Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq10 136 8e-27 seq9 136 8e-27 seq6 118 2e-21 seq8 116 7e-21 seq2973 100 6e-16 seq5 95.1 2e-14 seq7 89.7 1e-12 >seq10 Length=33665772 Score = 136 bits (150), Expect = 8e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || || || ||||| ||||| || || | || | | ||| Sbjct 14516033 CGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGCAAGGGTGCGACCA 14516092 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || |||| |||||| ||||||||||||| ||||| || || || || || || || ||| Sbjct 14516093 TCCTCTAATTGTTTCCCAGCAAAGATTAACCTTTGCTGGTCCGGTGGAATACCCTCTTTA 14516152 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 |||||||| || ||||| ||||| ||||| ||||| || ||| ||||| | || || Sbjct 14516153 TCTTGAATTTTAGCTTTCACATTATCAATAGTATCGGAAGATTCAACTTCAAGGGTGATG 14516212 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||| | ||||| ||||| Sbjct 14516213 GTCTTGCCGGTGAGAGTCTTAATGAATATTTGCAT 14516247 Score = 107 bits (118), Expect = 4e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 82677 AAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACA 82736 ||||| | || ||||| ||||| || || || ||||| ||||||||||| || |||||| Sbjct 14516990 AAGATCAACCTCTGTTGGTCTGGGGGGATGCCCTCCTTGTCTTGAATCTTGGCCTTTACA 14517049 Query 82737 TTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTT 82796 || ||||| || ||| || ||| || || | || || |||||||| || | ||||| Sbjct 14517050 TTATCAATAGTGTCAGAAGATTCAACCTCAAGGGTGATGGTCTTGCCGGTTAGTGTCTTA 14517109 Query 82797 ACAAATATCTGCAT 82810 |||||||||||||| Sbjct 14517110 ACAAATATCTGCAT 14517123 >seq9 Length=34148863 Score = 136 bits (150), Expect = 8e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || ||||| ||||| || || ||||| | || | | ||| Sbjct 33548981 CGGAGCACCAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGCCCG 33549040 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| || || || ||||| || || || || ||||| Sbjct 33549041 TCCTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCCGGTGGAATCCCCTCCTTG 33549100 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || |||||||| || ||||| |||||||| || | || || ||||| || || Sbjct 33549101 TCCTGGATCTTTGCCTTGACATTATCAATCGTGTCCGAACTCTCCACCTCCAAGGTAATG 33549160 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| ||||| | |||||| ||||| |||||||| Sbjct 33549161 GTCTTCCCTGTGAGCGTCTTAACAAAGATCTGCAT 33549195 Score = 93.3 bits (102), Expect = 8e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657 ||| || | ||| || ||||| || ||||| || || ||||| | || | | || || Sbjct 33549211 CAGCACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGGCCATC 33549270 Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 || || || || ||||||||||| || ||||| || || || || || || ||||| || Sbjct 33549271 CTCAAGCTGCTTGCCAGCAAAGATGAGCCTTTGCTGGTCCGGGGGAATACCCTCCTTGTC 33549330 Query 82718 TTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTATCG 82776 |||||||| || |||||||| || || || || || | || || || | || || | Sbjct 33549331 CTGAATCTTGGCCTTTACATTGTCGATGGTGTC-CGAGCTCTCCACCTCAAGGGTGATGG 33549389 Query 82777 TCTTGCCTGTCAA 82789 |||| || ||||| Sbjct 33549390 TCTTCCCGGTCAA 33549402 >seq6 Length=34899179 Score = 118 bits (130), Expect = 2e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||| ||||| ||||| ||||| || ||||| || | || | | || Sbjct 13154759 ACGAAGGACCAGGTGAAGAGTGGATTCCTTCTGGATGTTATAGTCTGCCAGTGTGCGCCC 13154700 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || || || || || ||||||||||| || ||||| ||||| || ||||| ||||| Sbjct 13154699 ATCCTCGAGCTGCTTACCCGCAAAGATTAGCCTCTGTTGGTCTGGTGGGATTCCCTCCTT 13154640 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773 || || |||||||| || ||||| || || || || || | || || |||| ||| | Sbjct 13154639 GTCCTGTATCTTTGCCTTCACATTGTCGATAGTGTC-CGAGCTCTCAACCTCCAGAGTGA 13154581 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || || | || || ||||| || ||||| Sbjct 13154580 TGGTCTTCCCCGTGAGGGTTTTCACAAAAATTTGCAT 13154544 Score = 107 bits (118), Expect = 4e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | | ||| || ||||| || |||||||| ||||| |||||||| |||| Sbjct 13154542 CCTCCCCTGAGCCTCAGCACCAAGTGGAGGGTAGATTCCTTCTGGATATTATAGTCAGCC 13154483 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || || || | ||| || ||||||||||| || || || || |||||||| Sbjct 13154482 AAGGTGCGGCCATCCTCCAATTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGAGGA 13154423 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 || || ||||| || || |||||||| || ||||| || || || || Sbjct 13154422 ATGCCCTCCTTGTCCTGTATCTTTGCCTTCACATTGTCGATAGTGTC 13154376 >seq8 Length=35439739 Score = 116 bits (128), Expect = 7e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| ||||| || || ||||| ||||| ||||| | || | | |||| Sbjct 1222072 CGGAGCACCAGGTGAAGAGTGGACTCCTTCTGAATATTGTAATCGGCCAGGGTGCGACCG 1222131 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| || || || || || || || || || ||||| Sbjct 1222132 TCCTCGAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTG 1222191 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774 || || |||||||| || || || || ||||| ||| || | || || |||| || || Sbjct 1222192 TCCTGGATCTTTGCCTTAACGTTGTCGATCGTGTCA-GAGCTCTCAACCTCCAGGGTGAT 1222250 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | ||||| || || |||||||| Sbjct 1222251 GGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 1222286 >seq2973 Length=40044 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || |||| ||| ||||| || || |||||||| || || || | || | | ||| Sbjct 14949 CGGAGCACTAGGTGGAGAGTCGACTCCTTCTGTATGTTGTAGTCCGCAAGCGTACGGCCG 14890 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || ||||| || || |||||||| ||||| || || || || || || ||||| Sbjct 14889 TCCTCCAGCTGTTTCCCGGCGAAGATTAGCCTTTGCTGGTCCGGCGGGATCCCCTCCTTG 14830 Query 82716 TCTTGAATCTTTGCTTTTACATT 82738 ||||||||||||||||| || || Sbjct 14829 TCTTGAATCTTTGCTTTCACGTT 14807 >seq5 Length=29377369 Score = 95.1 bits (104), Expect = 2e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | ||| ||||| ||||| ||||| || | || || ||| | | || Sbjct 457970 CGGAGAACCAGGTGAAGAGTGGATTCCTTCTGAATGCTGTAGTCGTCCAGAGTGCGGCCA 457911 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || ||||| || |||||||| || || || ||||| || | || || ||||| Sbjct 457910 TCCTCGAGCTGTTTCCCGGCAAAGATGAGCCTCTGCTGATCCGGTGAGATGCCCTCCTTG 457851 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774 || || ||||||||||| | ||| | ||||| || | || | || || |||| || || Sbjct 457850 TCATGGATCTTTGCTTTAAGATTGGCGATCGTGTC-TGAGCTCTCCACCTCCAGGGTGAT 457792 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || || | || || ||||| || ||||| Sbjct 457791 GGTGTTTCCGGTGAGGGTTTTGACAAAAATTTGCAT 457756 >seq7 Length=28617404 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || | ||||||||| || |||||||| || || ||||||| || ||| || ||| Sbjct 27638088 AGGACAAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAATCAGCCAGGGTTCGGCCATCT 27638147 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || || || || || |||||||| | ||| || || ||||||||||| || ||||| || Sbjct 27638148 TCCAGCTGCTTACCTGCAAAGATCAATCTCTGCTGGTCTGGAGGTATCCCCTCCTTGTCC 27638207 Query 82719 TG 82720 || Sbjct 27638208 TG 27638209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981735884240801