Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq9 149 7e-31 seq1063 138 1e-27 seq10 129 6e-25 seq1382 116 4e-21 seq1042 114 1e-20 seq4 105 7e-18 seq1035 104 3e-17 seq1024 84.2 2e-11 >seq9 Length=34148863 Score = 149 bits (164), Expect = 7e-31 Identities = 181/244 (74%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 157907 TACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 157966 ||||| | | ||||| |||||| | | | | |||||||| || ||||| ||| Sbjct 1506917 TACATTGATCATGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGATTGCTGTT 1506976 Query 157967 GCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAA 158026 |||||||| ||||| || || || || ||||||| ||| | |||| ||| | |||||| Sbjct 1506977 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 1507036 Query 158027 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGC-TTGT 158085 || |||||| |||| ||||||| | || || ||| | | ||| |||| |||| |||| Sbjct 1507037 GGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTATTGT 1507095 Query 158086 ATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGT 158145 ||| | ||||||||||||||||||||||| | | | || ||| | ||||| |||| || Sbjct 1507096 ATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGTGT 1507155 Query 158146 ATTC 158149 |||| Sbjct 1507156 ATTC 1507159 >seq1063 Length=431445 Score = 138 bits (152), Expect = 1e-27 Identities = 237/341 (70%), Gaps = 21/341 (6%) Strand=Plus/Minus Query 158039 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 158098 |||| ||||||| |||| || ||||||||||| ||| |||| ||||||| | |||||| Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166 Query 158099 CACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTG--CTGGGGTATTCGGTGGAT 158156 ||||||||||||||||| | || || ||| | ||||| | |||| |||||||| Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 54111 Query 158157 CTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTG 158216 | || | ||||||| || | || || | || | | |||| |||| Sbjct 54110 CCCT----AGTACTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTG 54055 Query 158217 AAACAGAGTCACAG--AACTACGGTTACAAGTTCGGTCAAGAGGAAGAGAC------CTA 158268 ||| || || | | | | || || |||||| ||||||||||||| || Sbjct 54054 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 53997 Query 158269 TAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAA 158328 | || || || || ||||| || || | || |||||||||||||| ||| ||||| Sbjct 53996 GAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAA 53937 Query 158329 CAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTG 158369 |||||| ||||| || || |||||| | ||||| ||||||| Sbjct 53936 CAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896 >seq10 Length=33665772 Score = 129 bits (142), Expect = 6e-25 Identities = 235/341 (69%), Gaps = 21/341 (6%) Strand=Plus/Plus Query 158039 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 158098 |||| ||||||| | || || ||||||||||| |||| |||| |||||||||| |||||| Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954 Query 158099 CACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTG--CTGGGGTATTCGGTGGAT 158156 ||||||||||||||||| | || || ||| | ||||| | |||| |||||||| Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 4333009 Query 158157 CTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTG 158216 | || | ||||||| || | || | || | || | | |||| |||| Sbjct 4333010 CCCT----AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065 Query 158217 AAACAGAGTCACAG--AACTACGGTTACAAGTTCGGTCAAGAGGAAGAGAC------CTA 158268 ||| || || | | | | || || |||||| ||||||||||||| || Sbjct 4333066 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 4333123 Query 158269 TAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAA 158328 | ||| || | || ||||| || || | || |||| || |||||| ||| ||||| Sbjct 4333124 GAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAA 4333183 Query 158329 CAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTG 158369 |||||| ||| | || |||||| | ||||| ||||||| Sbjct 4333184 CAACTCGACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224 >seq1382 Length=172696 Score = 116 bits (128), Expect = 4e-21 Identities = 237/345 (69%), Gaps = 19/345 (6%) Strand=Plus/Plus Query 158097 AACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCT--GGGGTATTCGGTGG 158154 ||||||||||||||||||| || || | ||| | ||| | ||| || |||||||| || Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554 Query 158155 ATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGA 158213 || || ||| ||||||||| || | || || || | | | || | ||||| | Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCA 123613 Query 158214 CTGAAACAGAGTCA-CAGAACTACGGTTACAAGTTCGGTCAAGA----GGAAGAGACCTA 158268 |||||| || || || | | ||||||| ||||||||||| ||||||||| || Sbjct 123614 CTGAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTA 123672 Query 158269 TAACA-----TCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCA 158323 || | | || || || ||||| || || | || |||||| ||||||| ||| Sbjct 123673 CAATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGT 123732 Query 158324 TTCAACAACTCCCG----TTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCAT 158379 ||||||||||| || ||| | || ||| | || || ||||| ||| | || || Sbjct 123733 TTCAACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTAT 123792 Query 158380 CTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAA 158424 |||| |||| || | || | ||| ||||| |||||||| || Sbjct 123793 CTGGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 >seq1042 Length=564079 Score = 114 bits (126), Expect = 1e-20 Identities = 99/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 158021 GGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATG 158080 |||||||| | | || |||| |||||||| || |||||||||||||| ||| |||| Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801 Query 158081 CTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCT 158140 |||||||||| || || |||||||||||||||||||| || | ||| | ||| ||||| Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCT 550741 Query 158141 GGG 158143 ||| Sbjct 550740 GGG 550738 >seq4 Length=30051516 Score = 105 bits (116), Expect = 7e-18 Identities = 120/160 (75%), Gaps = 6/160 (4%) Strand=Plus/Plus Query 158404 CACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGG 158463 ||| ||||| |||||||| || |||||||| |||||||| ||| | |||| ||||||| Sbjct 1282770 CACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTCAGGG 1282829 Query 158464 TCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGT----ATGGAAG 158519 |||||| | || || ||| ||| | | || || ||| ||||||| ||||||| Sbjct 1282830 TCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATGGAAG 1282887 Query 158520 TTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCT 158559 | || ||||| ||||| || || |||||||| | ||||| Sbjct 1282888 TAATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927 >seq1035 Length=594915 Score = 104 bits (114), Expect = 3e-17 Identities = 264/396 (67%), Gaps = 32/396 (8%) Strand=Plus/Plus Query 159768 TTTGGGGTGGCAGCAATCTTTAGAT---TCCTGTTGTTCCTTCAAGGATTTCACAACTGG 159824 ||||| || ||||| || ||| ||| |||| | |||| || | | | || ||| Sbjct 236996 TTTGGTGTAGCAGCTATATTTCGATGAATCCTCTGATTCC---AACGGTGGAATAATTGG 237052 Query 159825 ACGTTAAATCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGT 159884 ||||| || || || |||||||||||||| || || |||| | || || || | Sbjct 237053 ACGTTGAACCCTTTGAATATGATGGGAGTTTA-GGAGTATTAGGCGCTGCTCTGCTATGC 237111 Query 159885 GCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACC 159944 || || ||||| ||||| | ||||| | | |||||||| | |||||||| Sbjct 237112 GCTATTCATGGT----CTGTATAAAACACTTTATTCGAAGATGGTAACGGTGCAAATACA 237167 Query 159945 T----TTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAA 160000 | || || ||| | ||||||||| || |||||||| || ||||||||||| || Sbjct 237168 TACTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTAA 237227 Query 160001 CCGCTTCTGGTCGCAGATC-----TTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCAT 160055 ||| || ||||| || ||| || || |||| ||||| || || || |||| Sbjct 237228 CCGTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGGC----- 237282 Query 160056 TTCTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATT--GGCATTA--T 160111 ||| ||||| ||||| | || | ||| | |||| ||||| || | || | Sbjct 237283 --CTT-ATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGGTAGTAAGT 237339 Query 160112 TGGCCTTGCTCTTAATCTTCGTGCTTACGATTTCGT 160147 || || ||||| ||||| ||||| || || ||||| Sbjct 237340 CGGTCTGGCTCTGAATCTACGTGCCTATGACTTCGT 237375 >seq1024 Length=717246 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 158474 AACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGT 158533 ||||| ||||| ||| | | ||||| ||| |||||||||||||| |||||||| ||| Sbjct 156788 AACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGT 156847 Query 158534 AACGCACACAACTTCCCACTCGACCT 158559 || || ||||||||||| || ||||| Sbjct 156848 AATGCTCACAACTTCCCTCTAGACCT 156873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548324641877880