Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq1042 91.5 4e-14 seq10 87.8 5e-13 >seq1042 Length=564079 Score = 91.5 bits (100), Expect = 4e-14 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 26296 CCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATAC 26355 |||||||| ||| ||| | ||||||||||| || || || || || || |||||||| Sbjct 550738 CCCAGCAAAACCTAACATGTTAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATAC 550797 Query 26356 GAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTG 26415 | ||| |||| |||||||||||||| || ||||||| ||||| || ||| ||||| Sbjct 550798 AATCATGAAGTGGAAAGTACCAGAGATTCCGTGAGGCATACCATCTGAAACACTTCCTTG 550857 Query 26416 TCC 26418 || Sbjct 550858 ACC 550860 >seq10 Length=33665772 Score = 87.8 bits (96), Expect = 5e-13 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 26288 CCGAAAACCCCAG--CAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTG 26345 ||||| || |||| | ||||| ||| || ||| | ||||| || || || ||||||| Sbjct 4333009 CCGAATACACCAGAGCTACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTG 4332950 Query 26346 CTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATC 26400 | |||||||| | ||| ||||| ||||||||||| || || | |||||| ||||| Sbjct 4332949 CCTGGAATACAATCATGAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATC 4332895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147699267133280