Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq10 136 8e-27
seq9 136 8e-27
seq6 118 2e-21
seq8 116 7e-21
seq2973 100 6e-16
seq5 95.1 2e-14
seq7 89.7 1e-12
>seq10
Length=33665772
Score = 136 bits (150), Expect = 8e-27
Identities = 159/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| || || | ||| || || || || ||||| ||||| || || | || | | |||
Sbjct 14516033 CGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGCAAGGGTGCGACCA 14516092
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| |||| |||||| ||||||||||||| ||||| || || || || || || || |||
Sbjct 14516093 TCCTCTAATTGTTTCCCAGCAAAGATTAACCTTTGCTGGTCCGGTGGAATACCCTCTTTA 14516152
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|||||||| || ||||| ||||| ||||| ||||| || ||| ||||| | || ||
Sbjct 14516153 TCTTGAATTTTAGCTTTCACATTATCAATAGTATCGGAAGATTCAACTTCAAGGGTGATG 14516212
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||||| || | ||||| | ||||| |||||
Sbjct 14516213 GTCTTGCCGGTGAGAGTCTTAATGAATATTTGCAT 14516247
Score = 107 bits (118), Expect = 4e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 82677 AAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACA 82736
||||| | || ||||| ||||| || || || ||||| ||||||||||| || ||||||
Sbjct 14516990 AAGATCAACCTCTGTTGGTCTGGGGGGATGCCCTCCTTGTCTTGAATCTTGGCCTTTACA 14517049
Query 82737 TTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTT 82796
|| ||||| || ||| || ||| || || | || || |||||||| || | |||||
Sbjct 14517050 TTATCAATAGTGTCAGAAGATTCAACCTCAAGGGTGATGGTCTTGCCGGTTAGTGTCTTA 14517109
Query 82797 ACAAATATCTGCAT 82810
||||||||||||||
Sbjct 14517110 ACAAATATCTGCAT 14517123
>seq9
Length=34148863
Score = 136 bits (150), Expect = 8e-27
Identities = 159/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| || || | ||| || || ||||| ||||| || || ||||| | || | | |||
Sbjct 33548981 CGGAGCACCAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGCCCG 33549040
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || || || || ||||||||||| || || || ||||| || || || || |||||
Sbjct 33549041 TCCTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCCGGTGGAATCCCCTCCTTG 33549100
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|| || |||||||| || ||||| |||||||| || | || || ||||| || ||
Sbjct 33549101 TCCTGGATCTTTGCCTTGACATTATCAATCGTGTCCGAACTCTCCACCTCCAAGGTAATG 33549160
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| ||||| | |||||| ||||| ||||||||
Sbjct 33549161 GTCTTCCCTGTGAGCGTCTTAACAAAGATCTGCAT 33549195
Score = 93.3 bits (102), Expect = 8e-14
Identities = 138/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657
||| || | ||| || ||||| || ||||| || || ||||| | || | | || ||
Sbjct 33549211 CAGCACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGGCCATC 33549270
Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717
|| || || || ||||||||||| || ||||| || || || || || || ||||| ||
Sbjct 33549271 CTCAAGCTGCTTGCCAGCAAAGATGAGCCTTTGCTGGTCCGGGGGAATACCCTCCTTGTC 33549330
Query 82718 TTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTATCG 82776
|||||||| || |||||||| || || || || || | || || || | || || |
Sbjct 33549331 CTGAATCTTGGCCTTTACATTGTCGATGGTGTC-CGAGCTCTCCACCTCAAGGGTGATGG 33549389
Query 82777 TCTTGCCTGTCAA 82789
|||| || |||||
Sbjct 33549390 TCTTCCCGGTCAA 33549402
>seq6
Length=34899179
Score = 118 bits (130), Expect = 2e-21
Identities = 158/217 (73%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| || || | ||| ||||| ||||| ||||| || ||||| || | || | | ||
Sbjct 13154759 ACGAAGGACCAGGTGAAGAGTGGATTCCTTCTGGATGTTATAGTCTGCCAGTGTGCGCCC 13154700
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
|| || || || || || ||||||||||| || ||||| ||||| || ||||| |||||
Sbjct 13154699 ATCCTCGAGCTGCTTACCCGCAAAGATTAGCCTCTGTTGGTCTGGTGGGATTCCCTCCTT 13154640
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773
|| || |||||||| || ||||| || || || || || | || || |||| ||| |
Sbjct 13154639 GTCCTGTATCTTTGCCTTCACATTGTCGATAGTGTC-CGAGCTCTCAACCTCCAGAGTGA 13154581
Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| ||||| || || | || || ||||| || |||||
Sbjct 13154580 TGGTCTTCCCCGTGAGGGTTTTCACAAAAATTTGCAT 13154544
Score = 107 bits (118), Expect = 4e-18
Identities = 124/167 (74%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
||||| || | | ||| || ||||| || |||||||| ||||| |||||||| ||||
Sbjct 13154542 CCTCCCCTGAGCCTCAGCACCAAGTGGAGGGTAGATTCCTTCTGGATATTATAGTCAGCC 13154483
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
| | | || || || | ||| || ||||||||||| || || || || ||||||||
Sbjct 13154482 AAGGTGCGGCCATCCTCCAATTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGAGGA 13154423
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750
|| || ||||| || || |||||||| || ||||| || || || ||
Sbjct 13154422 ATGCCCTCCTTGTCCTGTATCTTTGCCTTCACATTGTCGATAGTGTC 13154376
>seq8
Length=35439739
Score = 116 bits (128), Expect = 7e-21
Identities = 157/216 (73%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| || || | ||| ||||| || || ||||| ||||| ||||| | || | | ||||
Sbjct 1222072 CGGAGCACCAGGTGAAGAGTGGACTCCTTCTGAATATTGTAATCGGCCAGGGTGCGACCG 1222131
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || || || || ||||||||||| || || || || || || || || || |||||
Sbjct 1222132 TCCTCGAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTG 1222191
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774
|| || |||||||| || || || || ||||| ||| || | || || |||| || ||
Sbjct 1222192 TCCTGGATCTTTGCCTTAACGTTGTCGATCGTGTCA-GAGCTCTCAACCTCCAGGGTGAT 1222250
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || || | ||||| || || ||||||||
Sbjct 1222251 GGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 1222286
>seq2973
Length=40044
Score = 100 bits (110), Expect = 6e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| || |||| ||| ||||| || || |||||||| || || || | || | | |||
Sbjct 14949 CGGAGCACTAGGTGGAGAGTCGACTCCTTCTGTATGTTGTAGTCCGCAAGCGTACGGCCG 14890
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || || ||||| || || |||||||| ||||| || || || || || || |||||
Sbjct 14889 TCCTCCAGCTGTTTCCCGGCGAAGATTAGCCTTTGCTGGTCCGGCGGGATCCCCTCCTTG 14830
Query 82716 TCTTGAATCTTTGCTTTTACATT 82738
||||||||||||||||| || ||
Sbjct 14829 TCTTGAATCTTTGCTTTCACGTT 14807
>seq5
Length=29377369
Score = 95.1 bits (104), Expect = 2e-14
Identities = 152/216 (70%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| ||||| | ||| ||||| ||||| ||||| || | || || ||| | | ||
Sbjct 457970 CGGAGAACCAGGTGAAGAGTGGATTCCTTCTGAATGCTGTAGTCGTCCAGAGTGCGGCCA 457911
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || || ||||| || |||||||| || || || ||||| || | || || |||||
Sbjct 457910 TCCTCGAGCTGTTTCCCGGCAAAGATGAGCCTCTGCTGATCCGGTGAGATGCCCTCCTTG 457851
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774
|| || ||||||||||| | ||| | ||||| || | || | || || |||| || ||
Sbjct 457850 TCATGGATCTTTGCTTTAAGATTGGCGATCGTGTC-TGAGCTCTCCACCTCCAGGGTGAT 457792
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| || || || | || || ||||| || |||||
Sbjct 457791 GGTGTTTCCGGTGAGGGTTTTGACAAAAATTTGCAT 457756
>seq7
Length=28617404
Score = 89.7 bits (98), Expect = 1e-12
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658
|| || | ||||||||| || |||||||| || || ||||||| || ||| || |||
Sbjct 27638088 AGGACAAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAATCAGCCAGGGTTCGGCCATCT 27638147
Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718
|| || || || || |||||||| | ||| || || ||||||||||| || ||||| ||
Sbjct 27638148 TCCAGCTGCTTACCTGCAAAGATCAATCTCTGCTGGTCTGGAGGTATCCCCTCCTTGTCC 27638207
Query 82719 TG 82720
||
Sbjct 27638208 TG 27638209
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981735884240801
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |