Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq9 84.2 2e-11
seq5 84.2 2e-11
>seq9
Length=34148863
Score = 84.2 bits (92), Expect = 2e-11
Identities = 138/199 (69%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 110292 CTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGACGATACTGTCGGCCAGGTAA 110351
|||| ||||| || ||||| ||| | || |||| || || ||| | | ||||
Sbjct 33549404 CTTTGACCGGGAAGACCATCACCCTTGAGGTGGAGAGCTCGGACACCATCGACAATGTAA 33549345
Query 110352 AACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGG 110411
| |||||| ||||| || || | ||| ||| || ||||| || || | ||| |
Sbjct 33549344 AGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAGCAAAGGCTCATCTTTGCTG 33549285
Query 110412 GTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGT 110471
| || ||||| ||||||| | | || |||| |||||||||||||| || || |||||
Sbjct 33549284 GCAAGCAGCTTGAGGATGGCCGCACCCTGGCAGATTACAACATTCAGAAGGAGTCTACCC 33549225
Query 110472 TGCACATGGTGTTAAGACT 110490
| ||| | ||| | |||||
Sbjct 33549224 TTCACCTTGTGCTGAGACT 33549206
>seq5
Length=29377369
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG-CCTGA 110331
|||||||| ||||||||||| | ||||| || ||||| ||| | || |||| || |
Sbjct 457756 ATGCAAATTTTTGTCAAAACCCTCACCGGAAACACCATCACCCTGGAGGTGGAGAGCTCA 457815
Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391
|| || ||| | | | ||| ||||| ||||| || ||| | | ||||||
Sbjct 457816 -GACACGATCGCCAATCTTAAAGCAAAGATCCATGACAAGGAGGGCATCTCACCGGATCA 457874
Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451
|| || || || | ||| || |||||||| ||||||| | | || ||| || ||||
Sbjct 457875 GCAGAGGCTCATCTTTGCCGGGAAACAGCTCGAGGATGGCCGCACTCTGGACGACTACAG 457934
Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
|||||| || ||||| || | ||| |||| | |||| || || ||
Sbjct 457935 CATTCAGAAGGAATCCACTCTTCACCTGGTTCTCCGACTCCGTGGTGG 457982
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412805076290687
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |