Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_021072.1
Length=178807
Score E
Sequences producing significant alignments: (Bits) Value
seq1382 172 6e-38
seq1063 150 2e-31
seq10 141 1e-28
seq9 131 2e-25
seq1042 91.5 2e-13
seq4 89.7 6e-13
seq480 87.8 2e-12
seq1290 86.0 7e-12
>seq1382
Length=172696
Score = 172 bits (190), Expect = 6e-38
Identities = 247/342 (72%), Gaps = 17/342 (5%)
Strand=Plus/Minus
Query 67981 TTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGTGAACCAGATACCAACGACAGGC 68040
|| |||||||| ||||||||||||| ||| | || |||| ||||||||||| || |||
Sbjct 123837 TTGAGGTTGAAAGCCATGGTGCTAATACCTAAAGCTGTGACCCAGATACCAATAACTGGC 123778
Query 68041 CATGCAGCAAGGAA--GAAGTGCAG--CGAACGGGAGTTGTTGAACGATGCATACTGGAA 68096
|| || || | ||| | || || | || ||||||||||| ||||| ||||
Sbjct 123777 CAAGCTGCCAAGAATCCATGTCAAGAAGTAGCGAGAGTTGTTGAAACTAGCATATTGGAG 123718
Query 68097 GATCAGACGACCGAAGTATCCATGTGCAGCAACAA-----TGTTGTAAGTCT----CTTC 68147
||||| || | || || ||||| ||||| |||| | |||||||||| ||||
Sbjct 123717 GATCAATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAGTCTCTTCCTTC 123658
Query 68148 TTCTTGACCGAACTTGTAACCATAGTTCTG-GGACTCAGTTTCAGTGGTTTCACGAACCA 68206
|||||||||||| ||||||| | | || || || ||||||||||||| | | ||
Sbjct 123657 TTCTTGACCGAATCTGTAACC-TGCTAATGCAGATTCGTTTTCAGTGGTTTCCCTGATCA 123599
Query 68207 GTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCC-- 68264
||| || |||| |||||||||||| |||||||| || || || || ||||| ||
Sbjct 123598 AACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAG 123539
Query 68265 AGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTG 68306
||| | || | ||| | || || ||||| |||||||||||
Sbjct 123538 AGCTAGACCTAACATGTTCAATGGATGCATAAGGATGTTGTG 123497
>seq1063
Length=431445
Score = 150 bits (166), Expect = 2e-31
Identities = 547/839 (65%), Gaps = 104/839 (12%)
Strand=Plus/Plus
Query 68036 CAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGATGCATACTGGA 68095
||||||| ||||| | |||||| || | ||||| ||||||||||| ||||| ||||
Sbjct 53896 CAGGCCACGCAGCCAAGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGA 53955
Query 68096 AGATCAGACGACCGAAGTATCCATGTGCAGCAACAA-----TGTTGT-AAGTCTCTTCTT 68149
|||||| || | || || ||||| ||||| |||| | |||| |||||||||| |
Sbjct 53956 AGATCAATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAAGTCTCTTCCT 54015
Query 68150 CTTGACCGAACTTGTAACCATAGTT--CTGGGACTCAGTTTCAGTGGTTTCACGAACCAG 68207
||| |||||| || || | | | | ||| || |||||||| |||| | | |
Sbjct 54016 CTTTACCGAATCAGTCAC--TTGCTAACGCGGATTCGTTTTCAGTGATTTCCCTGATGAA 54073
Query 68208 TGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCC--A 68265
|||| |||| |||||||||||| | ||| || | || ||||| || |
Sbjct 54074 ACAAGAGTGGACCAAGGAACCATGCATAGTACT----AGGG-----CCGAATACACCAGA 54124
Query 68266 GCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGC 68325
|| || || | ||| || || | ||||| ||||||||||| ||||| | || || | |
Sbjct 54125 GCTACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTGCCAGTAATACAATC 54184
Query 68326 ATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCAT------TG----------------- 68362
||| ||| |||||||||||| || || | |||||| ||
Sbjct 54185 ATGAAGTAGAAAGTACCAGATATTCCAAAAGGCATACCATCTGTATTCCTAAAGGCATAT 54244
Query 68363 CGTCAGAGAACGAACCTTGAC---------CGAAAGGATAGACCAGGAAGACTGCGGATG 68413
|||||||||| | ||||||| | | ||| | || || ||| || ||
Sbjct 54245 CGTCAGAGAAACATCCTTGACTAATAGAATCAATAGGGTCGATCAAGAAAAC------TG 54298
Query 68414 CTGCTGCAACAGGTGCAGAGTATGCAACACAGATCCAAGGACGCATACCAAGACGATAGG 68473
| | ||||| | ||| ||||||||| ||||||||||||||||| | || |
Sbjct 54299 CAGTAGCAAC--GAGCATCATATGCAACAGCAATCCAAGGACGCATACCTA---TATTGA 54353
Query 68474 AAAGTTCCCATTCACGTCCCATGTATGCAAAGATACCAA-TCAGGAAGTGAAAGATTACG 68532
|| | | | ||| | |||||||| | | ||||| ||| ||||| | | |
Sbjct 54354 AACG--GCAACTCAGGACCCATGTAATAAGCTACACCAAGTCA-TAAGTGTCAAACAATT 54410
Query 68533 AG-TTGGAAAGGACCACCATTGTACAACCACTCATCA-AG-GGTTGC-TGCTTCCCAAAT 68588
|| || | ||||| |||||||| ||||||||| || || | || |||||||| ||
Sbjct 54411 AGCTTCTACGGGACCGCCATTGTAGAACCACTCAACACAGATGCAGCTTGCTTCCCGGAT 54470
Query 68589 GGGATAAAAGTGAAGACCAATTGCATTTGAACTAGGAACAACAGC--------ACCAGAA 68640
|| | || | ||| || || | || | |||| || ||| ||||||
Sbjct 54471 AGGGT---CGTCA--ACCTATAGCTGTCAAAGTCGGAATAATAGCACTAACTAACCAGAG 54525
Query 68641 ATGATGTTGTTACCAT--ACAGAAGTGAACCAGCAACAGGTTCACGAATACC----ATCG 68694
| | | || | || | | | |||| || |||||||| ||||||||| |||
Sbjct 54526 AGAAGAATATTTCTATGAAAGGTATAGAACGAGAAACAGGTTAACGAATACCATCAATCA 54585
Query 68695 ATGTCCACAG--GGGGAGCAGCGATGAAGGCGA----CGATGAAACAGATG-GTTGCTG- 68746
|| | |||| || ||||||| |||||||| | | || ||| | || ||||| |
Sbjct 54586 ATATATACAGGAGGAGAGCAGCAATGAAGGCTATCTTCAATACAACGGTTGCGTTGCGGT 54645
Query 68747 CAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACC----AACGTAAAGGCGGTTCTC 68801
||| || ||||||||||||| || |||||||| || || |||||| ||||| ||
Sbjct 54646 CAATAAG-GTAGGGATCATCAAAACACCGAACCACCCAATGAATGTAAAGACGGTTTTC 54703
>seq10
Length=33665772
Score = 141 bits (156), Expect = 1e-28
Identities = 235/335 (70%), Gaps = 21/335 (6%)
Strand=Plus/Minus
Query 68036 CAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGATGCATACTGGA 68095
||||||| ||||| | |||||| || ||| ||||||||||| ||||| |||
Sbjct 4333224 CAGGCCACGCAGCCAAGAAGAAATGTCAAGAAGTCGAGTTGTTGAAACTAGCATATTGGC 4333165
Query 68096 AGATCAGACGACCGAAGTATCCATGTGCAGCAACAATG-----TTGTAA-GTCTCTTCTT 68149
|| ||| || | || || ||||| ||| | |||||| |||||| |||||||| |
Sbjct 4333164 AGTTCAATCGGCTTAAATAACCATGAGCAACTACAATGCTCTATTGTAAAGTCTCTTCCT 4333105
Query 68150 CTTGACCGAACTTGTAACCATAGTT--CTGGGACTCAGTTTCAGTGGTTTCACGAACCAG 68207
||| |||||| || || | | | | ||| || |||||||| |||| | | |
Sbjct 4333104 CTTTACCGAATCAGTCAC--TTGCTAACGCGGATTCGTTTTCAGTGATTTCCCTGATGAA 4333047
Query 68208 TGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCAG- 68266
|||| | |||| |||||||||||| | ||| || | || ||||| ||||
Sbjct 4333046 ACAAGAGTTGACCAAGGAACCATGCATAGTACT----AGGG-----CCGAATACACCAGA 4332996
Query 68267 -CAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGC 68325
| || || | ||| || || | ||||| ||||||||||| ||||| ||||| || | |
Sbjct 4332995 GCTACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTGCCTGGAATACAATC 4332936
Query 68326 ATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCAT 68360
||| |||||||||||||||| || || | ||||||
Sbjct 4332935 ATGAAGTTGAAAGTACCAGATATTCCTAAAGGCAT 4332901
