Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_021530.1
Length=171407
Score E
Sequences producing significant alignments: (Bits) Value
seq9 149 7e-31
seq1063 138 1e-27
seq10 129 6e-25
seq1382 116 4e-21
seq1042 114 1e-20
seq4 105 7e-18
seq1035 104 3e-17
seq1024 84.2 2e-11
>seq9
Length=34148863
Score = 149 bits (164), Expect = 7e-31
Identities = 181/244 (74%), Gaps = 2/244 (1%)
Strand=Plus/Plus
Query 157907 TACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 157966
||||| | | ||||| |||||| | | | | |||||||| || ||||| |||
Sbjct 1506917 TACATTGATCATGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGATTGCTGTT 1506976
Query 157967 GCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAA 158026
|||||||| ||||| || || || || ||||||| ||| | |||| ||| | ||||||
Sbjct 1506977 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 1507036
Query 158027 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGC-TTGT 158085
|| |||||| |||| ||||||| | || || ||| | | ||| |||| |||| ||||
Sbjct 1507037 GGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTATTGT 1507095
Query 158086 ATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGT 158145
||| | ||||||||||||||||||||||| | | | || ||| | ||||| |||| ||
Sbjct 1507096 ATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGTGT 1507155
Query 158146 ATTC 158149
||||
Sbjct 1507156 ATTC 1507159
>seq1063
Length=431445
Score = 138 bits (152), Expect = 1e-27
Identities = 237/341 (70%), Gaps = 21/341 (6%)
Strand=Plus/Minus
Query 158039 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 158098
|||| ||||||| |||| || ||||||||||| ||| |||| ||||||| | ||||||
Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166
Query 158099 CACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTG--CTGGGGTATTCGGTGGAT 158156
||||||||||||||||| | || || ||| | ||||| | |||| ||||||||
Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 54111
Query 158157 CTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTG 158216
| || | ||||||| || | || || | || | | |||| ||||
Sbjct 54110 CCCT----AGTACTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTG 54055
Query 158217 AAACAGAGTCACAG--AACTACGGTTACAAGTTCGGTCAAGAGGAAGAGAC------CTA 158268
||| || || | | | | || || |||||| ||||||||||||| ||
Sbjct 54054 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 53997
Query 158269 TAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAA 158328
| || || || || ||||| || || | || |||||||||||||| ||| |||||
Sbjct 53996 GAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAA 53937
Query 158329 CAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTG 158369
|||||| ||||| || || |||||| | ||||| |||||||
Sbjct 53936 CAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896
>seq10
Length=33665772
Score = 129 bits (142), Expect = 6e-25
Identities = 235/341 (69%), Gaps = 21/341 (6%)
Strand=Plus/Plus
Query 158039 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 158098
|||| ||||||| | || || ||||||||||| |||| |||| |||||||||| ||||||
Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954
Query 158099 CACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTG--CTGGGGTATTCGGTGGAT 158156
||||||||||||||||| | || || ||| | ||||| | |||| ||||||||
Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 4333009
Query 158157 CTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTG 158216
| || | ||||||| || | || | || | || | | |||| ||||
Sbjct 4333010 CCCT----AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065
Query 158217 AAACAGAGTCACAG--AACTACGGTTACAAGTTCGGTCAAGAGGAAGAGAC------CTA 158268
||| || || | | | | || || |||||| ||||||||||||| ||
Sbjct 4333066 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 4333123
Query 158269 TAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAA 158328
| ||| || | || ||||| || || | || |||| || |||||| ||| |||||
Sbjct 4333124 GAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAA 4333183
Query 158329 CAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTG 158369
|||||| ||| | || |||||| | ||||| |||||||
Sbjct 4333184 CAACTCGACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224
>seq1382
Length=172696
Score = 116 bits (128), Expect = 4e-21
Identities = 237/345 (69%), Gaps = 19/345 (6%)
Strand=Plus/Plus
Query 158097 AACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCT--GGGGTATTCGGTGG 158154
||||||||||||||||||| || || | ||| | ||| | ||| || |||||||| ||
Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554
Query 158155 ATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGA 158213
|| || ||| ||||||||| || | || || || | | | || | ||||| |
Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCA 123613
Query 158214 CTGAAACAGAGTCA-CAGAACTACGGTTACAAGTTCGGTCAAGA----GGAAGAGACCTA 158268
|||||| || || || | | ||||||| ||||||||||| ||||||||| ||
Sbjct 123614 CTGAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTA 123672
Query 158269 TAACA-----TCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCA 158323
|| | | || || || ||||| || || | || |||||| ||||||| |||
Sbjct 123673 CAATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGT 123732
Query 158324 TTCAACAACTCCCG----TTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCAT 158379
||||||||||| || ||| | || ||| | || || ||||| ||| | || ||
Sbjct 123733 TTCAACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTAT 123792
Query 158380 CTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAA 158424
|||| |||| || | || | ||| ||||| |||||||| ||
Sbjct 123793 CTGGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837
>seq1042
Length=564079
Score = 114 bits (126), Expect = 1e-20
Identities = 99/123 (80%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 158021 GGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATG 158080
|||||||| | | || |||| |||||||| || |||||||||||||| ||| ||||
Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801
Query 158081 CTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCT 158140
|||||||||| || || |||||||||||||||||||| || | ||| | ||| |||||
Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCT 550741
Query 158141 GGG 158143
|||
Sbjct 550740 GGG 550738
>seq4
Length=30051516
Score = 105 bits (116), Expect = 7e-18
Identities = 120/160 (75%), Gaps = 6/160 (4%)
Strand=Plus/Plus
Query 158404 CACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGG 158463
||| ||||| |||||||| || |||||||| |||||||| ||| | |||| |||||||
Sbjct 1282770 CACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTCAGGG 1282829
Query 158464 TCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGT----ATGGAAG 158519
|||||| | || || ||| ||| | | || || ||| ||||||| |||||||
Sbjct 1282830 TCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATGGAAG 1282887
Query 158520 TTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCT 158559
| || ||||| ||||| || || |||||||| | |||||
Sbjct 1282888 TAATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927
>seq1035
Length=594915
Score = 104 bits (114), Expect = 3e-17
Identities = 264/396 (67%), Gaps = 32/396 (8%)
Strand=Plus/Plus
Query 159768 TTTGGGGTGGCAGCAATCTTTAGAT---TCCTGTTGTTCCTTCAAGGATTTCACAACTGG 159824
||||| || ||||| || ||| ||| |||| | |||| || | | | || |||
Sbjct 236996 TTTGGTGTAGCAGCTATATTTCGATGAATCCTCTGATTCC---AACGGTGGAATAATTGG 237052
Query 159825 ACGTTAAATCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGT 159884
||||| || || || |||||||||||||| || || |||| | || || || |
Sbjct 237053 ACGTTGAACCCTTTGAATATGATGGGAGTTTA-GGAGTATTAGGCGCTGCTCTGCTATGC 237111
Query 159885 GCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACC 159944
|| || ||||| ||||| | ||||| | | |||||||| | ||||||||
Sbjct 237112 GCTATTCATGGT----CTGTATAAAACACTTTATTCGAAGATGGTAACGGTGCAAATACA 237167
Query 159945 T----TTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAA 160000
| || || ||| | ||||||||| || |||||||| || ||||||||||| ||
Sbjct 237168 TACTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTAA 237227
Query 160001 CCGCTTCTGGTCGCAGATC-----TTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCAT 160055
||| || ||||| || ||| || || |||| ||||| || || || ||||
Sbjct 237228 CCGTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGGC----- 237282
Query 160056 TTCTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATT--GGCATTA--T 160111
||| ||||| ||||| | || | ||| | |||| ||||| || | || |
Sbjct 237283 --CTT-ATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGGTAGTAAGT 237339
Query 160112 TGGCCTTGCTCTTAATCTTCGTGCTTACGATTTCGT 160147
|| || ||||| ||||| ||||| || || |||||
Sbjct 237340 CGGTCTGGCTCTGAATCTACGTGCCTATGACTTCGT 237375
>seq1024
Length=717246
Score = 84.2 bits (92), Expect = 2e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 158474 AACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGT 158533
||||| ||||| ||| | | ||||| ||| |||||||||||||| |||||||| |||
Sbjct 156788 AACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGT 156847
Query 158534 AACGCACACAACTTCCCACTCGACCT 158559
|| || ||||||||||| || |||||
Sbjct 156848 AATGCTCACAACTTCCCTCTAGACCT 156873
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548324641877880
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