Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq9 147 3e-30 seq1063 134 2e-26 seq1382 125 9e-24 seq10 125 9e-24 seq1042 109 7e-19 seq1035 105 8e-18 seq5 82.4 9e-11 >seq9 Length=34148863 Score = 147 bits (162), Expect = 3e-30 Identities = 176/234 (75%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 177896 TGAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGC 177955 ||||| |||||| | | ||| |||||||| || ||||| ||||||||| || || Sbjct 1506928 TGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGC 1506987 Query 177956 ACCTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCGGTCAAGGTTCATTCT 178014 ||||||||||| || | || || ||||| | |||| ||| | |||||||| |||| Sbjct 1506988 TCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCT 1507046 Query 178015 CCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATG-CTTGTATTCCAAGCA 178073 | |||| ||||||| | || || ||| | | ||| |||| |||| ||||||| | ||| Sbjct 1507047 CTGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTATTGTATTTCTGGCA 1507105 Query 178074 GAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGGTATTC 178127 |||||||| ||||||||||| | | | |||||| | ||||| |||| |||||| Sbjct 1507106 GAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGTGTATTC 1507159 >seq1063 Length=431445 Score = 134 bits (148), Expect = 2e-26 Identities = 236/341 (69%), Gaps = 21/341 (6%) Strand=Plus/Minus Query 178017 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 178076 |||| ||||||| |||| || ||||||||||| ||| |||| ||||||| | |||||| Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166 Query 178077 CACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTG--CTGGGGTATTCGGTGGAT 178134 ||||| ||||||||||| | || |||||| | ||||| | |||| |||||||| Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 54111 Query 178135 CTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGACAG 178194 | || | |||||||||| | || |||| || || | || | || | Sbjct 54110 CCCT----AGTACTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTG 54055 Query 178195 AAACTGAGTCCCAG--AACTATGGTTACAAGTTCGGACAAGAAGAAGAAAC------ATA 178246 ||| || ||| | | | | || || ||||| |||| ||||| || ||| Sbjct 54054 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 53997 Query 178247 TAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTTCAA 178306 | || || || || |||||||| || | || ||||||||||||||||| ||||| Sbjct 53996 GAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAA 53937 Query 178307 CAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTG 178347 |||||| ||||| | || |||||| | || || ||||||| Sbjct 53936 CAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896 >seq1382 Length=172696 Score = 125 bits (138), Expect = 9e-24 Identities = 239/345 (69%), Gaps = 19/345 (6%) Strand=Plus/Plus Query 178075 AACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCT--GGGGTATTCGGTGG 178132 ||||||| ||||||||||| || || ||||| | ||| | ||| || |||||||| || Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554 Query 178133 ATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGAC 178192 || || ||| |||||||||||| | || || ||| | || | || || || Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCAC 123614 Query 178193 AGAAACTGAGTCC-CAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATA-TAAC 178250 |||| || || || | | ||||||| ||||| |||||||||| || | | | || Sbjct 123615 TGAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTAC 123673 Query 178251 A--------TCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGT 178302 | | || || || |||||||| || | || |||||| |||||||||| | Sbjct 123674 AATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTT 123733 Query 178303 TCAACAACTCCCGTTCACTGC---ACTT--CTTCCTCGCAGCATGGCCTGTAGTTGGAAT 178357 |||||||||| || | ||| | || | ||| | ||||| ||||| || |||| || Sbjct 123734 TCAACAACTCTCGCT-ACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTAT 123792 Query 178358 CTGGTTCACCGCACTTGGTGTATCCACCATGGCATTTAACCTCAA 178402 |||| |||| || | ||| | ||||||||| || |||||||| Sbjct 123793 CTGGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 >seq10 Length=33665772 Score = 125 bits (138), Expect = 9e-24 Identities = 234/341 (69%), Gaps = 21/341 (6%) Strand=Plus/Plus Query 178017 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 178076 |||| ||||||| | || || ||||||||||| |||| |||| |||||||||| |||||| Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954 Query 178077 CACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTG--CTGGGGTATTCGGTGGAT 178134 ||||| ||||||||||| | || |||||| | ||||| | |||| |||||||| Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 4333009 Query 178135 CTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGACAG 178194 | || | |||||||||| | || | |||| || || | || | || | Sbjct 4333010 CCCT----AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065 Query 178195 AAACTGAGTCCCAG--AACTATGGTTACAAGTTCGGACAAGAAGAAGAAAC------ATA 178246 ||| || ||| | | | | || || ||||| |||| ||||| || ||| Sbjct 4333066 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 4333123 Query 178247 TAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTTCAA 178306 | ||| || | || |||||||| || | || |||| || ||||||||| ||||| Sbjct 4333124 GAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAA 4333183 Query 178307 CAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTG 178347 |||||| ||| || |||||| | || || ||||||| Sbjct 4333184 CAACTCGACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224 >seq1042 Length=564079 Score = 109 bits (120), Expect = 7e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 178014 TCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCA 178073 || |||| |||||||| || |||||||||||||| ||| |||| |||||||||| || Sbjct 550845 TCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATGATTGTATTCCAGGCT 550786 Query 178074 GAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGG 178121 || ||||| |||||||||||||| || ||||| | ||| |||||||| Sbjct 550785 GAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCTGGG 550738 >seq1035 Length=594915 Score = 105 bits (116), Expect = 8e-18 Identities = 260/393 (66%), Gaps = 26/393 (7%) Strand=Plus/Plus Query 179413 TTTGGTGTTGCGGCGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACA 179472 |||||||| || || || ||| ||| | || | || ||| | | | || ||||| Sbjct 236996 TTTGGTGTAGCAGCTATATTTCGATGAATCCTCTGATTCCAACGGTGGAATAATTGGACG 237055 Query 179473 CTCAACCCCTTTCACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCT 179532 | ||||| || | |||||||||||| ||| | | || | ||||||||| | ||| Sbjct 237056 TTGAACCCTTTGAATATGATGGGAGTTT-AGGAGTATTAGGCGCTGCTCTGCTATGCGCT 237114 Query 179533 ATTCATGGAGTAACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACAT-- 179590 |||||||| ||||| | || || || | |||||||| | ||||| |||| Sbjct 237115 ATTCATGGT----CTGTATAAAACACTTTATTCGAAGATGGTAACGGTGCAAATACATAC 237170 Query 179591 --TTAAAGCGTTCGACTCTACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCG 179648 || || || || | || |||| || ||||| ||||| ||||| || || ||||| Sbjct 237171 TGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTAACCG 237230 Query 179649 TTTTTGGTCGCAGATC-----TTCGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTC 179703 ||||||||| || ||| || |||||| | ||| |||||| |||||| | Sbjct 237231 TTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGG--------C 237282 Query 179704 TTTAAGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCAT----CATTGG 179759 ||| | | ||||| | || | ||| | ||| | | ||||||| | | || Sbjct 237283 CTTATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGGTAGTAAGTCGG 237342 Query 179760 GCTAGCTCTTAATCTTCGTGCTTATGATTTTGT 179792 || ||||| ||||| ||||| ||||| || || Sbjct 237343 TCTGGCTCTGAATCTACGTGCCTATGACTTCGT 237375 >seq5 Length=29377369 Score = 82.4 bits (90), Expect = 9e-11 Identities = 156/228 (68%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 ||||| || || || ||||| | ||||| | || ||||| ||||| || ||||| || Sbjct 551497 TACATTCTGGACGCAGCTGAGGCTGCAGGCGTAGACCTTCCTTACTCTTGCCGTGCCGGA 551556 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 ||||||||||| ||||||||| | | || || | || |||||||| || || Sbjct 551557 GCATGTTCTACGTGTGCTGGTCAGATGGTGTCTGGTAACGTTGATCAGTCCGATGGATCC 551616 Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATC--ATGACTTGCGTAGCATACCCCA 138715 |||||||| || || || || || | ||||| | || || || | ||||| | Sbjct 551617 TTCCTTGACGAATCACAGATGGC--CAAGGGTTATCTTCTTACCTGTGTCTCTTACCCAA 551674 Query 138716 CATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTATACTGAT 138763 |||||| || || || | ||| | ||||| | || || || |||| Sbjct 551675 GATCCGACTGCATCATCCACACTCATAAAGAAGGTGATCTCTATTGAT 551722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605612243272440