>seq9
Length=34148863
Score = 131 bits (144), Expect = 2e-25
Identities = 157/211 (74%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 68257 AATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGG 68316
||||| |||| || || | ||| || | | ||||| ||||||||||| ||||| |
Sbjct 1507158 AATACACCAGTTACACCTAACATGTGAACCAGATGCATAAGGATGTTGTGTTCTGCCAGA 1507099
Query 68317 AACACCAG-CATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGA 68375
|| || | |||| |||||||| | | ||| || || | |||||| | ||||||||
Sbjct 1507098 AATACAATACATGAAGTTGAAA-TGCTAGATATTCCTAAAGGCATACCATCAGAGAAACT 1507040
Query 68376 ACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTA 68435
|||||||| | ||| |||| || ||| || || | || ||||||||||| || || ||
Sbjct 1507039 TCCTTGACCAATAGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATA 1506980
Query 68436 TGCAACACAGATCCAAGGACGCATACCAAGA 68466
||||||| ||||||||||||||||| |||
Sbjct 1506979 TGCAACAGCAATCCAAGGACGCATACCCAGA 1506949
>seq1042
Length=564079
Score = 91.5 bits (100), Expect = 2e-13
Identities = 79/98 (81%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 68263 CCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACC 68322
||||||| || | ||| | || |||||||| |||||||||||||| || ||||| ||
Sbjct 550739 CCAGCAAAACCTAACATGTTAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 550798
Query 68323 AGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCAT 68360
| |||| ||| |||||||||||| || ||| |||||||
Sbjct 550799 ATCATGAAGTGGAAAGTACCAGAGATTCCGTGAGGCAT 550836
>seq4
Length=30051516
Score = 89.7 bits (98), Expect = 6e-13
Identities = 123/169 (73%), Gaps = 6/169 (4%)
Strand=Plus/Minus
Query 67846 AGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATAC---CCAA-ACC 67901
||||| | ||||||||| || || ||||| ||||| || |||||||| | |||| |
Sbjct 1282927 AGGTCTAAAGGGAAGTTATGAGCATTACGTTCATGTATTACTTCCATCCATACCAAGATG 1282868
Query 67902 AGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGATAGA 67961
||| || |||| | || ||| ||| | || ||| ||| |||| | ||
Sbjct 1282867 AGCACGATTGATGATATCAACCC--GTATTAATGACACGACCCTGACTGTCAACTACGGA 1282810
Query 67962 CTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCA 68010
|||||||| ||||||||||| |||||||| ||||||||||||| ||||
Sbjct 1282809 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTAATACCA 1282761
>seq480
Length=3896
Score = 87.8 bits (96), Expect = 2e-12
Identities = 69/82 (84%), Gaps = 2/82 (2%)
Strand=Plus/Plus
Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560
||||| || ||||||| |||||||| ||||||||||||| || ||||||| ||| ||
Sbjct 3753 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAGTCAGTTAACAGCCGACCGC 3810
Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582
||| || |||||||||||||||
Sbjct 3811 TCTACCACTGAGCTACTGAGGA 3832
>seq1290
Length=351781
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570
||||||| |||||||| ||||||||||||| || ||||||| ||| ||||| || |||
Sbjct 147083 CTCCCCAAGTAGGATTCGAACCTACGACCAGTCAGTTAACAGCCGACCGCTCTACCACTG 147142
Query 35571 AGCTACTGAGGA 35582
||||||||||||
Sbjct 147143 AGCTACTGAGGA 147154
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 572002493213880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |