Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq1063 123 3e-23 seq10 114 1e-20 seq9 98.7 1e-15 seq1382 89.7 6e-13 >seq1063 Length=431445 Score = 123 bits (136), Expect = 3e-23 Identities = 233/336 (69%), Gaps = 29/336 (9%) Strand=Plus/Minus Query 72694 GATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAA 72753 ||||||||||| | || || || ||||| ||| |||||||| | || || | |||||| Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166 Query 72754 CACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCA--GGTATGTTCGGTGGTA 72811 |||||||| || ||||| | || || ||| ||||||||| ||| | ||||| Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 54111 Query 72812 GTCTCTTCAGTGCAATGCACGGTTCACTTGTTACT-TCATCTCTAATCAGAGAGACAACA 72870 | || ||| | ||||| ||||| |||| | | || | | | ||||| || | || Sbjct 54110 --CCCT--AGTACTATGCATGGTTC-CTTGGTCCACTCTTGTTTCATCAGGGAAATCACT 54056 Query 72871 GAGAACGA----GAGTCAA-AACTACGGCTATAAGTTCGGACAAGAAGAAGAAAC----- 72920 || ||||| | || | || | | || ||||| |||| ||||| || Sbjct 54055 GAAAACGAATCCGCGTTAGCAAGT--GACTGA---TTCGGTAAAGAGGAAGAGACTTTAC 54001 Query 72921 -ATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCAT 72979 ||| | ||||| ||||||||||| || || | |||| |||||||| ||||| | Sbjct 54000 AATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTT 53941 Query 72980 TCAACAACTCTCGTTCATTACACTTCTTCCTCGCTG 73015 |||||||||||||||| ||||| |||||| | |||| Sbjct 53940 TCAACAACTCTCGTTCTTTACATTTCTTCTTGGCTG 53905 >seq10 Length=33665772 Score = 114 bits (126), Expect = 1e-20 Identities = 229/335 (68%), Gaps = 27/335 (8%) Strand=Plus/Plus Query 72694 GATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAA 72753 ||||||||||| |||| || || ||||| |||||||||||| | || ||||| |||||| Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954 Query 72754 CACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAG--CAGGTATGTTCGGTGGTA 72811 |||||||| || ||||| | || || ||| |||||||| | ||| | ||||| Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 4333009 Query 72812 GTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTCTAATCAGAGAGACAACAG 72871 | || ||| | ||||| ||||| | || | || | | | ||||| || | || | Sbjct 4333010 --CCCT--AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065 Query 72872 AGAACGA----GAGTCA-AAACTACGGCTATAAGTTCGGACAAGAAGAAGAAAC------ 72920 | ||||| | || | || | | || ||||| |||| ||||| || Sbjct 4333066 AAAACGAATCCGCGTTAGCAAGT--GACT---GATTCGGTAAAGAGGAAGAGACTTTACA 4333120 Query 72921 ATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATT 72980 ||| | |||||| | ||||||||| || || | |||| | || ||| ||||| || Sbjct 4333121 ATAGAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTT 4333180 Query 72981 CAACAACTCTCGTTCATTACACTTCTTCCTCGCTG 73015 ||||||||| ||| | ||| |||||| | |||| Sbjct 4333181 CAACAACTCGACTTCTTGACATTTCTTCTTGGCTG 4333215 >seq9 Length=34148863 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 72595 CTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCA 72654 || || ||| | |||||||| ||| ||||| ||||| ||||| | || || ||| Sbjct 1506950 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 1507009 Query 72655 GTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 72714 || ||| | | || || | ||||| || ||||||||||||||||| |||| || Sbjct 1507010 GTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATA 1507069 Query 72715 TCAGGTACGTTCAACTTCATGT-TCGTGTTCCAAGCAGAACACAACATACTAATGCACCC 72773 || | | ||||||||||||| | || || | |||||||||||||| || ||||| | Sbjct 1507070 TCTAGCA-TTTCAACTTCATGTATTGTATTTCTGGCAGAACACAACATCCTTATGCATCT 1507128 Query 72774 CTTCCATATGGCAGGTGTAGCAGGTATGTTC 72804 | || ||| ||||||| | ||| | ||| Sbjct 1507129 GGTTCACATGTTAGGTGTAACTGGTGTATTC 1507159 >seq1382 Length=172696 Score = 89.7 bits (98), Expect = 6e-13 Identities = 174/253 (69%), Gaps = 13/253 (5%) Strand=Plus/Plus Query 72752 AACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCA--GGTATGTTCGGTGG 72809 |||||||||| || ||||| || || | ||| |||| |||| ||| | ||||| || Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554 Query 72810 TAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTCTAATCAGAGAGACAAC 72869 || |||||||| ||||| ||||| | || || || | | ||||| || || || Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCAC 123614 Query 72870 AGAGAACGAGAGT-CAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATA-TAAC 72927 || ||||| | || | | || || | ||||| |||||||||| || | | | || Sbjct 123615 TGAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTAC 123673 Query 72928 A--------TTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCAT 72979 | |||| ||||||||||| || || | |||| ||| |||| ||||| | Sbjct 123674 AATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTT 123733 Query 72980 TCAACAACTCTCG 72992 ||||||||||||| Sbjct 123734 TCAACAACTCTCG 123746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572821618881720