Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_023584.1
Length=170438
Score E
Sequences producing significant alignments: (Bits) Value
seq1382 127 2e-24
seq1035 118 1e-21
seq4 114 1e-20
seq1042 96.9 4e-15
seq10 96.9 4e-15
seq1063 93.3 5e-14
seq1024 84.2 2e-11
>seq1382
Length=172696
Score = 127 bits (140), Expect = 2e-24
Identities = 239/343 (70%), Gaps = 19/343 (6%)
Strand=Plus/Plus
Query 157570 CACAATATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCT--GGGGTATTCGGTGGAT 157627
||||| || ||||||||||| || ||||| | || | ||| || |||||||| || |
Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556
Query 157628 CTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACT 157686
| | ||| ||||||||| || | || || || | | ||| || | ||||| |||
Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACT 123615
Query 157687 GAAACAGAGTCA-CAGAACTATGGTTACAAGTTCGGTCAAGAAGAAG----AGACGTACA 157741
|||| || || || | | ||||||| |||||||||||||||| |||| ||||
Sbjct 123616 GAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACA 123674
Query 157742 ACA-----TCGTTGCTGCACACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCATT 157796
| | | || ||||| || ||||| || | || ||||| ||||||| ||| ||
Sbjct 123675 ATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTT 123734
Query 157797 CAACAACAGCAG--AAGTCTTCACTTC--TTCCTCGCCGCATGGCCTGTTGTCGGCATCT 157852
||||||| | | |||| || | ||| | || || ||||| ||| | || ||||
Sbjct 123735 CAACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCT 123794
Query 157853 GGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAA 157895
|| |||| || | || | ||||||||||| |||||||||||
Sbjct 123795 GGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837
>seq1035
Length=594915
Score = 118 bits (130), Expect = 1e-21
Identities = 265/394 (67%), Gaps = 28/394 (7%)
Strand=Plus/Plus
Query 159249 TTTGGGGTGGCCGCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGACA 159308
||||| || || || ||||| | | | |||| | ||| ||| | ||||||||
Sbjct 236996 TTTGGTGTAGCAGCTATATTTCGATGAATCCTCTGATTCCAACGGTGGAATAATTGGACG 237055
Query 159309 CTAAACCCCTTCCATATGATGGGAGTTGCTG-GTATCCTAGGTGGAGCACTTCTATCTGC 159367
| ||||| || |||||||||||||| | |||| |||| | || || |||| ||
Sbjct 237056 TTGAACCCTTTGAATATGATGGGAGTTTAGGAGTAT--TAGGCGCTGCTCTGCTATGCGC 237113
Query 159368 TATTCATGGGGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCT- 159426
||||||||| | || |||| || |||| ||| ||||| | ||||| || |
Sbjct 237114 TATTCATGGTCT----GTATAAAACACTTTATTCGAAGATGGTAACGGTGCAAATACATA 237169
Query 159427 ---TTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTATTCTATGGTCACTGCAAACC 159483
|| || ||| | ||||||||| || ||||||||||| ||||||||||| ||||
Sbjct 237170 CTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTAACC 237229
Query 159484 GCTTCTGGTCGCAGATC-----TTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTT 159538
| || ||||| || ||| || || |||| ||||| || || || |||
Sbjct 237230 GTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGG-------- 237281
Query 159539 CTTTATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCAGTATT--GGCATTA--TTG 159594
| ||||||| ||||| | || | ||| |||||| |||| || | || | |
Sbjct 237282 CCTTATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGGTAGTAAGTCG 237341
Query 159595 GTCTTGCTCTCAATCTTCGTGCTTACGATTTCGT 159628
|||| ||||| ||||| ||||| || || |||||
Sbjct 237342 GTCTGGCTCTGAATCTACGTGCCTATGACTTCGT 237375
>seq4
Length=30051516
Score = 114 bits (126), Expect = 1e-20
Identities = 118/153 (77%), Gaps = 6/153 (4%)
Strand=Plus/Plus
Query 157873 AGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAG 157932
||||||||||| |||||||| || |||||||| |||||||| ||| | |||| |||||
Sbjct 1282768 AGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTCAG 1282827
Query 157933 GGTCGTGTGTTGAACACCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGT----ATGGA 157988
|||||||| | || || ||| ||| || | || || ||| ||||||| |||||
Sbjct 1282828 GGTCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATGGA 1282885
Query 157989 AGTTATGCATGAGCGTAACGCACACAACTTCCC 158021
||| || ||||| ||||| || || ||||||||
Sbjct 1282886 AGTAATACATGAACGTAATGCTCATAACTTCCC 1282918
>seq1042
Length=564079
Score = 96.9 bits (106), Expect = 4e-15
Identities = 95/123 (77%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 157492 GGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATG 157551
|||||||| | | || |||| |||||||| || |||||||||||||| ||| |||
Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801
Query 157552 CTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCT 157611
| || |||||||| |||||||| || |||||||| || || ||||| | || |||||
Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCT 550741
Query 157612 GGG 157614
|||
Sbjct 550740 GGG 550738
>seq10
Length=33665772
Score = 96.9 bits (106), Expect = 4e-15
Identities = 91/115 (79%), Gaps = 2/115 (2%)
Strand=Plus/Plus
Query 157510 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAG 157569
|||| ||||||| | || || ||||||||||| |||| ||| | || |||||||||||
Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954
Query 157570 CACAATATTCTTATGCATCCGTTCCACATGCTCGGCGTTG--CTGGGGTATTCGG 157622
||||| || |||||||||| || |||||| | || || | |||| ||||||||
Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG 4333009
>seq1063
Length=431445
Score = 93.3 bits (102), Expect = 5e-14
Identities = 232/346 (67%), Gaps = 31/346 (9%)
Strand=Plus/Minus
Query 157510 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAG 157569
|||| ||||||| |||| || ||||||||||| ||| ||| | || || | ||||||
Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166
Query 157570 CACAATATTCTTATGCATCCGTTCCACATGCTCGGCGTTG--CTGGGGTATTCGGTGGAT 157627
||||| || |||||||||| || |||||| | || || | |||| ||||||||
Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----C 54110
Query 157628 CTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTT-----CGTGAAAC 157682
| | | | ||||||| || || || ||| | |||||| | ||||
Sbjct 54109 CCTAG-----TACTATGCATGG----TTCCTT-GGTCCACTCTTGTTTCATCAGGGAAAT 54060
Query 157683 AACTGAAACAGAGTCACAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGAC-GTA 157739
||||||| || || | | | | || || |||||| |||| |||||||| ||
Sbjct 54059 CACTGAAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTA 54002
Query 157740 CAA-----CATCGTTGCTGCACACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCA 157794
||| || || ||||| || ||||| || | || ||||||||||||| |||
Sbjct 54001 CAATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGT 53942
Query 157795 TTCAACAACAGCAGAAGTCTTCACTTCTTCCTCGCCGCATGGCCTG 157840
||||||||| | | | || |||||| | || || |||||||
Sbjct 53941 TTCAACAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896
>seq1024
Length=717246
Score = 84.2 bits (92), Expect = 2e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 157945 AACACCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGT 158004
||||| ||||| ||| || | ||||| ||| |||||||||||||| |||||||| |||
Sbjct 156788 AACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGT 156847
Query 158005 AACGCACACAACTTCCCACTGGATCT 158030
|| || ||||||||||| || || ||
Sbjct 156848 AATGCTCACAACTTCCCTCTAGACCT 156873
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 545224123236720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |