Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq1382 131 2e-25 seq10 123 3e-23 seq9 122 1e-22 seq1063 116 4e-21 seq4 95.1 1e-14 seq1024 87.8 2e-12 seq1042 82.4 9e-11 >seq1382 Length=172696 Score = 131 bits (144), Expect = 2e-25 Identities = 239/344 (69%), Gaps = 17/344 (5%) Strand=Plus/Plus Query 155486 AACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCA--GGTGTGTTCGGTGG 155543 ||||||| ||||||||||| || || ||||| | || |||| ||||| ||||| || Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554 Query 155544 ATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTAC 155603 || || ||| ||||||||| ||||| ||||| || ||| | ||| | ||||| || Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCAC 123614 Query 155604 TGAGCAAGAGTCT-CAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAA----CTTAT 155658 ||| | || ||| || | | ||||||| ||||| |||||||||| || |||| Sbjct 123615 TGAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTAC 123673 Query 155659 AACA-----TTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCT 155713 || | |||| ||||||||||| || || | || | ||| |||| ||||| | Sbjct 123674 AATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTT 123733 Query 155714 TCAACAACTCAAG--AAGTCTTCACTT--CTTCCTTGCTGCATGGCCTGTGGTCTGCATC 155769 |||||||||| | | |||| || | ||| | || || ||||| || | | ||| Sbjct 123734 TCAACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATC 123793 Query 155770 TGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAA 155813 |||| || ||| | ||| | || ||||| |||||||| || Sbjct 123794 TGGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 >seq10 Length=33665772 Score = 123 bits (136), Expect = 3e-23 Identities = 236/343 (69%), Gaps = 25/343 (7%) Strand=Plus/Plus Query 155428 GATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAA 155487 |||| |||||| | || || ||||||||||| |||| ||| | || ||||| |||||| Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954 Query 155488 CACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAG--CAGGTGTGTTCGGTGGAT 155545 ||||| ||||||||||| | || |||||| | || |||| | ||||| ||||| Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 4333009 Query 155546 CTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTG 155605 | || | ||||||| ||||| ||||| | |||| | ||| | |||| |||| Sbjct 4333010 CCCT----AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065 Query 155606 AGCAAGAGTCTCAG--AACTATGGTTACAAGTTCGGACAAGAAGAAGAAACT------TA 155657 | | || || | | | | || || ||||| |||| ||||| ||| || Sbjct 4333066 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 4333123 Query 155658 TAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAA 155717 | |||||| | ||||||||| || || | || | | || ||| ||||| ||||| Sbjct 4333124 GAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAA 4333183 Query 155718 CAACTCAAGAAGTCTT--CACTTCTTCCTTGCTGCATGGCCTG 155758 |||||| || |||| || |||||| | ||||| ||||||| Sbjct 4333184 CAACTC--GACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224 >seq9 Length=34148863 Score = 122 bits (134), Expect = 1e-22 Identities = 172/239 (72%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 155301 TGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATA 155360 || || | ||| |||||| || | ||| || |||||||||||||| ||||||||| Sbjct 1506922 TGATCATGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGATTGCTGTTGCATA 1506981 Query 155361 CTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTC 155420 || || || || | ||||| ||||| ||| | | || ||| | |||||||| Sbjct 1506982 TTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAG 1507041 Query 155421 TTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGT-TCGTGTTCC 155479 ||||||||||| |||||| | || || ||| | | ||| |||| |||| | || || | Sbjct 1507042 TTTCTCTGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTATTGTATTTC 1507100 Query 155480 AAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTC 155538 ||||||||||| ||||||||||| | | |||||| | || ||| | ||||| ||| Sbjct 1507101 TGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGTGTATTC 1507159 >seq1063 Length=431445 Score = 116 bits (128), Expect = 4e-21 Identities = 232/341 (68%), Gaps = 21/341 (6%) Strand=Plus/Minus Query 155428 GATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAA 155487 |||| |||||| |||| || ||||||||||| ||| ||| | || || | |||||| Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166 Query 155488 CACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAG--CAGGTGTGTTCGGTGGAT 155545 ||||| ||||||||||| | || |||||| | || |||| | ||||| ||||| Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 54111 Query 155546 CTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTG 155605 | || | ||||||| ||||| ||||| |||| | ||| | |||| |||| Sbjct 54110 CCCT----AGTACTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTG 54055 Query 155606 AGCAAGAGTCTCAG--AACTATGGTTACAAGTTCGGACAAGAAGAAGAAACT------TA 155657 | | || || | | | | || || ||||| |||| ||||| ||| || Sbjct 54054 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 53997 Query 155658 TAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAA 155717 | ||||| ||||||||||| || || | || | |||||||| ||||| ||||| Sbjct 53996 GAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAA 53937 Query 155718 CAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTG 155758 |||||| | | | || |||||| | ||||| ||||||| Sbjct 53936 CAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896 >seq4 Length=30051516 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/159 (74%), Gaps = 6/159 (4%) Strand=Plus/Plus Query 155794 ACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGTGGT 155853 || ||||| |||||||| || |||||||| |||||||| || ||||| ||| | ||| Sbjct 1282771 ACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTCAGGGT 1282830 Query 155854 AAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGG----AAGT 155909 ||||| ||| ||| || || | || || ||| ||||||||||| |||| Sbjct 1282831 CGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATGGAAGT 1282888 Query 155910 AATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCT 155948 ||| || || ||||| ||||| ||||||||| | ||||| Sbjct 1282889 AATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927 >seq1024 Length=717246 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 155866 ACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAAC 155925 || ||||| || || | ||||| ||| |||||||||||||||||||| || ||||| Sbjct 156791 ACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAAT 156850 Query 155926 GCTCACAACTTCCCTCTTGACCT 155948 ||||||||||||||||| ||||| Sbjct 156851 GCTCACAACTTCCCTCTAGACCT 156873 >seq1042 Length=564079 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 155410 GGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATG 155469 |||||||| | | || |||| ||||||| || |||||||||||||| ||| ||| Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801 Query 155470 TTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATG 155517 | || ||||| || || ||||| |||||||||||||| || ||||| Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATG 550753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584782133516040