Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq4576 87.8 3e-12 seq10 87.8 3e-12 >seq4576 Length=2771 Score = 87.8 bits (96), Expect = 3e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || | ||||||||||| || || | || |||||| || Sbjct 2491 ATGCAGATCTTTGTTAAGACGCTCACTGGAAAAACCATCACCCTCGAGGTCGAAAGCTCC 2550 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| ||| ||| || || || ||||| ||||| ||||| || || Sbjct 2551 GACACCATCGACAACGTCAAAGCTAAGATCCAGGACAAAGAGGGCATCCCTCCCGACCAG 2610 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | |||| || || ||||||||||| ||| | | || | | || || || Sbjct 2611 CAAAGGCTCATTTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTTGCGGACTACAAC 2670 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || |||||| ||||||| || Sbjct 2671 ATCCAGAAAGAGTCGACGCTCCA 2693 >seq10 Length=33665772 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||||||||| ||||| || | || || || || || || | ||||| ||| ||| Sbjct 14516247 ATGCAAATATTCATTAAGACTCTCACCGGCAAGACCATCACCCTTGAAGTTGAATCTTCC 14516188 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || |||||| |||||| ||||||||||| || || || || || || Sbjct 14516187 GATACTATTGATAATGTGAAAGCTAAAATTCAAGATAAAGAGGGTATTCCACCGGACCAG 14516128 Query 155943 CAAAGATTGATTTATGCCGGTAAGCA 155968 ||||| || || | ||| || || || Sbjct 14516127 CAAAGGTTAATCTTTGCTGGGAAACA 14516102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731805591764400