Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_020875.1
Length=182801
Score E
Sequences producing significant alignments: (Bits) Value
seq1382 131 2e-25
seq10 123 3e-23
seq9 122 1e-22
seq1063 116 4e-21
seq4 95.1 1e-14
seq1024 87.8 2e-12
seq1042 82.4 9e-11
>seq1382
Length=172696
Score = 131 bits (144), Expect = 2e-25
Identities = 239/344 (69%), Gaps = 17/344 (5%)
Strand=Plus/Plus
Query 155486 AACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCA--GGTGTGTTCGGTGG 155543
||||||| ||||||||||| || || ||||| | || |||| ||||| ||||| ||
Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554
Query 155544 ATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTAC 155603
|| || ||| ||||||||| ||||| ||||| || ||| | ||| | ||||| ||
Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCAC 123614
Query 155604 TGAGCAAGAGTCT-CAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAA----CTTAT 155658
||| | || ||| || | | ||||||| ||||| |||||||||| || ||||
Sbjct 123615 TGAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTAC 123673
Query 155659 AACA-----TTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCT 155713
|| | |||| ||||||||||| || || | || | ||| |||| ||||| |
Sbjct 123674 AATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTT 123733
Query 155714 TCAACAACTCAAG--AAGTCTTCACTT--CTTCCTTGCTGCATGGCCTGTGGTCTGCATC 155769
|||||||||| | | |||| || | ||| | || || ||||| || | | |||
Sbjct 123734 TCAACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATC 123793
Query 155770 TGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAA 155813
|||| || ||| | ||| | || ||||| |||||||| ||
Sbjct 123794 TGGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837
>seq10
Length=33665772
Score = 123 bits (136), Expect = 3e-23
Identities = 236/343 (69%), Gaps = 25/343 (7%)
Strand=Plus/Plus
Query 155428 GATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAA 155487
|||| |||||| | || || ||||||||||| |||| ||| | || ||||| ||||||
Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954
Query 155488 CACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAG--CAGGTGTGTTCGGTGGAT 155545
||||| ||||||||||| | || |||||| | || |||| | ||||| |||||
Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 4333009
Query 155546 CTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTG 155605
| || | ||||||| ||||| ||||| | |||| | ||| | |||| ||||
Sbjct 4333010 CCCT----AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065
Query 155606 AGCAAGAGTCTCAG--AACTATGGTTACAAGTTCGGACAAGAAGAAGAAACT------TA 155657
| | || || | | | | || || ||||| |||| ||||| ||| ||
Sbjct 4333066 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 4333123
Query 155658 TAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAA 155717
| |||||| | ||||||||| || || | || | | || ||| ||||| |||||
Sbjct 4333124 GAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAA 4333183
Query 155718 CAACTCAAGAAGTCTT--CACTTCTTCCTTGCTGCATGGCCTG 155758
|||||| || |||| || |||||| | ||||| |||||||
Sbjct 4333184 CAACTC--GACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224
>seq9
Length=34148863
Score = 122 bits (134), Expect = 1e-22
Identities = 172/239 (72%), Gaps = 2/239 (1%)
Strand=Plus/Plus
Query 155301 TGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATA 155360
|| || | ||| |||||| || | ||| || |||||||||||||| |||||||||
Sbjct 1506922 TGATCATGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGATTGCTGTTGCATA 1506981
Query 155361 CTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTC 155420
|| || || || | ||||| ||||| ||| | | || ||| | ||||||||
Sbjct 1506982 TTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAG 1507041
Query 155421 TTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGT-TCGTGTTCC 155479
||||||||||| |||||| | || || ||| | | ||| |||| |||| | || || |
Sbjct 1507042 TTTCTCTGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTATTGTATTTC 1507100
Query 155480 AAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTC 155538
||||||||||| ||||||||||| | | |||||| | || ||| | ||||| |||
Sbjct 1507101 TGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGTGTATTC 1507159
>seq1063
Length=431445
Score = 116 bits (128), Expect = 4e-21
Identities = 232/341 (68%), Gaps = 21/341 (6%)
Strand=Plus/Minus
Query 155428 GATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAA 155487
|||| |||||| |||| || ||||||||||| ||| ||| | || || | ||||||
Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166
Query 155488 CACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAG--CAGGTGTGTTCGGTGGAT 155545
||||| ||||||||||| | || |||||| | || |||| | ||||| |||||
Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 54111
Query 155546 CTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTG 155605
| || | ||||||| ||||| ||||| |||| | ||| | |||| ||||
Sbjct 54110 CCCT----AGTACTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTG 54055
Query 155606 AGCAAGAGTCTCAG--AACTATGGTTACAAGTTCGGACAAGAAGAAGAAACT------TA 155657
| | || || | | | | || || ||||| |||| ||||| ||| ||
Sbjct 54054 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 53997
Query 155658 TAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAA 155717
| ||||| ||||||||||| || || | || | |||||||| ||||| |||||
Sbjct 53996 GAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAA 53937
Query 155718 CAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTG 155758
|||||| | | | || |||||| | ||||| |||||||
Sbjct 53936 CAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896
>seq4
Length=30051516
Score = 95.1 bits (104), Expect = 1e-14
Identities = 117/159 (74%), Gaps = 6/159 (4%)
Strand=Plus/Plus
Query 155794 ACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGTGGT 155853
|| ||||| |||||||| || |||||||| |||||||| || ||||| ||| | |||
Sbjct 1282771 ACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTCAGGGT 1282830
Query 155854 AAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGG----AAGT 155909
||||| ||| ||| || || | || || ||| ||||||||||| ||||
Sbjct 1282831 CGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATGGAAGT 1282888
Query 155910 AATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCT 155948
||| || || ||||| ||||| ||||||||| | |||||
Sbjct 1282889 AATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927
>seq1024
Length=717246
Score = 87.8 bits (96), Expect = 2e-12
Identities = 69/83 (83%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 155866 ACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAAC 155925
|| ||||| || || | ||||| ||| |||||||||||||||||||| || |||||
Sbjct 156791 ACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAAT 156850
Query 155926 GCTCACAACTTCCCTCTTGACCT 155948
||||||||||||||||| |||||
Sbjct 156851 GCTCACAACTTCCCTCTAGACCT 156873
>seq1042
Length=564079
Score = 82.4 bits (90), Expect = 9e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 155410 GGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATG 155469
|||||||| | | || |||| ||||||| || |||||||||||||| ||| |||
Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801
Query 155470 TTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATG 155517
| || ||||| || || ||||| |||||||||||||| || |||||
Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATG 550753
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 584782133516040
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