Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_020874.1
Length=46198
Score E
Sequences producing significant alignments: (Bits) Value
seq1042 91.5 4e-14
seq10 87.8 5e-13
>seq1042
Length=564079
Score = 91.5 bits (100), Expect = 4e-14
Identities = 94/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 26296 CCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATAC 26355
|||||||| ||| ||| | ||||||||||| || || || || || || ||||||||
Sbjct 550738 CCCAGCAAAACCTAACATGTTAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATAC 550797
Query 26356 GAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTG 26415
| ||| |||| |||||||||||||| || ||||||| ||||| || ||| |||||
Sbjct 550798 AATCATGAAGTGGAAAGTACCAGAGATTCCGTGAGGCATACCATCTGAAACACTTCCTTG 550857
Query 26416 TCC 26418
||
Sbjct 550858 ACC 550860
>seq10
Length=33665772
Score = 87.8 bits (96), Expect = 5e-13
Identities = 89/115 (77%), Gaps = 2/115 (2%)
Strand=Plus/Minus
Query 26288 CCGAAAACCCCAG--CAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTG 26345
||||| || |||| | ||||| ||| || ||| | ||||| || || || |||||||
Sbjct 4333009 CCGAATACACCAGAGCTACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTG 4332950
Query 26346 CTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATC 26400
| |||||||| | ||| ||||| ||||||||||| || || | |||||| |||||
Sbjct 4332949 CCTGGAATACAATCATGAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATC 4332895
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 147699267133280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |