Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq9 141 1e-28 seq1382 136 4e-27 seq1035 113 5e-20 seq4 98.7 1e-15 seq1024 84.2 2e-11 >seq9 Length=34148863 Score = 141 bits (156), Expect = 1e-28 Identities = 182/246 (74%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 151165 TTACATGGGTCGTGAGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGC-G 151223 |||||| | || ||||| ||||| || | ||||||||||||| ||||| ||| | Sbjct 1506916 TTACATTGATCATGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGAT-TGCTG 1506974 Query 151224 TTGCATACTCTGCTCCAGTTGCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTC 151283 ||||||| || ||||| ||||| ||||| | ||| || ||| | |||| ||| | |||| Sbjct 1506975 TTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTC 1507034 Query 151284 AAGGTTCTTTCTCTGATGCAATGCCCCTGGGTATTTCTGGCACATTCAACTACATG-CTT 151342 |||| ||||||||||| ||||| | || || ||| ||| ||||||| |||| || Sbjct 1507035 AAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTATT 1507093 Query 151343 GTCTTCCAAGCAGAGCACAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTGGT 151402 || || | ||||| |||||||| || ||||| | | || ||| | ||||| ||||| Sbjct 1507094 GTATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGT 1507153 Query 151403 GTCTTC 151408 || ||| Sbjct 1507154 GTATTC 1507159 >seq1382 Length=172696 Score = 136 bits (150), Expect = 4e-27 Identities = 239/342 (70%), Gaps = 17/342 (5%) Strand=Plus/Plus Query 151358 CACAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCT--GGTGTCTTCGGTGGAT 151415 |||||||| || ||||| || || | ||| | ||| | ||| ||||| ||||| || | Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556 Query 151416 CGCTCTTCTCGGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCG 151475 | || ||| || ||||| ||||| |||| || ||| || | | || ||||| | Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616 Query 151476 AAAACGAGTCC-CAGAACTATGGTTACAAGTTCGGTCAAGAAGAAG----AGACCTACAA 151530 ||||||| || || | | ||||||| |||||||||||||||| |||| ||||| Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675 Query 151531 CA-----TCGTTGCCGCACACGGTTACTTTGGTCGTCTCATCTTCCAATACGCTTCCTTC 151585 | | || || || || ||||| || | || | ||| ||||||| ||| ||| Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735 Query 151586 AACAATTCCCGTTCG--CTGCACTTC--TTCCTCGCAGCATGGCCTGTTGTCGGTATCTG 151641 ||||| || || | || || | ||| | ||||| ||||| ||| | |||||||| Sbjct 123736 AACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCTG 123795 Query 151642 GTTCACTGCACTTGGTGTCAGCACCATGGCATTCAACCTGAA 151683 | |||| || | ||| | ||||||||||| |||||||| || Sbjct 123796 GGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 >seq1035 Length=594915 Score = 113 bits (124), Expect = 5e-20 Identities = 265/397 (67%), Gaps = 26/397 (7%) Strand=Plus/Plus Query 152832 TTTCGGGGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGAC 152891 ||| || || ||||| || || |||| | |||| | ||| | | | || ||||| Sbjct 236995 TTTTGGTGTAGCAGCTATATTTCGATGAATCCTCTGATTCCAACGGTGGAATAATTGGAC 237054 Query 152892 ATTGAATCCGTTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGC 152951 ||||| || || |||||||||| ||| ||| | || || | || |||| | || Sbjct 237055 GTTGAACCCTTTGAATATGATGGGAGTTT-AGGAGTATTAGGCGCTGCTCTGCTATGCGC 237113 Query 152952 CATTCATGGTGTTACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACTTT 153011 ||||||||| | ||| | || ||||| | |||||||| | ||||| || | Sbjct 237114 TATTCATGGTCT----GTATAAAACACTTTATTCGAAGATGGTAACGGTGCAAATACATA 237169 Query 153012 CAAA----GCTTTCGACAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACC 153067 | ||||| || ||||||| |||||||| ||||| ||||| |||||||||| Sbjct 237170 CTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTAACC 237229 Query 153068 GTTTCTGGTCCCAGAT-----ATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTT 153122 |||| |||||||| || || || |||||||| |||||| || ||| Sbjct 237230 GTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGG-------- 237281 Query 153123 CTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGG---AATCA-TTG 153178 | ||||| | |||||| | || | ||| | |||| | ||||||| | | | | | Sbjct 237282 CCTTATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGGTAGTAAGTCG 237341 Query 153179 GTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATC 153215 |||| ||||| ||||| ||||| || || || || || Sbjct 237342 GTCTGGCTCTGAATCTACGTGCCTATGACTTCGTTTC 237378 >seq4 Length=30051516 Score = 98.7 bits (108), Expect = 1e-15 Identities = 124/169 (73%), Gaps = 6/169 (4%) Strand=Plus/Plus Query 151654 TGGTGTCAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATGGA 151713 |||| | ||||||||||| |||||||| || |||||||| |||||||| ||| | | || Sbjct 1282761 TGGTATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGA 1282820 Query 151714 TGGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGT-- 151771 ||||||| ||| | || || ||| || | | || ||||| ||| ||| Sbjct 1282821 CAGTCAGGGTCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTAT 1282878 Query 151772 --ATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCT 151818 |||||||| || || || ||||||||||| ||||||||| | ||||| Sbjct 1282879 GGATGGAAGTAATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927 >seq1024 Length=717246 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 151733 AACACCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGT 151792 ||||| ||||| || | | |||||||| || ||||||||||| ||||| || ||| Sbjct 156788 AACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGT 156847 Query 151793 AATGCTCACAACTTCCCTCTCGACCT 151818 |||||||||||||||||||| ||||| Sbjct 156848 AATGCTCACAACTTCCCTCTAGACCT 156873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549572528637480