Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq9 131 2e-25 seq4576 116 3e-21 seq8 111 1e-19 seq1007 95.1 1e-14 seq5 93.3 4e-14 seq11 91.5 1e-13 seq1 91.5 1e-13 seq3 86.0 6e-12 >seq9 Length=34148863 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| |||| ||||| || || || || ||||| | || || || | Sbjct 33549195 ATGCAGATCTTTGTTAAGACGCTCACAGGGAAGACCATTACCTTGGAGGTGGAGAGTTCG 33549136 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||| ||||| || || || || || ||||| Sbjct 33549135 GACACGATTGATAATGTCAAGGCAAAGATCCAGGACAAGGAGGGGATTCCACCGGATCAG 33549076 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| ||||| ||||||||||| | | | | || ||||||| ||| Sbjct 33549075 CAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAGGACGGGCGCACCCTGGCAGATTACAAC 33549016 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| |||||||| || || ||| ||||| | || | ||||| || Sbjct 33549015 ATTCAGAAGGAATCCACCCTTCACCTGGTGCTCCGCCTCCGCGGGGG 33548969 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| |||| || || ||||| || || ||||| | || || || | | Sbjct 33541209 ATGCAGATCTTTGTTAAGACCCTCACCGGGAAGACCATTACCTTGGAGGTGGAGAGCTCG 33541268 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || ||||| Sbjct 33541269 GACACGATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGGATTCCACCGGATCAG 33541328 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||| || ||||| ||||| ||||| | | | || ||||||| ||| Sbjct 33541329 CAGAGGCTCATCTTCGCTGGGAAGCAGCTAGAGGACGGCCGCACCCTGGCAGATTACAAC 33541388 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| |||||||| || || ||| ||||| | || | ||||| || Sbjct 33541389 ATTCAGAAGGAATCCACCCTTCACCTGGTGCTCCGCCTCCGCGGTGG 33541435 >seq4576 Length=2771 Score = 116 bits (128), Expect = 3e-21 Identities = 168/236 (71%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 24697 TGATAC-GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAG 24755 |||||| ||||||||||||| |||| ||||| || || ||||| || || ||||| || | Sbjct 2483 TGATACAGATGCAGATCTTTGTTAAGACGCTCACTGGAAAAACCATCACCCTCGAGGTCG 2542 Query 24756 AAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTC 24815 || | ||||||| | || | || ||| |||||||| |||||||| || || |||| Sbjct 2543 AAAGCTCCGACACCATCGACAACGTCAAAGCTAAGATCCAGGACAAAGAGGGCATCCCTC 2602 Query 24816 CCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAG 24875 |||| || ||| | | || || || || || ||||| |||||| | | | | | Sbjct 2603 CCGACCAGCAAAGGCTCATTTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTTGCGG 2662 Query 24876 ATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 | || ||||| || || || ||||| || ||| | || | || | ||||| ||| Sbjct 2663 ACTACAACATCCAGAAAGAGTCGACGCTCCACCTCGTCCTCCGTCTCCGCGGTGGC 2718 >seq8 Length=35439739 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || || ||||| || || | | Sbjct 1222514 ATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCG 1222455 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | || |||||| ||||| || || || ||||| || || Sbjct 1222454 GACACGATCGACAACGTTAAGGCCAA-GATCCAGGACAAGGAGGGCATCCCTCCGGACCA 1222396 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | | ||||||||||| || ||||| |||||| | | | || | || ||||| Sbjct 1222395 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTATAA 1222336 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||| ||||| || || || || ||||| || || | | ||||| Sbjct 1222335 CATTCAGAAGGAGTCCACCCTTCATCTGGTGCTGAGACTCAGGGGAGG 1222288 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || ||||| || || || || || || ||||| || ||| | | Sbjct 26901036 GATGCAGATCTTCGTGAAGACGCTGACGGGGAAGACGATCACCCTCGAGGTGGAATCGTC 26900977 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||| || ||||| || || || || || ||||| Sbjct 26900976 GGACACGATTGACAACGTGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCGGATCA 26900917 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | ||||| ||||| || |||||||||||| ||| | | | || || || Sbjct 26900916 GCAGCGTCTCATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGAACCCTCGCCGACTACAA 26900857 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||| ||||| || || || ||| | || | || | ||||| || Sbjct 26900856 CATTCAGAAGGAGTCCACGCTCCACCTCGTCCTCCGCCTCCGCGGCGG 26900809 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | ||||| || || || || || || || || || || ||| || | Sbjct 1223458 GATGCAGATCTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTAGAGGTTGAATCCTC 1223399 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||||||||| || || || || ||||| || Sbjct 1223398 CGACACCATCGACAATGTTAAGGCCAAGATCCAAGACAAGGAGGGGATCCCCCCCGACCA 1223339 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | | ||||| || || || ||||| || || | | | || | || ||||| Sbjct 1223338 GCAGAGGCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGCACCTTGGCCGACTATAA 1223279 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 |||||| ||||| || || || ||| | ||| Sbjct 1223278 CATTCAGAAGGAGTCCACCCTCCACCTCGTG 1223248 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || | | Sbjct 1222286 ATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCCTGGAGGTTGAGAGCTCT 1222227 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | ||||||||| ||||| || || || || || || || Sbjct 1222226 GACACGATCGACAACGTTAAGGC-AAAGATCCAGGACAAGGAGGGTATTCCACCGGACCA 1222168 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | | |||||||| || || ||||| ||||| | | | || | ||||| || Sbjct 1222167 GCAGAGGCTTATCTTTGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGGCCGATTACAA 1222108 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| || || || ||| ||||| | || | || || ||| Sbjct 1222107 TATTCAGAAGGAGTCCACTCTTCACCTGGTGCTCCGCCTCCGTGGTGGC 1222059 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || || || ||||| || || || | Sbjct 32122231 GATGCAGATCTTCGTGAAGACCCTTACGGGGAAGACAATCACCCTCGAGGTGGAGTCCTC 32122290 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| ||||| || || || || || Sbjct 32122291 GGACACGATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCGCCGGACCA 32122350 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | | ||||| |||||||| ||||| ||||| | | | | | || || || Sbjct 32122351 GCAGAGGCTCATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAA 32122410 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 ||| || ||||| || || || ||| | || | || | ||||| |||| Sbjct 32122411 CATCCAGAAGGAGTCCACCCTCCACCTCGTCCTCCGCCTCCGCGGCGGCG 32122460 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| || || || ||||| || ||||| | ||||||| ||||| || Sbjct 1222658 AAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAACAGAGGCTGATCTTCGCCGGCAAG 1222599 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||||| |||||| | | | || | || ||||||||||| ||||| || || || ||| Sbjct 1222598 CAGCTCGAGGATGGCCGCACCTTGGCCGACTATAACATTCAGAAGGAGTCCACCCTCCAC 1222539 Query 24908 TTGGTG 24913 | ||| Sbjct 1222538 CTCGTG 1222533 >seq1007 Length=1704909 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || ||||| || || ||||| ||||| || || | | Sbjct 32528 GATGCAGATCTTCGTGAAGACCCTCACCGGGAAGACGATTACCCTCGAGGTGGAGTCATC 32469 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | || || |||||||| ||||| ||||| || |||| || || Sbjct 32468 GGACGCCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCTCAGGACCA 32409 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | ||||| |||||||| ||||| ||||| | | | | | || || || Sbjct 32408 GCAGCGGCTCATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAA 32349 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 ||| || ||||| || || || ||| | || | || ||||||| |||| Sbjct 32348 CATCCAGAAGGAGTCCACCCTCCACCTCGTCCTCCGCCTGCGCGGCGGCG 32299 >seq5 Length=29377369 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| || ||| | ||||| || ||||| || || || || || || || || | | Sbjct 457755 GATGCAAATTTTTGTCAAAACCCTCACCGGAAACACCATCACCCTGGAGGTGGAGAGCTC 457814 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | | | | ||| ||||||||| ||||| || || || | || ||||| Sbjct 457815 AGACACGATCGCCAATCTTAAAGCAAAGATCCATGACAAGGAGGGCATCTCACCGGATCA 457874 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | | |||||||||||||||||||| |||||| | | || || || | Sbjct 457875 GCAGAGGCTCATCTTTGCCGGGAAACAGCTCGAGGATGGCCGCACTCTGGACGACTACAG 457934 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||||| |||||||| || || ||| |||| | ||| | || || ||| Sbjct 457935 CATTCAGAAGGAATCCACTCTTCACCTGGTTCTCCGACTCCGTGGTGGC 457983 >seq11 Length=25514024 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || ||||| ||||| || || || || |||||||| || | | Sbjct 16241642 GATGCAGATCTTTGTGAAGACGCTCACCGGGAAGACGATCACCCTCGAAGTCGAGAGCTC 16241583 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||| || ||||| ||||| || || || || || Sbjct 16241582 GGACACCATCGACAACGTGAAGGCCAAGATTCAGGACAAGGAAGGCATTCCACCGGACCA 16241523 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | | |||||||| || || ||||| ||||| | | | |||| || || Sbjct 16241522 GCAAAGGCTCATCTTTGCGGGCAAGCAGCTCGAGGACGGCCGTACTCTTGCAGACTACAA 16241463 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 ||| || ||||| || || || ||| Sbjct 16241462 CATCCAGAAGGAGTCCACTCTTCAC 16241438 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || || || || || || || || | | Sbjct 15140937 ATGCAGATCTTCGTGAAGACTTTGACGGGGAAGACGATCACCCTTGAGGTGGAGTCGTCG 15140878 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 15140877 GACACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 15140818 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| |||||||| ||||||||||| | | | | | || |||||| Sbjct 15140817 CAGCGCCTCATCTTCGCCGGGAAGCAGCTGGAGGACGGCCGCACCCTCGCCGACTATAAC 15140758 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 || || ||||| || || || ||| ||||| | || | ||||| |||| Sbjct 15140757 ATCCAGAAGGAGTCTACCCTCCACCTGGTGCTCCGCCTCCGCGGCGGCG 15140709 >seq1 Length=27573629 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || ||||| || || || || ||||| || || | | Sbjct 19376323 GATGCAGATCTTCGTGAAGACCCTCACCGGGAAGACGATCACCCTCGAGGTGGAGTCTTC 19376264 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 19376263 GGACACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGGATCCCGCCGGACCA 19376204 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | || ||||||||||| ||||| ||||| | | | | | |||| || || Sbjct 19376203 GCAGCGCCTCATATTTGCCGGGAAGCAGCTCGAGGACGGGCGCACCCTCGCAGACTACAA 19376144 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 ||| || ||||| || || || ||| Sbjct 19376143 CATCCAGAAGGAGTCCACCCTCCAC 19376119 >seq3 Length=30470407 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || || || ||||| || || | | Sbjct 5991202 GATGCAGATCTTCGTGAAGACTCTCACGGGGAAGACGATCACCCTCGAGGTGGAGTCGTC 5991143 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| || || || || || || || || || Sbjct 5991142 GGACACCATCGACAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCGCCTGACCA 5991083 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | |||||||||||||| ||||| |||||| | | | | | | || || || Sbjct 5991082 GCAGCGCCTCATCTTTGCCGGGAAGCAGCTCGAGGATGGGCGCACCCTCGCGGACTACAA 5991023 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 || || ||||| || || || ||| | || | || | ||||| |||| Sbjct 5991022 TATCCAGAAGGAGTCCACCCTCCACCTCGTCCTCCGCCTCCGCGGCGGCG 5990973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449856777416520