Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq10 152 4e-32
seq9 127 2e-24
seq8 122 7e-23
seq4576 111 1e-19
seq5 91.5 1e-13
seq4 82.4 6e-11
>seq10
Length=33665772
Score = 152 bits (168), Expect = 4e-32
Identities = 165/216 (76%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| ||||||| || || ||||| || || || || || || ||||||| ||||||| |
Sbjct 14516033 CGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGCAAGGGTGCGACCA 14516092
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| || | |||||| |||||| | || || |||||||| ||||| ||||||||||||||
Sbjct 14516093 TCCTCTAATTGTTTCCCAGCAAAGATTAACCTTTGCTGGTCCGGTGGAATACCCTCTTTA 14516152
Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
||||| |||||| | ||| ||| | || | ||| || ||| ||| |||||||| || ||
Sbjct 14516153 TCTTG-AATTTTAGCTTTCACATTATCAATAGTATCGGAAGATTCAACTTCAAGGGTGAT 14516211
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| ||||| || | || |||| ||||| |||||
Sbjct 14516212 GGTCTTGCCGGTGAGAGTCTTAATGAATATTTGCAT 14516247
Score = 91.5 bits (100), Expect = 1e-13
Identities = 101/132 (77%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 29656 ATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGT 29714
||||| || || || || || || || ||||| |||||||| ||| || | || ||| |
Sbjct 14516993 ATCAACCTCTGTTGGTCTGGGGGGATGCCCTCCTTGTCTTG-AATCTTGGCCTTTACATT 14517051
Query 29715 TTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAAC 29774
|| | |||||||||| ||| || ||||| || || || ||||| |||| || |||||
Sbjct 14517052 ATCAATAGTGTCAGAAGATTCAACCTCAAGGGTGATGGTCTTGCCGGTTAGTGTCTTAAC 14517111
Query 29775 AAATATCTGCAT 29786
||||||||||||
Sbjct 14517112 AAATATCTGCAT 14517123
>seq9
Length=34148863
Score = 127 bits (140), Expect = 2e-24
Identities = 157/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| ||||||| ||||| |||||||| || |||||||| ||||| || | ||||||
Sbjct 33548981 CGGAGCACCAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGCCCG 33549040
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| || || || || |||||| | |||| || ||||||||||| ||||| ||||| |||
Sbjct 33549041 TCCTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCCGGTGGAATCCCCTCCTTG 33549100
Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
|| || | ||| |||||| | || | ||||| ||| || || || | || ||
Sbjct 33549101 TCCTGGATCTTTGCCTTGACATTATCAATCGTGTCCGAACTCTCCACCTCCAAGGTAATG 33549160
Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || || | || |||||||| ||||||||
Sbjct 33549161 GTCTTCCCTGTGAGCGTCTTAACAAAGATCTGCAT 33549195
Score = 109 bits (120), Expect = 4e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| ||||||| ||||| |||||||| || |||||||| ||||| || | ||||||
Sbjct 33541423 CGGAGCACCAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGGCCG 33541364
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| || || || || ||||| | || | || ||||||||||| ||||| ||||| |||
Sbjct 33541363 TCCTCTAGCTGCTTCCCAGCGAAGATGAGCCTCTGCTGATCCGGTGGAATCCCCTCCTTG 33541304
Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
|| || | || ||||| | || | ||||| || || || || | || ||
Sbjct 33541303 TCCTGGATCTTCGCCTTGACGTTGTCGATCGTGTCCGAGCTCTCCACCTCCAAGGTAATG 33541244
Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || || | ||| |||||||| ||||||||
Sbjct 33541243 GTCTTCCCGGTGAGGGTCTTAACAAAGATCTGCAT 33541209
Score = 105 bits (116), Expect = 5e-18
Identities = 149/207 (72%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| ||||| | | |||||| | ||||| || || || || |||||||| ||||| ||
Sbjct 33549197 CCACCCCTAAGTCTCAGCACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCTGCC 33549256
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| |||||| ||| || || || ||||||||| | || | |||||||| ||||| |||
Sbjct 33549257 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATGAGCCTTTGCTGGTCCGGGGGA 33549316
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
|||||||| ||||| || ||| || | || ||| | || | ||||| || || ||
Sbjct 33549317 ATACCCTCCTTGTCCTG-AATCTTGGCCTTTACATTGTCGATGGTGTCCGAGCTCTCCAC 33549375
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAA 29765
||||| || || || || || || ||
Sbjct 33549376 CTCAAGGGTGATGGTCTTCCCGGTCAA 33549402
>seq8
Length=35439739
Score = 122 bits (134), Expect = 7e-23
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| ||||||| ||||| ||||| || || ||||| || ||||| || | |||||||
Sbjct 1222072 CGGAGCACCAGGTGAAGAGTGGACTCCTTCTGAATATTGTAATCGGCCAGGGTGCGACCG 1222131
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| ||||| || ||||||||| | || | || ||||| ||||| ||||||||||| |||
Sbjct 1222132 TCCTCGAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTG 1222191
Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
|| || | ||| || || | || | |||||||| || || || || || ||
Sbjct 1222192 TCCTGGATCTTTGCCTTAACGTTGTCGATCGTGTCAGAGCTCTCAACCTCCAGGGTGATG 1222251
Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || ||||| | ||| || || || ||||||||
Sbjct 1222252 GTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 1222286
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|||||||| | | |||||||| |||||| ||||| || || ||||||||||| || ||
Sbjct 1222288 CCTCCCCTGAGTCTCAGCACCAGATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGCC 1222347
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| |||||| ||| ||||| || ||||| ||| | || | || ||||| ||||| ||
Sbjct 1222348 AAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGG 1222407
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| ||||| ||||| || | || || || | || | ||||| || || ||
Sbjct 1222408 ATGCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATCGTGTCCGAGCTCTCGACC 1222467
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || || || ||||| || | || || ||||| ||||||||
Sbjct 1222468 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 1222514
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| ||||| | || || ||||| || || ||||||||||| || || | ||||||
Sbjct 1223243 CGGAGCACGAGGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGCCAAGGTGCGGCCG 1223302
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| ||||| || || ||||| | || | || ||||| || || || || ||||| |||
Sbjct 1223303 TCTTCGAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTG 1223362
Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
||||| | || || ||| | || | ||||| || ||| || || || || ||
Sbjct 1223363 TCTTGGATCTTGGCCTTAACATTGTCGATGGTGTCGGAGGATTCAACCTCTAGGGTGATG 1223422
Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| |||||||| | |||||| || || ||||||||
Sbjct 1223423 GTCTTGCCAGTGAGGGTTTTCACGAAGATCTGCAT 1223457
>seq4576
Length=2771
Score = 111 bits (122), Expect = 1e-19
Identities = 154/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || || | || ||||| || ||||| || ||||| || ||||||| || ||
Sbjct 2706 ACGGAGGACGAGGTGGAGCGTCGACTCTTTCTGGATGTTGTAGTCCGCAAGCGTACGGCC 2647
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| ||||| || ||||| || | || | |||||||| || || || || ||||||||
Sbjct 2646 ATCCTCGAGCTGCTTGCCCGCGAAAATGAGCCTTTGCTGGTCGGGAGGGATGCCCTCTTT 2587
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
||| || | || |||||| | || | ||||| || ||| || || || || ||
Sbjct 2586 GTCCTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAGCTTTCGACCTCGAGGGTGAT 2527
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||||| ||||| | || |||||||| ||||||||
Sbjct 2526 GGTTTTTCCAGTGAGCGTCTTAACAAAGATCTGCAT 2491
>seq5
Length=29377369
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| || |||| ||||| |||||||| || |||||| | || || | | ||||| |
Sbjct 457970 CGGAGAACCAGGTGAAGAGTGGATTCCTTCTGAATGCTGTAGTCGTCCAGAGTGCGGCCA 457911
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| ||||| ||||| || ||| | || | || ||||||||||| | || ||||| |||
Sbjct 457910 TCCTCGAGCTGTTTCCCGGCAAAGATGAGCCTCTGCTGATCCGGTGAGATGCCCTCCTTG 457851
Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
|| || | ||| ||| | | | | | ||||| || || || || || || ||
Sbjct 457850 TCATGGATCTTTGCTTTAAGATTGGCGATCGTGTCTGAGCTCTCCACCTCCAGGGTGATG 457791
Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || || | |||||| ||||| || |||||
Sbjct 457790 GTGTTTCCGGTGAGGGTTTTGACAAAAATTTGCAT 457756
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637
||||||||||| || ||||| || || ||| ||||| || | |||||| ||| ||
Sbjct 457733 ACCAAATGAAGGGTAGATTCCTTGTGGATGGAGTAATCGGCTAAGGTGCGGCCATCTTCC 457674
Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697
| ||| ||||| ||| | || | |||||||| ||| || |||||||| ||||||||
Sbjct 457673 AATTGCTTGCCGGCAAAGATGAGCCTTTGCTGGTCCACAGGGATACCCTCCTTGTCTTGC 457614
Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757
| || || ||| | || | ||||| || || || || || || | ||||||
Sbjct 457613 ATCTTAGCCTTCACATTCTCGATGGTGTCCGAGCTCTCGACCTCGAGGGTGGTGGTTTTG 457554
Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || | ||| || | || || |||||
Sbjct 457553 CCGGTAAGGGTCTTGATGAAGATTTGCAT 457525
>seq4
Length=30051516
Score = 82.4 bits (90), Expect = 6e-11
Identities = 92/123 (75%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
||| |||| |||||| || || ||||| || ||||| || || |||| || | |||
Sbjct 3354417 CAGAACCAGATGAAGTGTCGACTCTTTCTGGATGTTGTAGTCTGCAAGAGTTCTGCCATC 3354358
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| | ||| || |||||| | |||||||| ||||||||||| | || ||||| |||||
Sbjct 3354357 TTCCAATTGCTTCCCAGCAAAAATCAATCTCTGCTGATCCGGGGCTATTCCCTCCTTGTC 3354298
Query 29694 TTG 29696
||
Sbjct 3354297 CTG 3354295
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385185120018519
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