Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq1382 154 2e-32 seq10 152 6e-32 seq1063 149 7e-31 seq9 136 4e-27 seq1042 87.8 2e-12 seq4 84.2 2e-11 >seq1382 Length=172696 Score = 154 bits (170), Expect = 2e-32 Identities = 243/342 (71%), Gaps = 17/342 (5%) Strand=Plus/Minus Query 67500 TTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAGATGCAGACCACAGGG 67559 ||||||||||| ||||| || | ||| | || |||| |||||| | | || || Sbjct 123837 TTGAGGTTGAAAGCCATGGTGCTAATACCTAAAGCTGTGACCCAGATACCAATAACTGGC 123778 Query 67560 AATGCAGCAAGGAAG--AAGTGAAGACTT--CTTGAGTTGTTGAAAGATGCATACTGGAA 67615 | || || | ||| | || |||| | | |||||||||||| ||||| |||| Sbjct 123777 CAAGCTGCCAAGAATCCATGTCAAGAAGTAGCGAGAGTTGTTGAAACTAGCATATTGGAG 123718 Query 67616 GATCAAGCGACCGAAGTATCCATGAGCAGCAACAATG-----TTGTAAGTCTCTTC---- 67666 |||||| || | || || ||||||||||| ||||| |||||||||||||| Sbjct 123717 GATCAATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAGTCTCTTCCTTC 123658 Query 67667 TTCTTGTCCGAACTTGTAACCGTAGTTCTGT-GACTCTTGCTCAGTAGTTTCTCTGATAA 67725 |||||| ||||| ||||||| | | || || || | ||||| ||||| ||||| | Sbjct 123657 TTCTTGACCGAATCTGTAACC-TGCTAATGCAGATTCGTTTTCAGTGGTTTCCCTGATCA 123599 Query 67726 GAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACC-- 67783 | ||| || || | ||||| ||||||||||| || || || || ||||||||||| Sbjct 123598 AACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAG 123539 Query 67784 TGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTG 67825 |||| || | ||| | ||||| ||||||||||||||||| Sbjct 123538 AGCTAGACCTAACATGTTCAATGGATGCATAAGGATGTTGTG 123497 >seq10 Length=33665772 Score = 152 bits (168), Expect = 6e-32 Identities = 239/337 (71%), Gaps = 25/337 (7%) Strand=Plus/Minus Query 67555 CAGGGAATGCAGCAAGGAAGAAGTG--AAGACTTCTTGAGTTGTTGAAAGATGCATACTG 67612 |||| | ||||| | |||||| || |||| || |||||||||||| ||||| || Sbjct 4333224 CAGGCCACGCAGCCAAGAAGAAATGTCAAGAAGTC--GAGTTGTTGAAACTAGCATATTG 4333167 Query 67613 GAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATG-----TTGTAA-GTCTCTTC 67666 | || |||| || | || || ||||||||| | |||||| |||||| |||||||| Sbjct 4333166 GCAGTTCAATCGGCTTAAATAACCATGAGCAACTACAATGCTCTATTGTAAAGTCTCTTC 4333107 Query 67667 TTCTTGTCCGAACTTGTAACCGTAGTT--CTGTGACTCTTGCTCAGTAGTTTCTCTGATA 67724 |||| ||||| || || | | | | || || | ||||| |||| ||||| Sbjct 4333106 CTCTTTACCGAATCAGTCAC--TTGCTAACGCGGATTCGTTTTCAGTGATTTCCCTGATG 4333049 Query 67725 AGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCT 67784 | | |||| | || | ||||| ||||||| |||| | ||||||||||| Sbjct 4333048 AAACAAGAGTTGACCAAGGAACCATGCATAGTACTAGGG---------CCGAATACACCA 4332998 Query 67785 G--CTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGA 67842 | |||| || | ||| || ||| | ||||||||||||||||| ||||| ||||| || | Sbjct 4332997 GAGCTACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTGCCTGGAATACAA 4332938 Query 67843 ACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCAT 67879 |||| |||| ||||||||||| || || | |||||| Sbjct 4332937 TCATGAAGTTGAAAGTACCAGATATTCCTAAAGGCAT 4332901 >seq1063 Length=431445 Score = 149 bits (164), Expect = 7e-31 Identities = 238/336 (71%), Gaps = 23/336 (7%) Strand=Plus/Plus Query 67555 CAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGATGCATACTGGA 67614 |||| | ||||| | |||||| || | | | |||||||||||| ||||| |||| Sbjct 53896 CAGGCCACGCAGCCAAGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGA 53955 Query 67615 AGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATG-----TTGTAA-GTCTCTTCTT 67668 ||||||| || | || || ||||||||||| ||||| |||||| |||||||| | Sbjct 53956 AGATCAATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAAGTCTCTTCCT 54015 Query 67669 CTTGTCCGAACTTGTAACCGTAGTT--CTGTGACTCTTGCTCAGTAGTTTCTCTGATAAG 67726 ||| ||||| || || | | | | || || | ||||| |||| ||||| | Sbjct 54016 CTTTACCGAATCAGTCAC--TTGCTAACGCGGATTCGTTTTCAGTGATTTCCCTGATGAA 54073 Query 67727 AGAAGAA-GTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTG 67785 | |||| | | |||| ||||| ||||||| |||| | ||||||||||| | Sbjct 54074 ACAAGAGTGGACCAAG-GAACCATGCATAGTACTAGGG---------CCGAATACACCAG 54123 Query 67786 --CTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAA 67843 |||| || | ||| || ||| | ||||||||||||||||| ||||| | || || | Sbjct 54124 AGCTACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTGCCAGTAATACAAT 54183 Query 67844 CATGTAGTTAAAAGTACCAGAAATACCAAGAGGCAT 67879 |||| ||| ||||||||||| || |||| |||||| Sbjct 54184 CATGAAGTAGAAAGTACCAGATATTCCAAAAGGCAT 54219 >seq9 Length=34148863 Score = 136 bits (150), Expect = 4e-27 Identities = 175/239 (73%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 67775 GAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTG 67834 ||||||||| | ||| || | ||| || | | ||||||||||||||||| ||||| | Sbjct 1507159 GAATACACCAGTTACACCTAACATGTGAACCAGATGCATAAGGATGTTGTGTTCTGCCAG 1507100 Query 67835 GAACACGA-ACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAG 67893 || || | ||||| |||| ||| | | ||| || || | |||||| | ||||||||| Sbjct 1507099 AAATACAATACATGAAGTTGAAA-TGCTAGATATTCCTAAAGGCATACCATCAGAGAAAC 1507041 Query 67894 AACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGT 67953 |||||||| | ||| |||| |||||| ||||| || || | || ||||| || | Sbjct 1507040 TTCCTTGACCAATAGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAAT 1506981 Query 67954 ATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCA 68012 |||| ||| ||||||||||||||||| ||| | || |||||| ||| | || || Sbjct 1506980 ATGCAACAGCAATCCAAGGACGCATACCCAGATAGAAACTAAGTTCATACTCATGATCA 1506922 >seq1042 Length=564079 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 67803 AATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCA 67862 |||||||||||||||||||||||||| || ||||| || | |||| ||| ||||||||| Sbjct 550760 AATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTGGAAAGTACCA 550819 Query 67863 GAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACC 67903 || || || ||||||| | || || | | |||||||| Sbjct 550820 GAGATTCCGTGAGGCATACCATCTGAAACACTTCCTTGACC 550860 >seq4 Length=30051516 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/161 (73%), Gaps = 10/161 (6%) Strand=Plus/Minus Query 67365 AGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTC----CAAGTCC 67420 ||||| | ||||||||| ||||| ||||| || || || |||||||| | |||| Sbjct 1282927 AGGTCTAAAGGGAAGTTATGAGCATTACGTTCATGTATTACTTCCATCCATACCAAGATG 1282868 Query 67421 TGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGC--GTCAACGACG 67478 || | || | ||| || ||| ||| ||| || ||| ||| |||||| ||| Sbjct 1282867 AGCACGATTGATGATATCAACCC--GTATTAATGACACGACC--CTGACTGTCAACTACG 1282812 Query 67479 GATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGT 67519 ||||||||||| |||||||| || |||||||| ||||| || Sbjct 1282811 GATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGT 1282771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566895756628440