-11
seq1024 80.6 8e-11
>seq1063
Length=431445
Score = 129 bits (142), Expect = 2e-25
Identities = 235/341 (69%), Gaps = 21/341 (6%)
Strand=Plus/Minus
Query 41693 GATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAG 41752
|||| |||||| || || ||||| || || ||| ||| |||| | || || | ||| ||
Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166
Query 41753 CACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCC--GGCGTATTTGGTGGGA 41810
||||| || |||||||||| ||||||||| | ||||| || || ||||| || |
Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGGCCCTA 54106
Query 41811 GTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTG 41870
|| ||||||| ||| | ||||| || | |||| | || | ||||
Sbjct 54105 GTA---------CTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTG 54055
Query 41871 AAGAGGTTTCACAG--AACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTT-ACAATA 41927
|| | | || | | | | || || || ||| ||||||||||||||| ||||||
Sbjct 54054 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 53997
Query 41928 -----TTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAA 41982
|||| |||||||| || ||||| | || | ||||||||||||||||| || ||
Sbjct 53996 GAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAA 53937
Query 41983 TAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTG 42023
|| || ||| | | |||||||| | ||||| |||||||
Sbjct 53936 CAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896
>seq1382
Length=172696
Score = 100 bits (110), Expect = 8e-17
Identities = 229/337 (68%), Gaps = 17/337 (5%)
Strand=Plus/Plus
Query 41753 CACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCC--GGCGTATTTGGTGGGA 41810
||||| || ||||||||||| || ||||| | ||| | || || ||||| || ||
Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556
Query 41811 GTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTG 41870
| ||| ||||||||| ||| | |||| || || | || | || || ||||
Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616
Query 41871 AAGAGGTTTCA-CAGAACTATGGTTACAAGTTTGGTCAAGA----GGAAGAGACTTACAA 41925
|| | | || || | | ||||||| || |||||||| |||||||||||||||
Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675
Query 41926 TA-----TTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTT 41980
|| |||| |||||||| || ||||| | || | ||| ||||||||||||| ||
Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735
Query 41981 AATAATTCCCG-TA-GTCTT--CATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTG 42036
|| || || || || |||| ||| || | || || ||||| ||| | ||||| ||
Sbjct 123736 AACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCTG 123795
Query 42037 GTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAAC 42073
| | | || | || | |||||||||||||||
Sbjct 123796 GGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAAC 123832
>seq1042
Length=564079
Score = 80.6 bits (88), Expect = 8e-11
Identities = 83/109 (76%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 41688 TTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGG 41747
|||| |||| |||||| || || || || || ||| ||| |||| | || |||||||
Sbjct 550847 TTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATGATTGTATTCCAGG 550788
Query 41748 CTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGG 41796
|||||||||| || |||||||| || ||| ||||| | ||| | || ||
Sbjct 550787 CTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCTGG 550739
>seq1024
Length=717246
Score = 80.6 bits (88), Expect = 8e-11
Identities = 71/89 (80%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 42125 ATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAG 42184
|| ||||| |||||||| || | |||||||| |||||||| | || || ||||||||
Sbjct 156785 ATTAACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAA 156844
Query 42185 CGGAACGCACACAACTTCCCGCTTGACCT 42213
|| || || ||||||||||| || |||||
Sbjct 156845 CGTAATGCTCACAACTTCCCTCTAGACCT 156873
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146201796227336
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |