Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq9 114 4e-21 seq10 102 2e-17 seq1042 86.0 2e-12 seq1063 84.2 6e-12 seq4 80.6 8e-11 >seq9 Length=34148863 Score = 114 bits (126), Expect = 4e-21 Identities = 133/177 (75%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 40980 TGCATGAGAATGTTGTGTTCTGCTTGGAAGACAA-ACATGAAGTTGAATGTTCCACTGAT 41038 ||||| || |||||||||||||| | || |||| ||||||||||||| | | | || Sbjct 1507125 TGCATAAGGATGTTGTGTTCTGCCAGAAATACAATACATGAAGTTGAAA-TGCTAGATAT 1507067 Query 41039 TCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACAGC 41098 ||||||||||||||||||||||||| || ||||| | || || | ||||| ||||| Sbjct 1507066 TCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGGTAGATCAAGAAAACAGC 1507007 Query 41099 TAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAG 41155 ||| |||| | ||||||| ||||| ||| ||||| || | |||||| || Sbjct 1507006 AGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAG 1506950 >seq10 Length=33665772 Score = 102 bits (112), Expect = 2e-17 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 40956 GCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAAC 41015 || || || | ||| || ||| | ||||| || |||||||||||||| ||||| |||| | Sbjct 4332995 GCTACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTGCCTGGAATACAATC 4332936 Query 41016 ATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATC 41056 ||||||||||| || ||| |||||||||||||||||||| Sbjct 4332935 ATGAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATC 4332895 >seq1042 Length=564079 Score = 86.0 bits (94), Expect = 2e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 40953 CCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACA 41012 || |||| || | ||| | ||||||||||| || |||||||| || || ||||| ||| Sbjct 550739 CCAGCAAAACCTAACATGTTAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 550798 Query 41013 AACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGA 41059 | |||||||| ||| || ||| |||||| |||||||||||| || Sbjct 550799 ATCATGAAGTGGAAAGTACCAGAGATTCCGTGAGGCATACCATCTGA 550845 >seq1063 Length=431445 Score = 84.2 bits (92), Expect = 6e-12 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 40956 GCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAAC 41015 || || || | ||| || ||| | ||||| || |||||||||||||| | || |||| | Sbjct 54125 GCTACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTGCCAGTAATACAATC 54184 Query 41016 ATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATC 41056 ||||||| ||| || ||| ||||| |||||||||||||| Sbjct 54185 ATGAAGTAGAAAGTACCAGATATTCCAAAAGGCATACCATC 54225 >seq4 Length=30051516 Score = 80.6 bits (88), Expect = 8e-11 Identities = 115/161 (71%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 40534 CTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTT----CCATACCTAGA 40589 ||| ||||| ||| ||||| ||||| ||||| || || ||||||| ||||||| ||| Sbjct 1282929 CTAGGTCTAAAGGGAAGTTATGAGCATTACGTTCATGTATTACTTCCATCCATACCAAGA 1282870 Query 40590 CTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTACT 40649 | || | | |||| ||| ||| |||||| ||| | | ||| ||||| Sbjct 1282869 TGAGCACGATTGATGATATCAACCC--GTATTAATGACACGACCCTGACTGTCAACTACG 1282812 Query 40650 GACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGT 40690 || ||||| || || |||||||| ||||| |||||||| || Sbjct 1282811 GATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGT 1282771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143690012763306