Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq1382 172 6e-38 seq1063 150 2e-31 seq10 141 1e-28 seq9 131 2e-25 seq1042 91.5 2e-13 seq4 89.7 6e-13 seq480 87.8 2e-12 seq1290 86.0 7e-12 >seq1382 Length=172696 Score = 172 bits (190), Expect = 6e-38 Identities = 247/342 (72%), Gaps = 17/342 (5%) Strand=Plus/Minus Query 67981 TTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGTGAACCAGATACCAACGACAGGC 68040 || |||||||| ||||||||||||| ||| | || |||| ||||||||||| || ||| Sbjct 123837 TTGAGGTTGAAAGCCATGGTGCTAATACCTAAAGCTGTGACCCAGATACCAATAACTGGC 123778 Query 68041 CATGCAGCAAGGAA--GAAGTGCAG--CGAACGGGAGTTGTTGAACGATGCATACTGGAA 68096 || || || | ||| | || || | || ||||||||||| ||||| |||| Sbjct 123777 CAAGCTGCCAAGAATCCATGTCAAGAAGTAGCGAGAGTTGTTGAAACTAGCATATTGGAG 123718 Query 68097 GATCAGACGACCGAAGTATCCATGTGCAGCAACAA-----TGTTGTAAGTCT----CTTC 68147 ||||| || | || || ||||| ||||| |||| | |||||||||| |||| Sbjct 123717 GATCAATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAGTCTCTTCCTTC 123658 Query 68148 TTCTTGACCGAACTTGTAACCATAGTTCTG-GGACTCAGTTTCAGTGGTTTCACGAACCA 68206 |||||||||||| ||||||| | | || || || ||||||||||||| | | || Sbjct 123657 TTCTTGACCGAATCTGTAACC-TGCTAATGCAGATTCGTTTTCAGTGGTTTCCCTGATCA 123599 Query 68207 GTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCC-- 68264 ||| || |||| |||||||||||| |||||||| || || || || ||||| || Sbjct 123598 AACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAG 123539 Query 68265 AGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTG 68306 ||| | || | ||| | || || ||||| ||||||||||| Sbjct 123538 AGCTAGACCTAACATGTTCAATGGATGCATAAGGATGTTGTG 123497 >seq1063 Length=431445 Score = 150 bits (166), Expect = 2e-31 Identities = 547/839 (65%), Gaps = 104/839 (12%) Strand=Plus/Plus Query 68036 CAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGATGCATACTGGA 68095 ||||||| ||||| | |||||| || | ||||| ||||||||||| ||||| |||| Sbjct 53896 CAGGCCACGCAGCCAAGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGA 53955 Query 68096 AGATCAGACGACCGAAGTATCCATGTGCAGCAACAA-----TGTTGT-AAGTCTCTTCTT 68149 |||||| || | || || ||||| ||||| |||| | |||| |||||||||| | Sbjct 53956 AGATCAATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAAGTCTCTTCCT 54015 Query 68150 CTTGACCGAACTTGTAACCATAGTT--CTGGGACTCAGTTTCAGTGGTTTCACGAACCAG 68207 ||| |||||| || || | | | | ||| || |||||||| |||| | | | Sbjct 54016 CTTTACCGAATCAGTCAC--TTGCTAACGCGGATTCGTTTTCAGTGATTTCCCTGATGAA 54073 Query 68208 TGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCC--A 68265 |||| |||| |||||||||||| | ||| || | || ||||| || | Sbjct 54074 ACAAGAGTGGACCAAGGAACCATGCATAGTACT----AGGG-----CCGAATACACCAGA 54124 Query 68266 GCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGC 68325 || || || | ||| || || | ||||| ||||||||||| ||||| | || || | | Sbjct 54125 GCTACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTGCCAGTAATACAATC 54184 Query 68326 ATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCAT------TG----------------- 68362 ||| ||| |||||||||||| || || | |||||| || Sbjct 54185 ATGAAGTAGAAAGTACCAGATATTCCAAAAGGCATACCATCTGTATTCCTAAAGGCATAT 54244 Query 68363 CGTCAGAGAACGAACCTTGAC---------CGAAAGGATAGACCAGGAAGACTGCGGATG 68413 |||||||||| | ||||||| | | ||| | || || ||| || || Sbjct 54245 CGTCAGAGAAACATCCTTGACTAATAGAATCAATAGGGTCGATCAAGAAAAC------TG 54298 Query 68414 CTGCTGCAACAGGTGCAGAGTATGCAACACAGATCCAAGGACGCATACCAAGACGATAGG 68473 | | ||||| | ||| ||||||||| ||||||||||||||||| | || | Sbjct 54299 CAGTAGCAAC--GAGCATCATATGCAACAGCAATCCAAGGACGCATACCTA---TATTGA 54353 Query 68474 AAAGTTCCCATTCACGTCCCATGTATGCAAAGATACCAA-TCAGGAAGTGAAAGATTACG 68532 || | | | ||| | |||||||| | | ||||| ||| ||||| | | | Sbjct 54354 AACG--GCAACTCAGGACCCATGTAATAAGCTACACCAAGTCA-TAAGTGTCAAACAATT 54410 Query 68533 AG-TTGGAAAGGACCACCATTGTACAACCACTCATCA-AG-GGTTGC-TGCTTCCCAAAT 68588 || || | ||||| |||||||| ||||||||| || || | || |||||||| || Sbjct 54411 AGCTTCTACGGGACCGCCATTGTAGAACCACTCAACACAGATGCAGCTTGCTTCCCGGAT 54470 Query 68589 GGGATAAAAGTGAAGACCAATTGCATTTGAACTAGGAACAACAGC--------ACCAGAA 68640 || | || | ||| || || | || | |||| || ||| |||||| Sbjct 54471 AGGGT---CGTCA--ACCTATAGCTGTCAAAGTCGGAATAATAGCACTAACTAACCAGAG 54525 Query 68641 ATGATGTTGTTACCAT--ACAGAAGTGAACCAGCAACAGGTTCACGAATACC----ATCG 68694 | | | || | || | | | |||| || |||||||| ||||||||| ||| Sbjct 54526 AGAAGAATATTTCTATGAAAGGTATAGAACGAGAAACAGGTTAACGAATACCATCAATCA 54585 Query 68695 ATGTCCACAG--GGGGAGCAGCGATGAAGGCGA----CGATGAAACAGATG-GTTGCTG- 68746 || | |||| || ||||||| |||||||| | | || ||| | || ||||| | Sbjct 54586 ATATATACAGGAGGAGAGCAGCAATGAAGGCTATCTTCAATACAACGGTTGCGTTGCGGT 54645 Query 68747 CAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACC----AACGTAAAGGCGGTTCTC 68801 ||| || ||||||||||||| || |||||||| || || |||||| ||||| || Sbjct 54646 CAATAAG-GTAGGGATCATCAAAACACCGAACCACCCAATGAATGTAAAGACGGTTTTC 54703 >seq10 Length=33665772 Score = 141 bits (156), Expect = 1e-28 Identities = 235/335 (70%), Gaps = 21/335 (6%) Strand=Plus/Minus Query 68036 CAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGATGCATACTGGA 68095 ||||||| ||||| | |||||| || ||| ||||||||||| ||||| ||| Sbjct 4333224 CAGGCCACGCAGCCAAGAAGAAATGTCAAGAAGTCGAGTTGTTGAAACTAGCATATTGGC 4333165 Query 68096 AGATCAGACGACCGAAGTATCCATGTGCAGCAACAATG-----TTGTAA-GTCTCTTCTT 68149 || ||| || | || || ||||| ||| | |||||| |||||| |||||||| | Sbjct 4333164 AGTTCAATCGGCTTAAATAACCATGAGCAACTACAATGCTCTATTGTAAAGTCTCTTCCT 4333105 Query 68150 CTTGACCGAACTTGTAACCATAGTT--CTGGGACTCAGTTTCAGTGGTTTCACGAACCAG 68207 ||| |||||| || || | | | | ||| || |||||||| |||| | | | Sbjct 4333104 CTTTACCGAATCAGTCAC--TTGCTAACGCGGATTCGTTTTCAGTGATTTCCCTGATGAA 4333047 Query 68208 TGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCAG- 68266 |||| | |||| |||||||||||| | ||| || | || ||||| |||| Sbjct 4333046 ACAAGAGTTGACCAAGGAACCATGCATAGTACT----AGGG-----CCGAATACACCAGA 4332996 Query 68267 -CAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGC 68325 | || || | ||| || || | ||||| ||||||||||| ||||| ||||| || | | Sbjct 4332995 GCTACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTGCCTGGAATACAATC 4332936 Query 68326 ATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCAT 68360 ||| |||||||||||||||| || || | |||||| Sbjct 4332935 ATGAAGTTGAAAGTACCAGATATTCCTAAAGGCAT 4332901 >seq9 Length=34148863 Score = 131 bits (144), Expect = 2e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 68257 AATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGG 68316 ||||| |||| || || | ||| || | | ||||| ||||||||||| ||||| | Sbjct 1507158 AATACACCAGTTACACCTAACATGTGAACCAGATGCATAAGGATGTTGTGTTCTGCCAGA 1507099 Query 68317 AACACCAG-CATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGA 68375 || || | |||| |||||||| | | ||| || || | |||||| | |||||||| Sbjct 1507098 AATACAATACATGAAGTTGAAA-TGCTAGATATTCCTAAAGGCATACCATCAGAGAAACT 1507040 Query 68376 ACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTA 68435 |||||||| | ||| |||| || ||| || || | || ||||||||||| || || || Sbjct 1507039 TCCTTGACCAATAGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATA 1506980 Query 68436 TGCAACACAGATCCAAGGACGCATACCAAGA 68466 ||||||| ||||||||||||||||| ||| Sbjct 1506979 TGCAACAGCAATCCAAGGACGCATACCCAGA 1506949 >seq1042 Length=564079 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 68263 CCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACC 68322 ||||||| || | ||| | || |||||||| |||||||||||||| || ||||| || Sbjct 550739 CCAGCAAAACCTAACATGTTAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 550798 Query 68323 AGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCAT 68360 | |||| ||| |||||||||||| || ||| ||||||| Sbjct 550799 ATCATGAAGTGGAAAGTACCAGAGATTCCGTGAGGCAT 550836 >seq4 Length=30051516 Score = 89.7 bits (98), Expect = 6e-13 Identities = 123/169 (73%), Gaps = 6/169 (4%) Strand=Plus/Minus Query 67846 AGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATAC---CCAA-ACC 67901 ||||| | ||||||||| || || ||||| ||||| || |||||||| | |||| | Sbjct 1282927 AGGTCTAAAGGGAAGTTATGAGCATTACGTTCATGTATTACTTCCATCCATACCAAGATG 1282868 Query 67902 AGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGATAGA 67961 ||| || |||| | || ||| ||| | || ||| ||| |||| | || Sbjct 1282867 AGCACGATTGATGATATCAACCC--GTATTAATGACACGACCCTGACTGTCAACTACGGA 1282810 Query 67962 CTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCA 68010 |||||||| ||||||||||| |||||||| ||||||||||||| |||| Sbjct 1282809 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTAATACCA 1282761 >seq480 Length=3896 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| ||||||||||||| || ||||||| ||| || Sbjct 3753 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAGTCAGTTAACAGCCGACCGC 3810 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| || ||||||||||||||| Sbjct 3811 TCTACCACTGAGCTACTGAGGA 3832 >seq1290 Length=351781 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 ||||||| |||||||| ||||||||||||| || ||||||| ||| ||||| || ||| Sbjct 147083 CTCCCCAAGTAGGATTCGAACCTACGACCAGTCAGTTAACAGCCGACCGCTCTACCACTG 147142 Query 35571 AGCTACTGAGGA 35582 |||||||||||| Sbjct 147143 AGCTACTGAGGA 147154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572002493213880