Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_021536.1
Length=171797
Score E
Sequences producing significant alignments: (Bits) Value
seq9 141 1e-28
seq1382 136 4e-27
seq1035 113 5e-20
seq4 98.7 1e-15
seq1024 84.2 2e-11
>seq9
Length=34148863
Score = 141 bits (156), Expect = 1e-28
Identities = 182/246 (74%), Gaps = 4/246 (2%)
Strand=Plus/Plus
Query 151165 TTACATGGGTCGTGAGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGC-G 151223
|||||| | || ||||| ||||| || | ||||||||||||| ||||| ||| |
Sbjct 1506916 TTACATTGATCATGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGAT-TGCTG 1506974
Query 151224 TTGCATACTCTGCTCCAGTTGCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTC 151283
||||||| || ||||| ||||| ||||| | ||| || ||| | |||| ||| | ||||
Sbjct 1506975 TTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTC 1507034
Query 151284 AAGGTTCTTTCTCTGATGCAATGCCCCTGGGTATTTCTGGCACATTCAACTACATG-CTT 151342
|||| ||||||||||| ||||| | || || ||| ||| ||||||| |||| ||
Sbjct 1507035 AAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTATT 1507093
Query 151343 GTCTTCCAAGCAGAGCACAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTGGT 151402
|| || | ||||| |||||||| || ||||| | | || ||| | ||||| |||||
Sbjct 1507094 GTATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGT 1507153
Query 151403 GTCTTC 151408
|| |||
Sbjct 1507154 GTATTC 1507159
>seq1382
Length=172696
Score = 136 bits (150), Expect = 4e-27
Identities = 239/342 (70%), Gaps = 17/342 (5%)
Strand=Plus/Plus
Query 151358 CACAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCT--GGTGTCTTCGGTGGAT 151415
|||||||| || ||||| || || | ||| | ||| | ||| ||||| ||||| || |
Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556
Query 151416 CGCTCTTCTCGGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCG 151475
| || ||| || ||||| ||||| |||| || ||| || | | || ||||| |
Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616
Query 151476 AAAACGAGTCC-CAGAACTATGGTTACAAGTTCGGTCAAGAAGAAG----AGACCTACAA 151530
||||||| || || | | ||||||| |||||||||||||||| |||| |||||
Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675
Query 151531 CA-----TCGTTGCCGCACACGGTTACTTTGGTCGTCTCATCTTCCAATACGCTTCCTTC 151585
| | || || || || ||||| || | || | ||| ||||||| ||| |||
Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735
Query 151586 AACAATTCCCGTTCG--CTGCACTTC--TTCCTCGCAGCATGGCCTGTTGTCGGTATCTG 151641
||||| || || | || || | ||| | ||||| ||||| ||| | ||||||||
Sbjct 123736 AACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCTG 123795
Query 151642 GTTCACTGCACTTGGTGTCAGCACCATGGCATTCAACCTGAA 151683
| |||| || | ||| | ||||||||||| |||||||| ||
Sbjct 123796 GGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837
>seq1035
Length=594915
Score = 113 bits (124), Expect = 5e-20
Identities = 265/397 (67%), Gaps = 26/397 (7%)
Strand=Plus/Plus
Query 152832 TTTCGGGGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGAC 152891
||| || || ||||| || || |||| | |||| | ||| | | | || |||||
Sbjct 236995 TTTTGGTGTAGCAGCTATATTTCGATGAATCCTCTGATTCCAACGGTGGAATAATTGGAC 237054
Query 152892 ATTGAATCCGTTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGC 152951
||||| || || |||||||||| ||| ||| | || || | || |||| | ||
Sbjct 237055 GTTGAACCCTTTGAATATGATGGGAGTTT-AGGAGTATTAGGCGCTGCTCTGCTATGCGC 237113
Query 152952 CATTCATGGTGTTACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACTTT 153011
||||||||| | ||| | || ||||| | |||||||| | ||||| || |
Sbjct 237114 TATTCATGGTCT----GTATAAAACACTTTATTCGAAGATGGTAACGGTGCAAATACATA 237169
Query 153012 CAAA----GCTTTCGACAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACC 153067
| ||||| || ||||||| |||||||| ||||| ||||| ||||||||||
Sbjct 237170 CTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTAACC 237229
Query 153068 GTTTCTGGTCCCAGAT-----ATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTT 153122
|||| |||||||| || || || |||||||| |||||| || |||
Sbjct 237230 GTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGG-------- 237281
Query 153123 CTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGG---AATCA-TTG 153178
| ||||| | |||||| | || | ||| | |||| | ||||||| | | | | |
Sbjct 237282 CCTTATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGGTAGTAAGTCG 237341
Query 153179 GTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATC 153215
|||| ||||| ||||| ||||| || || || || ||
Sbjct 237342 GTCTGGCTCTGAATCTACGTGCCTATGACTTCGTTTC 237378
>seq4
Length=30051516
Score = 98.7 bits (108), Expect = 1e-15
Identities = 124/169 (73%), Gaps = 6/169 (4%)
Strand=Plus/Plus
Query 151654 TGGTGTCAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATGGA 151713
|||| | ||||||||||| |||||||| || |||||||| |||||||| ||| | | ||
Sbjct 1282761 TGGTATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGA 1282820
Query 151714 TGGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGT-- 151771
||||||| ||| | || || ||| || | | || ||||| ||| |||
Sbjct 1282821 CAGTCAGGGTCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTAT 1282878
Query 151772 --ATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCT 151818
|||||||| || || || ||||||||||| ||||||||| | |||||
Sbjct 1282879 GGATGGAAGTAATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927
>seq1024
Length=717246
Score = 84.2 bits (92), Expect = 2e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 151733 AACACCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGT 151792
||||| ||||| || | | |||||||| || ||||||||||| ||||| || |||
Sbjct 156788 AACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGT 156847
Query 151793 AATGCTCACAACTTCCCTCTCGACCT 151818
|||||||||||||||||||| |||||
Sbjct 156848 AATGCTCACAACTTCCCTCTAGACCT 156873
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 549572528637480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |