Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq9 84.2 2e-11 seq5 84.2 2e-11 >seq9 Length=34148863 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 110292 CTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGACGATACTGTCGGCCAGGTAA 110351 |||| ||||| || ||||| ||| | || |||| || || ||| | | |||| Sbjct 33549404 CTTTGACCGGGAAGACCATCACCCTTGAGGTGGAGAGCTCGGACACCATCGACAATGTAA 33549345 Query 110352 AACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGG 110411 | |||||| ||||| || || | ||| ||| || ||||| || || | ||| | Sbjct 33549344 AGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAGCAAAGGCTCATCTTTGCTG 33549285 Query 110412 GTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGT 110471 | || ||||| ||||||| | | || |||| |||||||||||||| || || ||||| Sbjct 33549284 GCAAGCAGCTTGAGGATGGCCGCACCCTGGCAGATTACAACATTCAGAAGGAGTCTACCC 33549225 Query 110472 TGCACATGGTGTTAAGACT 110490 | ||| | ||| | ||||| Sbjct 33549224 TTCACCTTGTGCTGAGACT 33549206 >seq5 Length=29377369 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG-CCTGA 110331 |||||||| ||||||||||| | ||||| || ||||| ||| | || |||| || | Sbjct 457756 ATGCAAATTTTTGTCAAAACCCTCACCGGAAACACCATCACCCTGGAGGTGGAGAGCTCA 457815 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || ||| | | | ||| ||||| ||||| || ||| | | |||||| Sbjct 457816 -GACACGATCGCCAATCTTAAAGCAAAGATCCATGACAAGGAGGGCATCTCACCGGATCA 457874 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || || || | ||| || |||||||| ||||||| | | || ||| || |||| Sbjct 457875 GCAGAGGCTCATCTTTGCCGGGAAACAGCTCGAGGATGGCCGCACTCTGGACGACTACAG 457934 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||| || ||||| || | ||| |||| | |||| || || || Sbjct 457935 CATTCAGAAGGAATCCACTCTTCACCTGGTTCTCCGACTCCGTGGTGG 457982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412805076290687