Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq9 131 5e-25
seq1022 125 2e-23
seq7 118 3e-21
seq1 118 3e-21
seq11 114 4e-20
>seq9
Length=34148863
Score = 131 bits (144), Expect = 5e-25
Identities = 264/383 (69%), Gaps = 9/383 (2%)
Strand=Plus/Plus
Query 288964 TGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACC-CGAATCGCTCCt 289022
||||| || || ||| | |||||||||||||||| || | || ||| ||| |
Sbjct 2344063 TGATTCAGCGTGCTTTCTCGTTCATCATTTGAACCTGAGAAACCTCCACGAC---CTC-T 2344118
Query 289023 ttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082
| | ||||| |||||||||||| ||||||||||| | || || | | ||||| ||
Sbjct 2344119 TGCTCGACCAATAGCATCAATTTCATCAATGAAAATTATACTAGGGGCACACTGTCTTGC 2344178
Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142
| ||| || | |||||| | ||||| ||||| ||||||| ||||||| | || ||
Sbjct 2344179 TTCTTGAAACAAGTTTCTTACCCTGGATGGTCCAACACCAACAAACATTTCCATGAAATC 2344238
Query 289143 AGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAA 289201
||| | || | |||| | || | ||||| | |||||| || ||| | || ||||
Sbjct 2344239 TGAACCAGA-AATTGACAGAAACGGTACATCAGATTCGCCCGCAGTTGCTTTTGCAAGAA 2344297
Query 289202 GTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCA 289260
| ||||| ||||| ||||| || || | | || | || ||||||| ||| || ||||
Sbjct 2344298 GCGTCTTTCCTGTACCAGGAGGACCTACAAGAAGGGCACCTTTTGGTATTTTAGCTCCCA 2344357
Query 289261 GCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTT 289320
| || ||| |||| ||| | || | || | |||| ||| | ||| | |||
Sbjct 2344358 G-TTCCTCATACTTCTTAGGATTTTTCAGGAAATGCACAAACTCCATTATTTCTTGTTTG 2344416
Query 289321 GCCTCATCACATCCTGCTACATC 289343
|| |||||||| || || |||||
Sbjct 2344417 GCTTCATCACAGCCAGCAACATC 2344439
>seq1022
Length=749713
Score = 125 bits (138), Expect = 2e-23
Identities = 346/516 (67%), Gaps = 32/516 (6%)
Strand=Plus/Plus
Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909
|| ||||| | |||| ||| || || | |||| || || || | ||| ||||||
Sbjct 665410 CTGTCAAATCGCCCAGGTCGAAGCAAAGCAGAATCTAGAATGTCTGCGCGGTTGGTTGCT 665469
Query 288910 GCCAATACAACAATAGATTCGGTTTGCTT--AAATCCATCCATACTTGTTAAAATTTGAT 288967
|| | |||| ||| | | |||| | ||| |||||||| || |||| ||||
Sbjct 665470 GCGATCACAATTATACCT--GTATTGCCTTCAAAGCCATCCATCTCGGTCAAAAGCTGAT 665527
Query 288968 TAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATC--GCTCCtttt 289025
|||| || |||||||||||||||||| |||| | |||| || | |||| ||
Sbjct 665528 TAAGAGTCTGTTCCCTTTCATCATTT---CCTCCT-------CCGATTCCTGTTCCTCTT 665577
Query 289026 tt--tACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083
| | |||||||||||||| || |||| || | | || |||| ||| | | | ||
Sbjct 665578 TGCCTTCCAACAGCATCAATCTCATCAACAAACACAATGCAAGGAGCATTCTCTTTGGCC 665637
Query 289084 AT--TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATT 289141
| || ||| | || | || || || || |||| ||||||| |||||||||||||||
Sbjct 665638 TTCTTGAAAAGA--TCACGAACTCGAGAAGCACCAACACCAACAAACATTTCTACAAATT 665695
Query 289142 CAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200
|||| |||| | |||| | |||| ||| ||| || || || | |||| | || ||
Sbjct 665696 CAGATCCGGA-AATTGAGAAAAATGGGACACCTGCCTCACCAGCAATTGCCTTAGCAAGC 665754
Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGG--TACTTTTGCCC 289258
| ||||| || ||||| || || || | | || || || || || ||| |||
Sbjct 665755 AAGGTCTTCCCAGTTCCTGGAGGACCAACAAGAAGGACACCTTTAGGGATACGGGCACCC 665814
Query 289259 -CAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCC-TCAAGTTCATA 289316
| |||| || || | || || | || | || || || | |||| | ||| || |
