Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq1382 127 2e-24 seq1035 118 1e-21 seq4 114 1e-20 seq1042 96.9 4e-15 seq10 96.9 4e-15 seq1063 93.3 5e-14 seq1024 84.2 2e-11 >seq1382 Length=172696 Score = 127 bits (140), Expect = 2e-24 Identities = 239/343 (70%), Gaps = 19/343 (6%) Strand=Plus/Plus Query 157570 CACAATATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCT--GGGGTATTCGGTGGAT 157627 ||||| || ||||||||||| || ||||| | || | ||| || |||||||| || | Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556 Query 157628 CTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACT 157686 | | ||| ||||||||| || | || || || | | ||| || | ||||| ||| Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACT 123615 Query 157687 GAAACAGAGTCA-CAGAACTATGGTTACAAGTTCGGTCAAGAAGAAG----AGACGTACA 157741 |||| || || || | | ||||||| |||||||||||||||| |||| |||| Sbjct 123616 GAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACA 123674 Query 157742 ACA-----TCGTTGCTGCACACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCATT 157796 | | | || ||||| || ||||| || | || ||||| ||||||| ||| || Sbjct 123675 ATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTT 123734 Query 157797 CAACAACAGCAG--AAGTCTTCACTTC--TTCCTCGCCGCATGGCCTGTTGTCGGCATCT 157852 ||||||| | | |||| || | ||| | || || ||||| ||| | || |||| Sbjct 123735 CAACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCT 123794 Query 157853 GGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAA 157895 || |||| || | || | ||||||||||| ||||||||||| Sbjct 123795 GGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 >seq1035 Length=594915 Score = 118 bits (130), Expect = 1e-21 Identities = 265/394 (67%), Gaps = 28/394 (7%) Strand=Plus/Plus Query 159249 TTTGGGGTGGCCGCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGACA 159308 ||||| || || || ||||| | | | |||| | ||| ||| | |||||||| Sbjct 236996 TTTGGTGTAGCAGCTATATTTCGATGAATCCTCTGATTCCAACGGTGGAATAATTGGACG 237055 Query 159309 CTAAACCCCTTCCATATGATGGGAGTTGCTG-GTATCCTAGGTGGAGCACTTCTATCTGC 159367 | ||||| || |||||||||||||| | |||| |||| | || || |||| || Sbjct 237056 TTGAACCCTTTGAATATGATGGGAGTTTAGGAGTAT--TAGGCGCTGCTCTGCTATGCGC 237113 Query 159368 TATTCATGGGGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCT- 159426 ||||||||| | || |||| || |||| ||| ||||| | ||||| || | Sbjct 237114 TATTCATGGTCT----GTATAAAACACTTTATTCGAAGATGGTAACGGTGCAAATACATA 237169 Query 159427 ---TTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTATTCTATGGTCACTGCAAACC 159483 || || ||| | ||||||||| || ||||||||||| ||||||||||| |||| Sbjct 237170 CTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTAACC 237229 Query 159484 GCTTCTGGTCGCAGATC-----TTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTT 159538 | || ||||| || ||| || || |||| ||||| || || || ||| Sbjct 237230 GTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGG-------- 237281 Query 159539 CTTTATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCAGTATT--GGCATTA--TTG 159594 | ||||||| ||||| | || | ||| |||||| |||| || | || | | Sbjct 237282 CCTTATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGGTAGTAAGTCG 237341 Query 159595 GTCTTGCTCTCAATCTTCGTGCTTACGATTTCGT 159628 |||| ||||| ||||| ||||| || || ||||| Sbjct 237342 GTCTGGCTCTGAATCTACGTGCCTATGACTTCGT 237375 >seq4 Length=30051516 Score = 114 bits (126), Expect = 1e-20 Identities = 118/153 (77%), Gaps = 6/153 (4%) Strand=Plus/Plus Query 157873 AGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAG 157932 ||||||||||| |||||||| || |||||||| |||||||| ||| | |||| ||||| Sbjct 1282768 AGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTCAG 1282827 Query 157933 GGTCGTGTGTTGAACACCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGT----ATGGA 157988 |||||||| | || || ||| ||| || | || || ||| ||||||| ||||| Sbjct 1282828 GGTCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATGGA 1282885 Query 157989 AGTTATGCATGAGCGTAACGCACACAACTTCCC 158021 ||| || ||||| ||||| || || |||||||| Sbjct 1282886 AGTAATACATGAACGTAATGCTCATAACTTCCC 1282918 >seq1042 Length=564079 Score = 96.9 bits (106), Expect = 4e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 157492 GGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATG 157551 |||||||| | | || |||| |||||||| || |||||||||||||| ||| ||| Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801 Query 157552 CTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCT 157611 | || |||||||| |||||||| || |||||||| || || ||||| | || ||||| Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCT 550741 Query 157612 GGG 157614 ||| Sbjct 550740 GGG 550738 >seq10 Length=33665772 Score = 96.9 bits (106), Expect = 4e-15 Identities = 91/115 (79%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 157510 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAG 157569 |||| ||||||| | || || ||||||||||| |||| ||| | || ||||||||||| Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954 Query 157570 CACAATATTCTTATGCATCCGTTCCACATGCTCGGCGTTG--CTGGGGTATTCGG 157622 ||||| || |||||||||| || |||||| | || || | |||| |||||||| Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG 4333009 >seq1063 Length=431445 Score = 93.3 bits (102), Expect = 5e-14 Identities = 232/346 (67%), Gaps = 31/346 (9%) Strand=Plus/Minus Query 157510 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAG 157569 |||| ||||||| |||| || ||||||||||| ||| ||| | || || | |||||| Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166 Query 157570 CACAATATTCTTATGCATCCGTTCCACATGCTCGGCGTTG--CTGGGGTATTCGGTGGAT 157627 ||||| || |||||||||| || |||||| | || || | |||| |||||||| Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----C 54110 Query 157628 CTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTT-----CGTGAAAC 157682 | | | | ||||||| || || || ||| | |||||| | |||| Sbjct 54109 CCTAG-----TACTATGCATGG----TTCCTT-GGTCCACTCTTGTTTCATCAGGGAAAT 54060 Query 157683 AACTGAAACAGAGTCACAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGAC-GTA 157739 ||||||| || || | | | | || || |||||| |||| |||||||| || Sbjct 54059 CACTGAAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTA 54002 Query 157740 CAA-----CATCGTTGCTGCACACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCA 157794 ||| || || ||||| || ||||| || | || ||||||||||||| ||| Sbjct 54001 CAATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGT 53942 Query 157795 TTCAACAACAGCAGAAGTCTTCACTTCTTCCTCGCCGCATGGCCTG 157840 ||||||||| | | | || |||||| | || || ||||||| Sbjct 53941 TTCAACAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896 >seq1024 Length=717246 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 157945 AACACCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGT 158004 ||||| ||||| ||| || | ||||| ||| |||||||||||||| |||||||| ||| Sbjct 156788 AACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGT 156847 Query 158005 AACGCACACAACTTCCCACTGGATCT 158030 || || ||||||||||| || || || Sbjct 156848 AATGCTCACAACTTCCCTCTAGACCT 156873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545224123236720