Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq10 152 4e-32 seq9 127 2e-24 seq8 122 7e-23 seq4576 111 1e-19 seq5 91.5 1e-13 seq4 82.4 6e-11 >seq10 Length=33665772 Score = 152 bits (168), Expect = 4e-32 Identities = 165/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||| || || ||||| || || || || || || ||||||| ||||||| | Sbjct 14516033 CGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGCAAGGGTGCGACCA 14516092 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | |||||| |||||| | || || |||||||| ||||| |||||||||||||| Sbjct 14516093 TCCTCTAATTGTTTCCCAGCAAAGATTAACCTTTGCTGGTCCGGTGGAATACCCTCTTTA 14516152 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| |||||| | ||| ||| | || | ||| || ||| ||| |||||||| || || Sbjct 14516153 TCTTG-AATTTTAGCTTTCACATTATCAATAGTATCGGAAGATTCAACTTCAAGGGTGAT 14516211 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | || |||| ||||| ||||| Sbjct 14516212 GGTCTTGCCGGTGAGAGTCTTAATGAATATTTGCAT 14516247 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 29656 ATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGT 29714 ||||| || || || || || || || ||||| |||||||| ||| || | || ||| | Sbjct 14516993 ATCAACCTCTGTTGGTCTGGGGGGATGCCCTCCTTGTCTTG-AATCTTGGCCTTTACATT 14517051 Query 29715 TTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAAC 29774 || | |||||||||| ||| || ||||| || || || ||||| |||| || ||||| Sbjct 14517052 ATCAATAGTGTCAGAAGATTCAACCTCAAGGGTGATGGTCTTGCCGGTTAGTGTCTTAAC 14517111 Query 29775 AAATATCTGCAT 29786 |||||||||||| Sbjct 14517112 AAATATCTGCAT 14517123 >seq9 Length=34148863 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||| ||||| |||||||| || |||||||| ||||| || | |||||| Sbjct 33548981 CGGAGCACCAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGCCCG 33549040 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || |||||| | |||| || ||||||||||| ||||| ||||| ||| Sbjct 33549041 TCCTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCCGGTGGAATCCCCTCCTTG 33549100 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||| |||||| | || | ||||| ||| || || || | || || Sbjct 33549101 TCCTGGATCTTTGCCTTGACATTATCAATCGTGTCCGAACTCTCCACCTCCAAGGTAATG 33549160 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | || |||||||| |||||||| Sbjct 33549161 GTCTTCCCTGTGAGCGTCTTAACAAAGATCTGCAT 33549195 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||| ||||| |||||||| || |||||||| ||||| || | |||||| Sbjct 33541423 CGGAGCACCAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGGCCG 33541364 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || ||||| | || | || ||||||||||| ||||| ||||| ||| Sbjct 33541363 TCCTCTAGCTGCTTCCCAGCGAAGATGAGCCTCTGCTGATCCGGTGGAATCCCCTCCTTG 33541304 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || ||||| | || | ||||| || || || || | || || Sbjct 33541303 TCCTGGATCTTCGCCTTGACGTTGTCGATCGTGTCCGAGCTCTCCACCTCCAAGGTAATG 33541244 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | ||| |||||||| |||||||| Sbjct 33541243 GTCTTCCCGGTGAGGGTCTTAACAAAGATCTGCAT 33541209 Score = 105 bits (116), Expect = 5e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | | |||||| | ||||| || || || || |||||||| ||||| || Sbjct 33549197 CCACCCCTAAGTCTCAGCACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCTGCC 33549256 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || ||||||||| | || | |||||||| ||||| ||| Sbjct 33549257 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATGAGCCTTTGCTGGTCCGGGGGA 33549316 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||||| ||||| || ||| || | || ||| | || | ||||| || || || Sbjct 33549317 ATACCCTCCTTGTCCTG-AATCTTGGCCTTTACATTGTCGATGGTGTCCGAGCTCTCCAC 33549375 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAA 29765 ||||| || || || || || || || Sbjct 33549376 CTCAAGGGTGATGGTCTTCCCGGTCAA 33549402 >seq8 Length=35439739 Score = 122 bits (134), Expect = 7e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||| ||||| ||||| || || ||||| || ||||| || | ||||||| Sbjct 1222072 CGGAGCACCAGGTGAAGAGTGGACTCCTTCTGAATATTGTAATCGGCCAGGGTGCGACCG 1222131 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || ||||||||| | || | || ||||| ||||| ||||||||||| ||| Sbjct 1222132 TCCTCGAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTG 1222191 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||| || || | || | |||||||| || || || || || || Sbjct 1222192 TCCTGGATCTTTGCCTTAACGTTGTCGATCGTGTCAGAGCTCTCAACCTCCAGGGTGATG 1222251 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| | ||| || || || |||||||| Sbjct 1222252 GTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 1222286 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | | |||||||| |||||| ||||| || || ||||||||||| || || Sbjct 1222288 CCTCCCCTGAGTCTCAGCACCAGATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGCC 1222347 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| ||||| || ||||| ||| | || | || ||||| ||||| || Sbjct 1222348 AAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGG 1222407 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || || || | || | ||||| || || || Sbjct 1222408 ATGCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATCGTGTCCGAGCTCTCGACC 1222467 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || | || || ||||| |||||||| Sbjct 1222468 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 1222514 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||| | || || ||||| || || ||||||||||| || || | |||||| Sbjct 1223243 CGGAGCACGAGGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGCCAAGGTGCGGCCG 1223302 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || || ||||| | || | || ||||| || || || || ||||| ||| Sbjct 1223303 TCTTCGAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTG 1223362 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || || ||| | || | ||||| || ||| || || || || || Sbjct 1223363 TCTTGGATCTTGGCCTTAACATTGTCGATGGTGTCGGAGGATTCAACCTCTAGGGTGATG 1223422 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| | |||||| || || |||||||| Sbjct 1223423 GTCTTGCCAGTGAGGGTTTTCACGAAGATCTGCAT 1223457 >seq4576 Length=2771 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | || ||||| || ||||| || ||||| || ||||||| || || Sbjct 2706 ACGGAGGACGAGGTGGAGCGTCGACTCTTTCTGGATGTTGTAGTCCGCAAGCGTACGGCC 2647 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||| || ||||| || | || | |||||||| || || || || |||||||| Sbjct 2646 ATCCTCGAGCTGCTTGCCCGCGAAAATGAGCCTTTGCTGGTCGGGAGGGATGCCCTCTTT 2587 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || |||||| | || | ||||| || ||| || || || || || Sbjct 2586 GTCCTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAGCTTTCGACCTCGAGGGTGAT 2527 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| ||||| | || |||||||| |||||||| Sbjct 2526 GGTTTTTCCAGTGAGCGTCTTAACAAAGATCTGCAT 2491 >seq5 Length=29377369 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||| ||||| |||||||| || |||||| | || || | | ||||| | Sbjct 457970 CGGAGAACCAGGTGAAGAGTGGATTCCTTCTGAATGCTGTAGTCGTCCAGAGTGCGGCCA 457911 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| ||||| || ||| | || | || ||||||||||| | || ||||| ||| Sbjct 457910 TCCTCGAGCTGTTTCCCGGCAAAGATGAGCCTCTGCTGATCCGGTGAGATGCCCTCCTTG 457851 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||| ||| | | | | | ||||| || || || || || || || Sbjct 457850 TCATGGATCTTTGCTTTAAGATTGGCGATCGTGTCTGAGCTCTCCACCTCCAGGGTGATG 457791 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | |||||| ||||| || ||||| Sbjct 457790 GTGTTTCCGGTGAGGGTTTTGACAAAAATTTGCAT 457756 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 ||||||||||| || ||||| || || ||| ||||| || | |||||| ||| || Sbjct 457733 ACCAAATGAAGGGTAGATTCCTTGTGGATGGAGTAATCGGCTAAGGTGCGGCCATCTTCC 457674 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | ||| ||||| ||| | || | |||||||| ||| || |||||||| |||||||| Sbjct 457673 AATTGCTTGCCGGCAAAGATGAGCCTTTGCTGGTCCACAGGGATACCCTCCTTGTCTTGC 457614 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | || || ||| | || | ||||| || || || || || || | |||||| Sbjct 457613 ATCTTAGCCTTCACATTCTCGATGGTGTCCGAGCTCTCGACCTCGAGGGTGGTGGTTTTG 457554 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || | ||| || | || || ||||| Sbjct 457553 CCGGTAAGGGTCTTGATGAAGATTTGCAT 457525 >seq4 Length=30051516 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 ||| |||| |||||| || || ||||| || ||||| || || |||| || | ||| Sbjct 3354417 CAGAACCAGATGAAGTGTCGACTCTTTCTGGATGTTGTAGTCTGCAAGAGTTCTGCCATC 3354358 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || | ||| || |||||| | |||||||| ||||||||||| | || ||||| ||||| Sbjct 3354357 TTCCAATTGCTTCCCAGCAAAAATCAATCTCTGCTGATCCGGGGCTATTCCCTCCTTGTC 3354298 Query 29694 TTG 29696 || Sbjct 3354297 CTG 3354295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385185120018519