Sbjct 665815 ACTGCAG---TAAATCTTTCTGGCTTTTTCAGGAACTCGACTACTTCCATGAAG-TCTTG 665870
Query 289317 TTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352
|||||| ||||| ||| || |||||| |||||||
Sbjct 665871 TTTTGCTTCATCTACTCCAGCAACATCATCAAAAGT 665906
>seq7
Length=28617404
Score = 118 bits (130), Expect = 3e-21
Identities = 343/514 (67%), Gaps = 28/514 (5%)
Strand=Plus/Minus
Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909
|| ||||| | ||||| ||| ||| || | || | || || || | ||| || |||
Sbjct 3465429 CTGTCAAATCGACCAGGCCGAAGTAAAGCAGAATCCAGAATGTCTGCACGGTTGGTCGCT 3465370
Query 288910 GCCAATACAACAATAG-ATTCGGTTTGCTT-AAATCCATCCATACTTGTTAAAATTTGAT 288967
|| | |||| ||| | | ||| ||| ||| |||||||| || |||| ||||
Sbjct 3465369 GCAATGACAATTATACCAGTA--TTTCCTTCAAAGCCATCCATTTCAGTCAAAAGCTGAT 3465312
Query 288968 TAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATC--GCTCCtttt 289025
| || || ||||| |||||||||||| |||| | || | || | |||| ||
Sbjct 3465311 TGAGAGTCTGTTCTCTTTCATCATTT---CCTCCT-------CCAATTCCTGTTCCTCTT 3465262
Query 289026 tt--tACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083
| ||||||| |||||||| || |||| || | | ||| |||| ||| | | | ||
Sbjct 3465261 TGCCTACCAACGGCATCAATCTCATCAACAAACACAATACAAGGAGCATTCTCTTTGGCC 3465202
Query 289084 ATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCA 289143
| || | || | || || || || || | ||||||| |||||||||||||||||
Sbjct 3465201 TTCTTGAAAAGGTCACGAACTCGTGAAGCACCGACACCAACAAACATTTCTACAAATTCA 3465142
Query 289144 GAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202
|| | || | |||| | |||| ||| |||||| || || | |||| | || || ||
Sbjct 3465141 GATCCTGA-AATTGAGAAAAATGGGACACCTGCTTCACCAGCAATTGCCTTGGCAAGCAG 3465083
Query 289203 TGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGG--TAC-TTTTGCCCC 289259
||||| || ||||| || || || || || || || || || ||| | || |
Sbjct 3465082 AGTCTTTCCAGTTCCTGGAGGACCTATTAGAAGGACACCTTTAGGAATACGGGCTCCCAC 3465023
Query 289260 AGCAGACTTATATTTCTCAGGGCTCTTT-AAAAATTCTACAATTTCCTCAAGTTCATATT 289318
|||| | || |||| ||||| ||| | || || || | |||| || || | ||
Sbjct 3465022 TGCAG---TGAATCTCTC-GGGCTTTTTCAGGAACTCAACTACTTCCATAAAGTCCTGTT 3464967
Query 289319 TTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352
|||| ||||| ||| || |||||| |||||||
Sbjct 3464966 TTGCTTCATCTACTCCAGCAACATCATCAAAAGT 3464933
>seq1
Length=27573629
Score = 118 bits (130), Expect = 3e-21
Identities = 175/248 (71%), Gaps = 0/248 (0%)
Strand=Plus/Minus
Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463
|| || || ||||| || | ||||||||| || |||||||||||| | ||| | |||
Sbjct 4727283 GCTATTAGTCCACATTTCTCACACACATGAACCCTGTAAGCATCACTTTGATCAAACAGC 4727224
Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523
|| |||| |||| | | ||||| |||| |||||| || || |||||||| |||||
Sbjct 4727223 CGTTCCTTCAAGAAGTGTGCAGCACCATGTGCAATCATGCAGTCTCGCTCCATCTCACCA 4727164
Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATA 251583
|| |||||||||||||| |||| | || || |||||||| | || || | || |
Sbjct 4727163 AACCGAAGACCACCATCTCGAGAGCGTCCTTCTGCAGGCTGTCTGGTAAGTATCTGCACA 4727104
Query 251584 GGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAAT 251643
||||| || ||| |||||||| ||||| ||||| || | ||| || ||
Sbjct 4727103 GGACCACGCCCTCGAGAATGGATCTTATCATCGACCATGTGCTTCAGTCTCTGATAATAT 4727044
Query 251644 GCGGGACC 251651
| |||||
Sbjct 4727043 GTAGGACC 4727036
Score = 118 bits (130), Expect = 3e-21
Identities = 233/341 (68%), Gaps = 4/341 (1%)
Strand=Plus/Minus
Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597
|||||| || || |||||| || ||| |||||||||||| ||| | | ||||||
Sbjct 11249887 ATTTCTGACAGTACCATCATATTTAACCATTATGTCTTCCATAGCCTTTACAAGACGACG 11249828
Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657
|| || || || || ||| || || ||||| |||||||| | ||| | | ||||||
Sbjct 11249827 TTGGATGTAGCCCGTCTCAGAAGTCTTGACAGCAGTATCAATCAAACCTTCCCTACCACC 11249768
Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717
||| ||||| || || | ||||| ||| | ||| | || | || |||| || ||
Sbjct 11249767 CATGGCATGAAAAAAGAACTCTTGTGGTGTCAACCCACGAAGGTATGAATTCTCCACAAA 11249708
Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC--TCA 302775
|||||| || ||| || ||| || || || || |||| || | | || | |
Sbjct 11249707 ACCACGACTTTCAGGCCCATAATCGTCTTTAGTGAAATGAGGCAATGTTC-GATCAATGA 11249649
Query 302776 TAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGC 302835
| || | || || || || || ||||| |||||||| |||| || | | |||||||
Sbjct 11249648 -AACCAAAGGGTATTCGTTTGCCCTCAACATTCTGCTGCCCCACACAGGCAGTCATCTGT 11249590
Query 302836 GAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876
|| ||||| | | ||| || || || |||||| | |||||
Sbjct 11249589 GAGATATTGATAAAACTACCTTTTGATCCAGCAGTAACCAT 11249549
>seq11
Length=25514024
Score = 114 bits (126), Expect = 4e-20
Identities = 258/382 (68%), Gaps = 7/382 (2%)
Strand=Plus/Minus
Query 288964 TGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtt 289023
|| || ||||| ||| | |||||||||||||||| ||| ||| | | |||
Sbjct 23769177 TGGTTCAGTGTGCTTTCTCGTTCATCATTTGAACCT---GAAAAACCTCCACGACCTCTT 23769121
Query 289024 tttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083
| ||||| |||||||||||| ||||||||||| | || |||| | ||||| ||
Sbjct 23769120 GCTCGACCAATAGCATCAATTTCATCAATGAAAATTATACTAGGAGCACACTGTCTAGCT 23769061
Query 289084 ATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCA 289143
| ||| || | ||| || | || | ||||| |||||| ||||||| | || ||
Sbjct 23769060 TCTTGAAACAAGTTTCTCACCCTGGCCGGTCCAACGCCAACAAACATTTCCATGAAATCT 23769001
Query 289144 GAAGCGGATACTTGAATGAA-TGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202
||| | || | |||| ||| || ||| | ||| ||||| ||| |||| |||||
Sbjct 23769000 GAACCAGAAA-TTGATAGAAATGGCACACCAGATTCACCTGCAGTTGCTTTCGCTAGAAG 23768942
Query 289203 TGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAG 289261
|||||| ||||| ||||| || || | | || |||| || || | || || |||||
Sbjct 23768941 TGTCTTTCCTGTACCAGGAGGACCTACAAGAAGGGCTCCTTTAGGAATCTTAGCTCCCAG 23768882
Query 289262 CAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTG 289321
|| ||| |||| ||| | || | || | |||| ||| | ||| | ||| |
Sbjct 23768881 -TTCCTCATACTTCTTAGGATTTTTAAGGAAGTGCACAAACTCCATTATTTCCTGTTTAG 23768823
Query 289322 CCTCATCACATCCTGCTACATC 289343
| |||||||| || || |||||
Sbjct 23768822 CTTCATCACAGCCAGCAACATC 23768801
Score = 93.3 bits (102), Expect = 1e-13
Identities = 90/115 (78%), Gaps = 3/115 (3%)
Strand=Plus/Minus
Query 156039 ATAGCAAAACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTG 156095
||| | ||| |||| || || |||||||| ||||| ||||| |||||||| | ||||
Sbjct 20144408 ATAACCAAATTACCCTTTCTTTTGCCACCTCCTTGATCAACATAACGAGCAGTATCATTG 20144349
Query 156096 AAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATAT 156150
|| || | |||||| |||| |||||||||||| || ||||| || || || ||||
Sbjct 20144348 AACACCCTTAGCATGGGAACAATACCATTGGATGTTCCATTTGTACCACGGATAT 20144294
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471680712224283
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