Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_020867.1
Length=44892
Score E
Sequences producing significant alignments: (Bits) Value
seq1063 116 1e-21
seq10 107 6e-19
seq1382 102 2e-17
seq1042 98.7 3e-16
>seq1063
Length=431445
Score = 116 bits (128), Expect = 1e-21
Identities = 234/341 (69%), Gaps = 21/341 (6%)
Strand=Plus/Minus
Query 42746 CAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTG 42805
||||||| |||||| |||| || || ||||| ||| |||||||| | || || | ||| |
Sbjct 54227 CAGATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAG 54168
Query 42806 AACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCC--GGCGTATTTGGTGG 42863
|||| ||||| |||||||||| || || ||| | ||||| || || ||||| ||
Sbjct 54167 AACACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGGC-- 54110
Query 42864 GTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGAC 42923
| | || || ||||||||| | ||| ||||| | | | | |||| ||
Sbjct 54109 --CCTAGTACT-----ATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCAC 54057
Query 42924 TGAAAACGAAAGC-CAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACT------T 42976
|||||||||| | | | | | || |||||| ||||||| |||||| |
Sbjct 54056 TGAAAACGAATCCGCGTTAGCA-AGTGACTGATTCGGTAAAGAGGAAGAGACTTTACAAT 53998
Query 42977 ATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT- 43035
| | ||||| || || |||||||| || | || | |||||||||||||| | ||||
Sbjct 53997 AGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGC-TAGTTTC 53939
Query 43036 AATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCC 43076
|| || ||| ||||| || ||||| | || || |||||
Sbjct 53938 AACAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCC 53898
>seq10
Length=33665772
Score = 107 bits (118), Expect = 6e-19
Identities = 201/292 (69%), Gaps = 19/292 (7%)
Strand=Plus/Plus
Query 42746 CAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTG 42805
||||||| |||||| | || || || ||||| |||||||||||| | || |||||||| |
Sbjct 4332893 CAGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAG 4332952
Query 42806 AACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTG--CCGGCGTATTTGGTGG 42863
|||| ||||| |||||||||| || || ||| | ||||| | | || |||| | |
Sbjct 4332953 AACACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTAT----TCG 4333008
Query 42864 GTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGAC 42923
| | | || ||||||||||| | |||| ||||| | | | | |||| ||
Sbjct 4333009 GCCCTAGT-----ACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCAC 4333063
Query 42924 TGAAAACGAAAGC-CAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACT------T 42976
|||||||||| | | | | | || |||||| ||||||| |||||| |
Sbjct 4333064 TGAAAACGAATCCGCGTTAGCA-AGTGACTGATTCGGTAAAGAGGAAGAGACTTTACAAT 4333122
Query 42977 ATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGC 43028
| | |||||| | || |||||||| || | || | | || |||||||||
Sbjct 4333123 AGAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGC 4333174
>seq1382
Length=172696
Score = 102 bits (112), Expect = 2e-17
Identities = 233/341 (68%), Gaps = 21/341 (6%)
Strand=Plus/Plus
Query 42806 AACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCC--GGCGTATTTGGTGG 42863
|||| ||||| ||||||||||| || | ||| | ||| | || || ||||| || ||
Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554
Query 42864 GTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGAC 42923
|| | ||| |||||||||||| | || |||||| | | | | ||||| ||
Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCAC 123614
Query 42924 TGAAAACGAAAGCCAAAATTA--TGGCTACAAGTTCGGTCAAG----AGGAGGAGACTTA 42977
|||||||||| | |||| || |||| |||||||||| |||| ||||||||
Sbjct 123615 TGAAAACGAA--TCTGCATTAGCAGGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTA 123672
Query 42978 TAA-----CATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCG 43032
|| ||||| || || |||||||| || | || | ||| |||||||||| | |
Sbjct 123673 CAATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGC-TAG 123731
Query 43033 TTT-AATAATAGTCGCT-CT--TTGCACTTCTTTCTT-GCCGCTTGGCCCGTTGTGGGGA 43087
||| || || ||||| || ||| | ||||| || |||||||| ||| | || |
Sbjct 123732 TTTCAACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTA 123791
Query 43088 TTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAAC 43128
| ||| |||| || | || | || || ||||| || |||
Sbjct 123792 TCTGGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAAC 123832
>seq1042
Length=564079
Score = 98.7 bits (108), Expect = 3e-16
Identities = 96/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 42728 TTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCA 42787
|||| ||||| | |||||||||| ||||||| || || || ||||| ||| ||||||
Sbjct 550862 TTGGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCA 550803
Query 42788 TGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTG 42847
|| | || ||||||||||| || ||||| |||||||| || || | ||| | ||| |||
Sbjct 550802 TGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTG 550743
Query 42848 CCGG 42851
| ||
Sbjct 550742 CTGG 550739
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 143520427382932
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