Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_021559.1
Length=179063
Score E
Sequences producing significant alignments: (Bits) Value
seq1063 123 3e-23
seq10 114 1e-20
seq9 98.7 1e-15
seq1382 89.7 6e-13
>seq1063
Length=431445
Score = 123 bits (136), Expect = 3e-23
Identities = 233/336 (69%), Gaps = 29/336 (9%)
Strand=Plus/Minus
Query 72694 GATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAA 72753
||||||||||| | || || || ||||| ||| |||||||| | || || | ||||||
Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166
Query 72754 CACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCA--GGTATGTTCGGTGGTA 72811
|||||||| || ||||| | || || ||| ||||||||| ||| | |||||
Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 54111
Query 72812 GTCTCTTCAGTGCAATGCACGGTTCACTTGTTACT-TCATCTCTAATCAGAGAGACAACA 72870
| || ||| | ||||| ||||| |||| | | || | | | ||||| || | ||
Sbjct 54110 --CCCT--AGTACTATGCATGGTTC-CTTGGTCCACTCTTGTTTCATCAGGGAAATCACT 54056
Query 72871 GAGAACGA----GAGTCAA-AACTACGGCTATAAGTTCGGACAAGAAGAAGAAAC----- 72920
|| ||||| | || | || | | || ||||| |||| ||||| ||
Sbjct 54055 GAAAACGAATCCGCGTTAGCAAGT--GACTGA---TTCGGTAAAGAGGAAGAGACTTTAC 54001
Query 72921 -ATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCAT 72979
||| | ||||| ||||||||||| || || | |||| |||||||| ||||| |
Sbjct 54000 AATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTT 53941
Query 72980 TCAACAACTCTCGTTCATTACACTTCTTCCTCGCTG 73015
|||||||||||||||| ||||| |||||| | ||||
Sbjct 53940 TCAACAACTCTCGTTCTTTACATTTCTTCTTGGCTG 53905
>seq10
Length=33665772
Score = 114 bits (126), Expect = 1e-20
Identities = 229/335 (68%), Gaps = 27/335 (8%)
Strand=Plus/Plus
Query 72694 GATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAA 72753
||||||||||| |||| || || ||||| |||||||||||| | || ||||| ||||||
Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954
Query 72754 CACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAG--CAGGTATGTTCGGTGGTA 72811
|||||||| || ||||| | || || ||| |||||||| | ||| | |||||
Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 4333009
Query 72812 GTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTCTAATCAGAGAGACAACAG 72871
| || ||| | ||||| ||||| | || | || | | | ||||| || | || |
Sbjct 4333010 --CCCT--AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065
Query 72872 AGAACGA----GAGTCA-AAACTACGGCTATAAGTTCGGACAAGAAGAAGAAAC------ 72920
| ||||| | || | || | | || ||||| |||| ||||| ||
Sbjct 4333066 AAAACGAATCCGCGTTAGCAAGT--GACT---GATTCGGTAAAGAGGAAGAGACTTTACA 4333120
Query 72921 ATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATT 72980
||| | |||||| | ||||||||| || || | |||| | || ||| ||||| ||
Sbjct 4333121 ATAGAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTT 4333180
Query 72981 CAACAACTCTCGTTCATTACACTTCTTCCTCGCTG 73015
||||||||| ||| | ||| |||||| | ||||
Sbjct 4333181 CAACAACTCGACTTCTTGACATTTCTTCTTGGCTG 4333215
>seq9
Length=34148863
Score = 98.7 bits (108), Expect = 1e-15
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 72595 CTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCA 72654
|| || ||| | |||||||| ||| ||||| ||||| ||||| | || || |||
Sbjct 1506950 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 1507009
Query 72655 GTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 72714
|| ||| | | || || | ||||| || ||||||||||||||||| |||| ||
Sbjct 1507010 GTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATA 1507069
Query 72715 TCAGGTACGTTCAACTTCATGT-TCGTGTTCCAAGCAGAACACAACATACTAATGCACCC 72773
|| | | ||||||||||||| | || || | |||||||||||||| || ||||| |
Sbjct 1507070 TCTAGCA-TTTCAACTTCATGTATTGTATTTCTGGCAGAACACAACATCCTTATGCATCT 1507128
Query 72774 CTTCCATATGGCAGGTGTAGCAGGTATGTTC 72804
| || ||| ||||||| | ||| | |||
Sbjct 1507129 GGTTCACATGTTAGGTGTAACTGGTGTATTC 1507159
>seq1382
Length=172696
Score = 89.7 bits (98), Expect = 6e-13
Identities = 174/253 (69%), Gaps = 13/253 (5%)
Strand=Plus/Plus
Query 72752 AACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCA--GGTATGTTCGGTGG 72809
|||||||||| || ||||| || || | ||| |||| |||| ||| | ||||| ||
Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554
Query 72810 TAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTCTAATCAGAGAGACAAC 72869
|| |||||||| ||||| ||||| | || || || | | ||||| || || ||
Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCAC 123614
Query 72870 AGAGAACGAGAGT-CAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATA-TAAC 72927
|| ||||| | || | | || || | ||||| |||||||||| || | | | ||
Sbjct 123615 TGAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTAC 123673
Query 72928 A--------TTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCAT 72979
| |||| ||||||||||| || || | |||| ||| |||| ||||| |
Sbjct 123674 AATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTT 123733
Query 72980 TCAACAACTCTCG 72992
|||||||||||||
Sbjct 123734 TCAACAACTCTCG 123746
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 572821618881720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |