Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_023587.1
Length=189311
Score E
Sequences producing significant alignments: (Bits) Value
seq9 147 3e-30
seq1063 134 2e-26
seq1382 125 9e-24
seq10 125 9e-24
seq1042 109 7e-19
seq1035 105 8e-18
seq5 82.4 9e-11
>seq9
Length=34148863
Score = 147 bits (162), Expect = 3e-30
Identities = 176/234 (75%), Gaps = 4/234 (2%)
Strand=Plus/Plus
Query 177896 TGAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGC 177955
||||| |||||| | | ||| |||||||| || ||||| ||||||||| || ||
Sbjct 1506928 TGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGC 1506987
Query 177956 ACCTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCGGTCAAGGTTCATTCT 178014
||||||||||| || | || || ||||| | |||| ||| | |||||||| ||||
Sbjct 1506988 TCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCT 1507046
Query 178015 CCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATG-CTTGTATTCCAAGCA 178073
| |||| ||||||| | || || ||| | | ||| |||| |||| ||||||| | |||
Sbjct 1507047 CTGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTATTGTATTTCTGGCA 1507105
Query 178074 GAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGGTATTC 178127
|||||||| ||||||||||| | | | |||||| | ||||| |||| ||||||
Sbjct 1507106 GAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGTGTATTC 1507159
>seq1063
Length=431445
Score = 134 bits (148), Expect = 2e-26
Identities = 236/341 (69%), Gaps = 21/341 (6%)
Strand=Plus/Minus
Query 178017 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 178076
|||| ||||||| |||| || ||||||||||| ||| |||| ||||||| | ||||||
Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166
Query 178077 CACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTG--CTGGGGTATTCGGTGGAT 178134
||||| ||||||||||| | || |||||| | ||||| | |||| ||||||||
Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 54111
Query 178135 CTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGACAG 178194
| || | |||||||||| | || |||| || || | || | || |
Sbjct 54110 CCCT----AGTACTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTG 54055
Query 178195 AAACTGAGTCCCAG--AACTATGGTTACAAGTTCGGACAAGAAGAAGAAAC------ATA 178246
||| || ||| | | | | || || ||||| |||| ||||| || |||
Sbjct 54054 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 53997
Query 178247 TAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTTCAA 178306
| || || || || |||||||| || | || ||||||||||||||||| |||||
Sbjct 53996 GAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAA 53937
Query 178307 CAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTG 178347
|||||| ||||| | || |||||| | || || |||||||
Sbjct 53936 CAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896
>seq1382
Length=172696
Score = 125 bits (138), Expect = 9e-24
Identities = 239/345 (69%), Gaps = 19/345 (6%)
Strand=Plus/Plus
Query 178075 AACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCT--GGGGTATTCGGTGG 178132
||||||| ||||||||||| || || ||||| | ||| | ||| || |||||||| ||
Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554
Query 178133 ATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGAC 178192
|| || ||| |||||||||||| | || || ||| | || | || || ||
Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCAC 123614
Query 178193 AGAAACTGAGTCC-CAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATA-TAAC 178250
|||| || || || | | ||||||| ||||| |||||||||| || | | | ||
Sbjct 123615 TGAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTAC 123673
Query 178251 A--------TCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGT 178302
| | || || || |||||||| || | || |||||| |||||||||| |
Sbjct 123674 AATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTT 123733
Query 178303 TCAACAACTCCCGTTCACTGC---ACTT--CTTCCTCGCAGCATGGCCTGTAGTTGGAAT 178357
|||||||||| || | ||| | || | ||| | ||||| ||||| || |||| ||
Sbjct 123734 TCAACAACTCTCGCT-ACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTAT 123792
Query 178358 CTGGTTCACCGCACTTGGTGTATCCACCATGGCATTTAACCTCAA 178402
|||| |||| || | ||| | ||||||||| || ||||||||
Sbjct 123793 CTGGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837
>seq10
Length=33665772
Score = 125 bits (138), Expect = 9e-24
Identities = 234/341 (69%), Gaps = 21/341 (6%)
Strand=Plus/Plus
Query 178017 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 178076
|||| ||||||| | || || ||||||||||| |||| |||| |||||||||| ||||||
Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954
Query 178077 CACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTG--CTGGGGTATTCGGTGGAT 178134
||||| ||||||||||| | || |||||| | ||||| | |||| ||||||||
Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 4333009
Query 178135 CTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGACAG 178194
| || | |||||||||| | || | |||| || || | || | || |
Sbjct 4333010 CCCT----AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065
Query 178195 AAACTGAGTCCCAG--AACTATGGTTACAAGTTCGGACAAGAAGAAGAAAC------ATA 178246
||| || ||| | | | | || || ||||| |||| ||||| || |||
Sbjct 4333066 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 4333123
Query 178247 TAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTTCAA 178306
| ||| || | || |||||||| || | || |||| || ||||||||| |||||
Sbjct 4333124 GAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAA 4333183
Query 178307 CAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTG 178347
|||||| ||| || |||||| | || || |||||||
Sbjct 4333184 CAACTCGACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224
>seq1042
Length=564079
Score = 109 bits (120), Expect = 7e-19
Identities = 89/108 (82%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 178014 TCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCA 178073
|| |||| |||||||| || |||||||||||||| ||| |||| |||||||||| ||
Sbjct 550845 TCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATGATTGTATTCCAGGCT 550786
Query 178074 GAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGG 178121
|| ||||| |||||||||||||| || ||||| | ||| ||||||||
Sbjct 550785 GAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCTGGG 550738
>seq1035
Length=594915
Score = 105 bits (116), Expect = 8e-18
Identities = 260/393 (66%), Gaps = 26/393 (7%)
Strand=Plus/Plus
Query 179413 TTTGGTGTTGCGGCGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACA 179472
|||||||| || || || ||| ||| | || | || ||| | | | || |||||
Sbjct 236996 TTTGGTGTAGCAGCTATATTTCGATGAATCCTCTGATTCCAACGGTGGAATAATTGGACG 237055
Query 179473 CTCAACCCCTTTCACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCT 179532
| ||||| || | |||||||||||| ||| | | || | ||||||||| | |||
Sbjct 237056 TTGAACCCTTTGAATATGATGGGAGTTT-AGGAGTATTAGGCGCTGCTCTGCTATGCGCT 237114
Query 179533 ATTCATGGAGTAACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACAT-- 179590
|||||||| ||||| | || || || | |||||||| | ||||| ||||
Sbjct 237115 ATTCATGGT----CTGTATAAAACACTTTATTCGAAGATGGTAACGGTGCAAATACATAC 237170
Query 179591 --TTAAAGCGTTCGACTCTACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCG 179648
|| || || || | || |||| || ||||| ||||| ||||| || || |||||
Sbjct 237171 TGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTAACCG 237230
Query 179649 TTTTTGGTCGCAGATC-----TTCGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTC 179703
||||||||| || ||| || |||||| | ||| |||||| |||||| |
Sbjct 237231 TTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGG--------C 237282
Query 179704 TTTAAGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCAT----CATTGG 179759
||| | | ||||| | || | ||| | ||| | | ||||||| | | ||
Sbjct 237283 CTTATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGGTAGTAAGTCGG 237342
Query 179760 GCTAGCTCTTAATCTTCGTGCTTATGATTTTGT 179792
|| ||||| ||||| ||||| ||||| || ||
Sbjct 237343 TCTGGCTCTGAATCTACGTGCCTATGACTTCGT 237375
>seq5
Length=29377369
Score = 82.4 bits (90), Expect = 9e-11
Identities = 156/228 (68%), Gaps = 4/228 (2%)
Strand=Plus/Plus
Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597
||||| || || || ||||| | ||||| | || ||||| ||||| || ||||| ||
Sbjct 551497 TACATTCTGGACGCAGCTGAGGCTGCAGGCGTAGACCTTCCTTACTCTTGCCGTGCCGGA 551556
Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657
||||||||||| ||||||||| | | || || | || |||||||| || ||
Sbjct 551557 GCATGTTCTACGTGTGCTGGTCAGATGGTGTCTGGTAACGTTGATCAGTCCGATGGATCC 551616
Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATC--ATGACTTGCGTAGCATACCCCA 138715
|||||||| || || || || || | ||||| | || || || | ||||| |
Sbjct 551617 TTCCTTGACGAATCACAGATGGC--CAAGGGTTATCTTCTTACCTGTGTCTCTTACCCAA 551674
Query 138716 CATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTATACTGAT 138763
|||||| || || || | ||| | ||||| | || || || ||||
Sbjct 551675 GATCCGACTGCATCATCCACACTCATAAAGAAGGTGATCTCTATTGAT 551722
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 605612243272440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |