Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq1063 116 1e-21 seq10 107 6e-19 seq1382 102 2e-17 seq1042 98.7 3e-16 >seq1063 Length=431445 Score = 116 bits (128), Expect = 1e-21 Identities = 234/341 (69%), Gaps = 21/341 (6%) Strand=Plus/Minus Query 42746 CAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTG 42805 ||||||| |||||| |||| || || ||||| ||| |||||||| | || || | ||| | Sbjct 54227 CAGATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAG 54168 Query 42806 AACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCC--GGCGTATTTGGTGG 42863 |||| ||||| |||||||||| || || ||| | ||||| || || ||||| || Sbjct 54167 AACACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGGC-- 54110 Query 42864 GTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGAC 42923 | | || || ||||||||| | ||| ||||| | | | | |||| || Sbjct 54109 --CCTAGTACT-----ATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCAC 54057 Query 42924 TGAAAACGAAAGC-CAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACT------T 42976 |||||||||| | | | | | || |||||| ||||||| |||||| | Sbjct 54056 TGAAAACGAATCCGCGTTAGCA-AGTGACTGATTCGGTAAAGAGGAAGAGACTTTACAAT 53998 Query 42977 ATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT- 43035 | | ||||| || || |||||||| || | || | |||||||||||||| | |||| Sbjct 53997 AGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGC-TAGTTTC 53939 Query 43036 AATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCC 43076 || || ||| ||||| || ||||| | || || ||||| Sbjct 53938 AACAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCC 53898 >seq10 Length=33665772 Score = 107 bits (118), Expect = 6e-19 Identities = 201/292 (69%), Gaps = 19/292 (7%) Strand=Plus/Plus Query 42746 CAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTG 42805 ||||||| |||||| | || || || ||||| |||||||||||| | || |||||||| | Sbjct 4332893 CAGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAG 4332952 Query 42806 AACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTG--CCGGCGTATTTGGTGG 42863 |||| ||||| |||||||||| || || ||| | ||||| | | || |||| | | Sbjct 4332953 AACACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTAT----TCG 4333008 Query 42864 GTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGAC 42923 | | | || ||||||||||| | |||| ||||| | | | | |||| || Sbjct 4333009 GCCCTAGT-----ACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCAC 4333063 Query 42924 TGAAAACGAAAGC-CAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACT------T 42976 |||||||||| | | | | | || |||||| ||||||| |||||| | Sbjct 4333064 TGAAAACGAATCCGCGTTAGCA-AGTGACTGATTCGGTAAAGAGGAAGAGACTTTACAAT 4333122 Query 42977 ATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGC 43028 | | |||||| | || |||||||| || | || | | || ||||||||| Sbjct 4333123 AGAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGC 4333174 >seq1382 Length=172696 Score = 102 bits (112), Expect = 2e-17 Identities = 233/341 (68%), Gaps = 21/341 (6%) Strand=Plus/Plus Query 42806 AACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCC--GGCGTATTTGGTGG 42863 |||| ||||| ||||||||||| || | ||| | ||| | || || ||||| || || Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554 Query 42864 GTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGAC 42923 || | ||| |||||||||||| | || |||||| | | | | ||||| || Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCAC 123614 Query 42924 TGAAAACGAAAGCCAAAATTA--TGGCTACAAGTTCGGTCAAG----AGGAGGAGACTTA 42977 |||||||||| | |||| || |||| |||||||||| |||| |||||||| Sbjct 123615 TGAAAACGAA--TCTGCATTAGCAGGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTA 123672 Query 42978 TAA-----CATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCG 43032 || ||||| || || |||||||| || | || | ||| |||||||||| | | Sbjct 123673 CAATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGC-TAG 123731 Query 43033 TTT-AATAATAGTCGCT-CT--TTGCACTTCTTTCTT-GCCGCTTGGCCCGTTGTGGGGA 43087 ||| || || ||||| || ||| | ||||| || |||||||| ||| | || | Sbjct 123732 TTTCAACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTA 123791 Query 43088 TTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAAC 43128 | ||| |||| || | || | || || ||||| || ||| Sbjct 123792 TCTGGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAAC 123832 >seq1042 Length=564079 Score = 98.7 bits (108), Expect = 3e-16 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 42728 TTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCA 42787 |||| ||||| | |||||||||| ||||||| || || || ||||| ||| |||||| Sbjct 550862 TTGGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCA 550803 Query 42788 TGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTG 42847 || | || ||||||||||| || ||||| |||||||| || || | ||| | ||| ||| Sbjct 550802 TGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTG 550743 Query 42848 CCGG 42851 | || Sbjct 550742 CTGG 550739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143520427382932