Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq9 131 5e-25 seq1022 125 2e-23 seq7 118 3e-21 seq1 118 3e-21 seq11 114 4e-20 >seq9 Length=34148863 Score = 131 bits (144), Expect = 5e-25 Identities = 264/383 (69%), Gaps = 9/383 (2%) Strand=Plus/Plus Query 288964 TGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACC-CGAATCGCTCCt 289022 ||||| || || ||| | |||||||||||||||| || | || ||| ||| | Sbjct 2344063 TGATTCAGCGTGCTTTCTCGTTCATCATTTGAACCTGAGAAACCTCCACGAC---CTC-T 2344118 Query 289023 ttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 | | ||||| |||||||||||| ||||||||||| | || || | | ||||| || Sbjct 2344119 TGCTCGACCAATAGCATCAATTTCATCAATGAAAATTATACTAGGGGCACACTGTCTTGC 2344178 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 | ||| || | |||||| | ||||| ||||| ||||||| ||||||| | || || Sbjct 2344179 TTCTTGAAACAAGTTTCTTACCCTGGATGGTCCAACACCAACAAACATTTCCATGAAATC 2344238 Query 289143 AGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAA 289201 ||| | || | |||| | || | ||||| | |||||| || ||| | || |||| Sbjct 2344239 TGAACCAGA-AATTGACAGAAACGGTACATCAGATTCGCCCGCAGTTGCTTTTGCAAGAA 2344297 Query 289202 GTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCA 289260 | ||||| ||||| ||||| || || | | || | || ||||||| ||| || |||| Sbjct 2344298 GCGTCTTTCCTGTACCAGGAGGACCTACAAGAAGGGCACCTTTTGGTATTTTAGCTCCCA 2344357 Query 289261 GCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTT 289320 | || ||| |||| ||| | || | || | |||| ||| | ||| | ||| Sbjct 2344358 G-TTCCTCATACTTCTTAGGATTTTTCAGGAAATGCACAAACTCCATTATTTCTTGTTTG 2344416 Query 289321 GCCTCATCACATCCTGCTACATC 289343 || |||||||| || || ||||| Sbjct 2344417 GCTTCATCACAGCCAGCAACATC 2344439 >seq1022 Length=749713 Score = 125 bits (138), Expect = 2e-23 Identities = 346/516 (67%), Gaps = 32/516 (6%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 || ||||| | |||| ||| || || | |||| || || || | ||| |||||| Sbjct 665410 CTGTCAAATCGCCCAGGTCGAAGCAAAGCAGAATCTAGAATGTCTGCGCGGTTGGTTGCT 665469 Query 288910 GCCAATACAACAATAGATTCGGTTTGCTT--AAATCCATCCATACTTGTTAAAATTTGAT 288967 || | |||| ||| | | |||| | ||| |||||||| || |||| |||| Sbjct 665470 GCGATCACAATTATACCT--GTATTGCCTTCAAAGCCATCCATCTCGGTCAAAAGCTGAT 665527 Query 288968 TAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATC--GCTCCtttt 289025 |||| || |||||||||||||||||| |||| | |||| || | |||| || Sbjct 665528 TAAGAGTCTGTTCCCTTTCATCATTT---CCTCCT-------CCGATTCCTGTTCCTCTT 665577 Query 289026 tt--tACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083 | | |||||||||||||| || |||| || | | || |||| ||| | | | || Sbjct 665578 TGCCTTCCAACAGCATCAATCTCATCAACAAACACAATGCAAGGAGCATTCTCTTTGGCC 665637 Query 289084 AT--TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATT 289141 | || ||| | || | || || || || |||| ||||||| ||||||||||||||| Sbjct 665638 TTCTTGAAAAGA--TCACGAACTCGAGAAGCACCAACACCAACAAACATTTCTACAAATT 665695 Query 289142 CAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 |||| |||| | |||| | |||| ||| ||| || || || | |||| | || || Sbjct 665696 CAGATCCGGA-AATTGAGAAAAATGGGACACCTGCCTCACCAGCAATTGCCTTAGCAAGC 665754 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGG--TACTTTTGCCC 289258 | ||||| || ||||| || || || | | || || || || || ||| ||| Sbjct 665755 AAGGTCTTCCCAGTTCCTGGAGGACCAACAAGAAGGACACCTTTAGGGATACGGGCACCC 665814 Query 289259 -CAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCC-TCAAGTTCATA 289316 | |||| || || | || || | || | || || || | |||| | ||| || | Sbjct 665815 ACTGCAG---TAAATCTTTCTGGCTTTTTCAGGAACTCGACTACTTCCATGAAG-TCTTG 665870 Query 289317 TTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 |||||| ||||| ||| || |||||| ||||||| Sbjct 665871 TTTTGCTTCATCTACTCCAGCAACATCATCAAAAGT 665906 >seq7 Length=28617404 Score = 118 bits (130), Expect = 3e-21 Identities = 343/514 (67%), Gaps = 28/514 (5%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 || ||||| | ||||| ||| ||| || | || | || || || | ||| || ||| Sbjct 3465429 CTGTCAAATCGACCAGGCCGAAGTAAAGCAGAATCCAGAATGTCTGCACGGTTGGTCGCT 3465370 Query 288910 GCCAATACAACAATAG-ATTCGGTTTGCTT-AAATCCATCCATACTTGTTAAAATTTGAT 288967 || | |||| ||| | | ||| ||| ||| |||||||| || |||| |||| Sbjct 3465369 GCAATGACAATTATACCAGTA--TTTCCTTCAAAGCCATCCATTTCAGTCAAAAGCTGAT 3465312 Query 288968 TAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATC--GCTCCtttt 289025 | || || ||||| |||||||||||| |||| | || | || | |||| || Sbjct 3465311 TGAGAGTCTGTTCTCTTTCATCATTT---CCTCCT-------CCAATTCCTGTTCCTCTT 3465262 Query 289026 tt--tACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083 | ||||||| |||||||| || |||| || | | ||| |||| ||| | | | || Sbjct 3465261 TGCCTACCAACGGCATCAATCTCATCAACAAACACAATACAAGGAGCATTCTCTTTGGCC 3465202 Query 289084 ATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCA 289143 | || | || | || || || || || | ||||||| ||||||||||||||||| Sbjct 3465201 TTCTTGAAAAGGTCACGAACTCGTGAAGCACCGACACCAACAAACATTTCTACAAATTCA 3465142 Query 289144 GAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 || | || | |||| | |||| ||| |||||| || || | |||| | || || || Sbjct 3465141 GATCCTGA-AATTGAGAAAAATGGGACACCTGCTTCACCAGCAATTGCCTTGGCAAGCAG 3465083 Query 289203 TGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGG--TAC-TTTTGCCCC 289259 ||||| || ||||| || || || || || || || || || ||| | || | Sbjct 3465082 AGTCTTTCCAGTTCCTGGAGGACCTATTAGAAGGACACCTTTAGGAATACGGGCTCCCAC 3465023 Query 289260 AGCAGACTTATATTTCTCAGGGCTCTTT-AAAAATTCTACAATTTCCTCAAGTTCATATT 289318 |||| | || |||| ||||| ||| | || || || | |||| || || | || Sbjct 3465022 TGCAG---TGAATCTCTC-GGGCTTTTTCAGGAACTCAACTACTTCCATAAAGTCCTGTT 3464967 Query 289319 TTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 |||| ||||| ||| || |||||| ||||||| Sbjct 3464966 TTGCTTCATCTACTCCAGCAACATCATCAAAAGT 3464933 >seq1 Length=27573629 Score = 118 bits (130), Expect = 3e-21 Identities = 175/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 || || || ||||| || | ||||||||| || |||||||||||| | ||| | ||| Sbjct 4727283 GCTATTAGTCCACATTTCTCACACACATGAACCCTGTAAGCATCACTTTGATCAAACAGC 4727224 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 || |||| |||| | | ||||| |||| |||||| || || |||||||| ||||| Sbjct 4727223 CGTTCCTTCAAGAAGTGTGCAGCACCATGTGCAATCATGCAGTCTCGCTCCATCTCACCA 4727164 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATA 251583 || |||||||||||||| |||| | || || |||||||| | || || | || | Sbjct 4727163 AACCGAAGACCACCATCTCGAGAGCGTCCTTCTGCAGGCTGTCTGGTAAGTATCTGCACA 4727104 Query 251584 GGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAAT 251643 ||||| || ||| |||||||| ||||| ||||| || | ||| || || Sbjct 4727103 GGACCACGCCCTCGAGAATGGATCTTATCATCGACCATGTGCTTCAGTCTCTGATAATAT 4727044 Query 251644 GCGGGACC 251651 | ||||| Sbjct 4727043 GTAGGACC 4727036 Score = 118 bits (130), Expect = 3e-21 Identities = 233/341 (68%), Gaps = 4/341 (1%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || || |||||| || ||| |||||||||||| ||| | | |||||| Sbjct 11249887 ATTTCTGACAGTACCATCATATTTAACCATTATGTCTTCCATAGCCTTTACAAGACGACG 11249828 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 || || || || || ||| || || ||||| |||||||| | ||| | | |||||| Sbjct 11249827 TTGGATGTAGCCCGTCTCAGAAGTCTTGACAGCAGTATCAATCAAACCTTCCCTACCACC 11249768 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||| ||||| || || | ||||| ||| | ||| | || | || |||| || || Sbjct 11249767 CATGGCATGAAAAAAGAACTCTTGTGGTGTCAACCCACGAAGGTATGAATTCTCCACAAA 11249708 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC--TCA 302775 |||||| || ||| || ||| || || || || |||| || | | || | | Sbjct 11249707 ACCACGACTTTCAGGCCCATAATCGTCTTTAGTGAAATGAGGCAATGTTC-GATCAATGA 11249649 Query 302776 TAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGC 302835 | || | || || || || || ||||| |||||||| |||| || | | ||||||| Sbjct 11249648 -AACCAAAGGGTATTCGTTTGCCCTCAACATTCTGCTGCCCCACACAGGCAGTCATCTGT 11249590 Query 302836 GAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 || ||||| | | ||| || || || |||||| | ||||| Sbjct 11249589 GAGATATTGATAAAACTACCTTTTGATCCAGCAGTAACCAT 11249549 >seq11 Length=25514024 Score = 114 bits (126), Expect = 4e-20 Identities = 258/382 (68%), Gaps = 7/382 (2%) Strand=Plus/Minus Query 288964 TGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtt 289023 || || ||||| ||| | |||||||||||||||| ||| ||| | | ||| Sbjct 23769177 TGGTTCAGTGTGCTTTCTCGTTCATCATTTGAACCT---GAAAAACCTCCACGACCTCTT 23769121 Query 289024 tttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083 | ||||| |||||||||||| ||||||||||| | || |||| | ||||| || Sbjct 23769120 GCTCGACCAATAGCATCAATTTCATCAATGAAAATTATACTAGGAGCACACTGTCTAGCT 23769061 Query 289084 ATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCA 289143 | ||| || | ||| || | || | ||||| |||||| ||||||| | || || Sbjct 23769060 TCTTGAAACAAGTTTCTCACCCTGGCCGGTCCAACGCCAACAAACATTTCCATGAAATCT 23769001 Query 289144 GAAGCGGATACTTGAATGAA-TGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 ||| | || | |||| ||| || ||| | ||| ||||| ||| |||| ||||| Sbjct 23769000 GAACCAGAAA-TTGATAGAAATGGCACACCAGATTCACCTGCAGTTGCTTTCGCTAGAAG 23768942 Query 289203 TGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAG 289261 |||||| ||||| ||||| || || | | || |||| || || | || || ||||| Sbjct 23768941 TGTCTTTCCTGTACCAGGAGGACCTACAAGAAGGGCTCCTTTAGGAATCTTAGCTCCCAG 23768882 Query 289262 CAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTG 289321 || ||| |||| ||| | || | || | |||| ||| | ||| | ||| | Sbjct 23768881 -TTCCTCATACTTCTTAGGATTTTTAAGGAAGTGCACAAACTCCATTATTTCCTGTTTAG 23768823 Query 289322 CCTCATCACATCCTGCTACATC 289343 | |||||||| || || ||||| Sbjct 23768822 CTTCATCACAGCCAGCAACATC 23768801 Score = 93.3 bits (102), Expect = 1e-13 Identities = 90/115 (78%), Gaps = 3/115 (3%) Strand=Plus/Minus Query 156039 ATAGCAAAACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTG 156095 ||| | ||| |||| || || |||||||| ||||| ||||| |||||||| | |||| Sbjct 20144408 ATAACCAAATTACCCTTTCTTTTGCCACCTCCTTGATCAACATAACGAGCAGTATCATTG 20144349 Query 156096 AAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATAT 156150 || || | |||||| |||| |||||||||||| || ||||| || || || |||| Sbjct 20144348 AACACCCTTAGCATGGGAACAATACCATTGGATGTTCCATTTGTACCACGGATAT 20144294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471680712224283