Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_021071.1
Length=177211
Score E
Sequences producing significant alignments: (Bits) Value
seq1382 154 2e-32
seq10 152 6e-32
seq1063 149 7e-31
seq9 136 4e-27
seq1042 87.8 2e-12
seq4 84.2 2e-11
>seq1382
Length=172696
Score = 154 bits (170), Expect = 2e-32
Identities = 243/342 (71%), Gaps = 17/342 (5%)
Strand=Plus/Minus
Query 67500 TTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAGATGCAGACCACAGGG 67559
||||||||||| ||||| || | ||| | || |||| |||||| | | || ||
Sbjct 123837 TTGAGGTTGAAAGCCATGGTGCTAATACCTAAAGCTGTGACCCAGATACCAATAACTGGC 123778
Query 67560 AATGCAGCAAGGAAG--AAGTGAAGACTT--CTTGAGTTGTTGAAAGATGCATACTGGAA 67615
| || || | ||| | || |||| | | |||||||||||| ||||| ||||
Sbjct 123777 CAAGCTGCCAAGAATCCATGTCAAGAAGTAGCGAGAGTTGTTGAAACTAGCATATTGGAG 123718
Query 67616 GATCAAGCGACCGAAGTATCCATGAGCAGCAACAATG-----TTGTAAGTCTCTTC---- 67666
|||||| || | || || ||||||||||| ||||| ||||||||||||||
Sbjct 123717 GATCAATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAGTCTCTTCCTTC 123658
Query 67667 TTCTTGTCCGAACTTGTAACCGTAGTTCTGT-GACTCTTGCTCAGTAGTTTCTCTGATAA 67725
|||||| ||||| ||||||| | | || || || | ||||| ||||| ||||| |
Sbjct 123657 TTCTTGACCGAATCTGTAACC-TGCTAATGCAGATTCGTTTTCAGTGGTTTCCCTGATCA 123599
Query 67726 GAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACC-- 67783
| ||| || || | ||||| ||||||||||| || || || || |||||||||||
Sbjct 123598 AACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAG 123539
Query 67784 TGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTG 67825
|||| || | ||| | ||||| |||||||||||||||||
Sbjct 123538 AGCTAGACCTAACATGTTCAATGGATGCATAAGGATGTTGTG 123497
>seq10
Length=33665772
Score = 152 bits (168), Expect = 6e-32
Identities = 239/337 (71%), Gaps = 25/337 (7%)
Strand=Plus/Minus
Query 67555 CAGGGAATGCAGCAAGGAAGAAGTG--AAGACTTCTTGAGTTGTTGAAAGATGCATACTG 67612
|||| | ||||| | |||||| || |||| || |||||||||||| ||||| ||
Sbjct 4333224 CAGGCCACGCAGCCAAGAAGAAATGTCAAGAAGTC--GAGTTGTTGAAACTAGCATATTG 4333167
Query 67613 GAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATG-----TTGTAA-GTCTCTTC 67666
| || |||| || | || || ||||||||| | |||||| |||||| ||||||||
Sbjct 4333166 GCAGTTCAATCGGCTTAAATAACCATGAGCAACTACAATGCTCTATTGTAAAGTCTCTTC 4333107
Query 67667 TTCTTGTCCGAACTTGTAACCGTAGTT--CTGTGACTCTTGCTCAGTAGTTTCTCTGATA 67724
|||| ||||| || || | | | | || || | ||||| |||| |||||
Sbjct 4333106 CTCTTTACCGAATCAGTCAC--TTGCTAACGCGGATTCGTTTTCAGTGATTTCCCTGATG 4333049
Query 67725 AGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCT 67784
| | |||| | || | ||||| ||||||| |||| | |||||||||||
Sbjct 4333048 AAACAAGAGTTGACCAAGGAACCATGCATAGTACTAGGG---------CCGAATACACCA 4332998
Query 67785 G--CTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGA 67842
| |||| || | ||| || ||| | ||||||||||||||||| ||||| ||||| || |
Sbjct 4332997 GAGCTACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTGCCTGGAATACAA 4332938
Query 67843 ACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCAT 67879
|||| |||| ||||||||||| || || | ||||||
Sbjct 4332937 TCATGAAGTTGAAAGTACCAGATATTCCTAAAGGCAT 4332901
>seq1063
Length=431445
Score = 149 bits (164), Expect = 7e-31
Identities = 238/336 (71%), Gaps = 23/336 (7%)
Strand=Plus/Plus
Query 67555 CAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGATGCATACTGGA 67614
|||| | ||||| | |||||| || | | | |||||||||||| ||||| ||||
Sbjct 53896 CAGGCCACGCAGCCAAGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGA 53955
Query 67615 AGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATG-----TTGTAA-GTCTCTTCTT 67668
||||||| || | || || ||||||||||| ||||| |||||| |||||||| |
Sbjct 53956 AGATCAATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAAGTCTCTTCCT 54015
Query 67669 CTTGTCCGAACTTGTAACCGTAGTT--CTGTGACTCTTGCTCAGTAGTTTCTCTGATAAG 67726
||| ||||| || || | | | | || || | ||||| |||| ||||| |
Sbjct 54016 CTTTACCGAATCAGTCAC--TTGCTAACGCGGATTCGTTTTCAGTGATTTCCCTGATGAA 54073
Query 67727 AGAAGAA-GTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTG 67785
| |||| | | |||| ||||| ||||||| |||| | ||||||||||| |
Sbjct 54074 ACAAGAGTGGACCAAG-GAACCATGCATAGTACTAGGG---------CCGAATACACCAG 54123
Query 67786 --CTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAA 67843
|||| || | ||| || ||| | ||||||||||||||||| ||||| | || || |
Sbjct 54124 AGCTACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTGCCAGTAATACAAT 54183
Query 67844 CATGTAGTTAAAAGTACCAGAAATACCAAGAGGCAT 67879
|||| ||| ||||||||||| || |||| ||||||
Sbjct 54184 CATGAAGTAGAAAGTACCAGATATTCCAAAAGGCAT 54219
>seq9
Length=34148863
Score = 136 bits (150), Expect = 4e-27
Identities = 175/239 (73%), Gaps = 2/239 (1%)
Strand=Plus/Minus
Query 67775 GAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTG 67834
||||||||| | ||| || | ||| || | | ||||||||||||||||| ||||| |
Sbjct 1507159 GAATACACCAGTTACACCTAACATGTGAACCAGATGCATAAGGATGTTGTGTTCTGCCAG 1507100
Query 67835 GAACACGA-ACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAG 67893
|| || | ||||| |||| ||| | | ||| || || | |||||| | |||||||||
Sbjct 1507099 AAATACAATACATGAAGTTGAAA-TGCTAGATATTCCTAAAGGCATACCATCAGAGAAAC 1507041
Query 67894 AACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGT 67953
|||||||| | ||| |||| |||||| ||||| || || | || ||||| || |
Sbjct 1507040 TTCCTTGACCAATAGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAAT 1506981
Query 67954 ATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCA 68012
|||| ||| ||||||||||||||||| ||| | || |||||| ||| | || ||
Sbjct 1506980 ATGCAACAGCAATCCAAGGACGCATACCCAGATAGAAACTAAGTTCATACTCATGATCA 1506922
>seq1042
Length=564079
Score = 87.8 bits (96), Expect = 2e-12
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 67803 AATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCA 67862
|||||||||||||||||||||||||| || ||||| || | |||| ||| |||||||||
Sbjct 550760 AATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTGGAAAGTACCA 550819
Query 67863 GAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACC 67903
|| || || ||||||| | || || | | ||||||||
Sbjct 550820 GAGATTCCGTGAGGCATACCATCTGAAACACTTCCTTGACC 550860
>seq4
Length=30051516
Score = 84.2 bits (92), Expect = 2e-11
Identities = 117/161 (73%), Gaps = 10/161 (6%)
Strand=Plus/Minus
Query 67365 AGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTC----CAAGTCC 67420
||||| | ||||||||| ||||| ||||| || || || |||||||| | ||||
Sbjct 1282927 AGGTCTAAAGGGAAGTTATGAGCATTACGTTCATGTATTACTTCCATCCATACCAAGATG 1282868
Query 67421 TGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGC--GTCAACGACG 67478
|| | || | ||| || ||| ||| ||| || ||| ||| |||||| |||
Sbjct 1282867 AGCACGATTGATGATATCAACCC--GTATTAATGACACGACC--CTGACTGTCAACTACG 1282812
Query 67479 GATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGT 67519
||||||||||| |||||||| || |||||||| ||||| ||
Sbjct 1282811 GATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGT 1282771
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 566895756628440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |