Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq4576 87.8 3e-12
seq10 87.8 3e-12
>seq4576
Length=2771
Score = 87.8 bits (96), Expect = 3e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| |||| || | ||||||||||| || || | || |||||| ||
Sbjct 2491 ATGCAGATCTTTGTTAAGACGCTCACTGGAAAAACCATCACCCTCGAGGTCGAAAGCTCC 2550
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | || ||||| ||| ||| || || || ||||| ||||| ||||| || ||
Sbjct 2551 GACACCATCGACAACGTCAAAGCTAAGATCCAGGACAAAGAGGGCATCCCTCCCGACCAG 2610
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||||| | |||| || || ||||||||||| ||| | | || | | || || ||
Sbjct 2611 CAAAGGCTCATTTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTTGCGGACTACAAC 2670
Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025
|| |||||| ||||||| ||
Sbjct 2671 ATCCAGAAAGAGTCGACGCTCCA 2693
>seq10
Length=33665772
Score = 87.8 bits (96), Expect = 3e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||||||||| ||||| || | || || || || || || | ||||| ||| |||
Sbjct 14516247 ATGCAAATATTCATTAAGACTCTCACCGGCAAGACCATCACCCTTGAAGTTGAATCTTCC 14516188
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| |||| || |||||| |||||| ||||||||||| || || || || || ||
Sbjct 14516187 GATACTATTGATAATGTGAAAGCTAAAATTCAAGATAAAGAGGGTATTCCACCGGACCAG 14516128
Query 155943 CAAAGATTGATTTATGCCGGTAAGCA 155968
||||| || || | ||| || || ||
Sbjct 14516127 CAAAGGTTAATCTTTGCTGGGAAACA 14516102
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731805591764400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |