Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq11 123 6e-23 seq9 122 2e-22 seq8 120 7e-22 seq5 118 3e-21 seq4576 109 1e-18 seq6 102 2e-16 seq3 96.9 8e-15 seq2973 91.5 3e-13 seq7 89.7 1e-12 seq4 86.0 1e-11 >seq11 Length=25514024 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || |||||||| || || |||||||| | ||||| || || || ||| Sbjct 16241638 CAGATCTTTGTGAAGACGCTCACCGGGAAGACGATCACCCTCGAAGTCGAGAGCTCGGAC 16241579 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || || ||||| ||| |||||| ||| Sbjct 16241578 ACCATCGACAACGTGAAGGCCAAGATTCAGGACAAGGAAGGCATTCCACCGGACCAGCAA 16241519 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| || || |||||| | || || || | ||| | || || |||||| || Sbjct 16241518 AGGCTCATCTTTGCGGGCAAGCAGCTCGAGGACGGCCGTACTCTTGCAGACTACAACATC 16241459 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| ||||||||||| || Sbjct 16241458 CAGAAGGAGTCCACTCTTCACCTCGT 16241433 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || |||||||| | || ||||| || ||||| |||| || ||| Sbjct 15140913 ACGGGGAAGACGATCACCCTTGAGGTGGAGTCGTCGGACACGATCGACAACGTGAAGGCG 15140854 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || || || || ||||||| || | || ||||||||||| ||| Sbjct 15140853 AAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCCTCATCTTCGCCGGGAAG 15140794 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||| || || | || | ||||| || ||| ||||||| |||||||| || ||| Sbjct 15140793 CAGCTGGAGGACGGCCGCACCCTCGCCGACTATAACATCCAGAAGGAGTCTACCCTCCAC 15140734 Query 206374 CTTGT 206378 || || Sbjct 15140733 CTGGT 15140729 >seq9 Length=34148863 Score = 122 bits (134), Expect = 2e-22 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||| | || ||||| || || ||||| |||| |||||| Sbjct 33549399 ACCGGGAAGACCATCACCCTTGAGGTGGAGAGCTCGGACACCATCGACAATGTAAAGGCC 33549340 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || || || ||| |||||| ||||| || ||||| || || ||| Sbjct 33549339 AAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAGCAAAGGCTCATCTTTGCTGGCAAG 33549280 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | || ||||| | || |||| ||||||||| | ||||| |||||||| |||||| Sbjct 33549279 CAGCTTGAGGATGGCCGCACCCTGGCAGATTACAACATTCAGAAGGAGTCTACCCTTCAC 33549220 Query 206374 CTTGTTTTGAGACTT 206388 ||||| |||||||| Sbjct 33549219 CTTGTGCTGAGACTT 33549205 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || ||||||||||| || || || || ||||| ||||| ||||| ||| Sbjct 33549192 CAGATCTTTGTTAAGACGCTCACAGGGAAGACCATTACCTTGGAGGTGGAGAGTTCGGAC 33549133 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||| || || || || || ||| ||||| || Sbjct 33549132 ACGATTGATAATGTCAAGGCAAAGATCCAGGACAAGGAGGGGATTCCACCGGATCAGCAG 33549073 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| || || |||||| |||| || || | || |||| ||||||||| | Sbjct 33549072 AGGCTGATCTTTGCTGGGAAGCAGCTGGAGGACGGGCGCACCCTGGCAGATTACAACATT 33549013 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| || || || |||||||| || Sbjct 33549012 CAGAAGGAATCCACCCTTCACCTGGT 33548987 >seq8 Length=35439739 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| ||||| || ||||| |||| || || || |||||| Sbjct 1222283 CAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCCTGGAGGTTGAGAGCTCTGAC 1222224 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||| || || || || || ||| |||||| || Sbjct 1222223 ACGATCGACAACGTTAAGGCAAAGATCCAGGACAAGGAGGGTATTCCACCGGACCAGCAG 1222164 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || |||||||| || || |||||| | || || || | || ||||||||||||| | Sbjct 1222163 AGGCTTATCTTTGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGGCCGATTACAATATT 1222104 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| ||||||||||| || Sbjct 1222103 CAGAAGGAGTCCACTCTTCACCTGGT 1222078 Score = 105 bits (116), Expect = 2e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || || || ||||| || || || || |||||| |||| Sbjct 4858012 AAGACTCTCACTGGGAAGACCATTACCTTGGAGGTCGAGAGCTCGGACACAATCGACAAC 4858071 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || ||||||| ||||| || ||||| Sbjct 4858072 GTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAAAGGCTCATCTTT 4858131 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || ||| | ||||| || | ||| | |||||||||||| ||||||| ||||| Sbjct 4858132 GCAGGCAAACAGCTCGAAGACGGCCGCACTCTTGCCGATTACAACATCCAGAAGGAGTCC 4858191 Query 206365 ACTCTTCACCTTGTTTTGAGACT 206387 || || || || || |||| || Sbjct 4858192 ACGCTCCATCTGGTGCTGAGGCT 4858214 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||| || || || |||||||| | || |||||| || ||||| | || Sbjct 26901020 AAGACGCTGACGGGGAAGACGATCACCCTCGAGGTGGAATCGTCGGACACGATTGACAAC 26900961 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || || || || || |||||| || | || |||||| Sbjct 26900960 GTGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCGGATCAGCAGCGTCTCATCTTC 26900901 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| |||| ||||| | || | ||||| |||||| | ||||| ||||| Sbjct 26900900 GCCGGAAAGCAGCTGGAGGATGGCCGAACCCTCGCCGACTACAACATTCAGAAGGAGTCC 26900841 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 26900840 ACGCTCCACCTCGT 26900827 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| | || ||||| || ||||| |||| Sbjct 32122247 AAGACCCTTACGGGGAAGACAATCACCCTCGAGGTGGAGTCCTCGGACACGATCGATAAC 32122306 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| || ||||||| || || || |||||| Sbjct 32122307 GTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCGCCGGACCAGCAGAGGCTCATCTTC 32122366 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || || || | || | ||||| |||||| ||||||| ||||| Sbjct 32122367 GCCGGGAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCC 32122426 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 32122427 ACCCTCCACCTCGT 32122440 >seq5 Length=29377369 Score = 118 bits (130), Expect = 3e-21 Identities = 158/215 (73%), Gaps = 5/215 (2%) Strand=Plus/Plus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| ||||| ||||| || ||||| |||| ||||| || || ||||| | Sbjct 457764 TTTTGTCAAAACCCTCACCGGAAACACCATCACCCTGGAGGTGGAGAGCTCAGACACGAT 457823 Query 206238 CG--AATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGA 206295 || |||| ||||||||| ||| || || || || || || | ||||| || || Sbjct 457824 CGCCAATCT-TAAAGCAAA-GATCCATGACAAGGAGGGCATCTCACCGGATCAGCAGAGG 457881 Query 206296 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 206355 || ||||| ||||| || ||| | || ||||| | ||| ||| ||| |||| | | ||| Sbjct 457882 CTCATCTTTGCCGGGAAACAGCTCGAGGATGGCCGCACTCTGGACGACTACAGCATTCAG 457941 Query 206356 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || ||||||||||| ||| | |||| || Sbjct 457942 AAGGAATCCACTCTTCACCTGGTTCTCCGACTCCG 457976 Score = 95.1 bits (104), Expect = 3e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || || || ||||| | ||| | || || || || || ||||| |||| Sbjct 457539 CAAGACCCTTACCGGCAAAACCACCACCCTCGAGGTCGAGAGCTCGGACACCATCGAGAA 457598 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| ||||| || || || || |||| ||||| || ||||| Sbjct 457599 TGTGAAGGCTAAGATGCAAGACAAGGAGGGTATCCCTGTGGACCAGCAAAGGCTCATCTT 457658 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| ||||| ||||||||||| | || || ||||||||| | |||| || || || Sbjct 457659 TGCCGGCAAGCAATTGGAAGATGGCCGCACCTTAGCCGATTACTCCATCCACAAGGAATC 457718 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| ||||| | || ||||||| || Sbjct 457719 TACCCTTCATTTGGTAATGAGACTCCG 457745 >seq4576 Length=2771 Score = 109 bits (120), Expect = 1e-18 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || |||||||| |||||||| ||||| | || || ||||| || ||| Sbjct 2494 CAGATCTTTGTTAAGACGCTCACTGGAAAAACCATCACCCTCGAGGTCGAAAGCTCCGAC 2553 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||||| || ||| || || ||||| || || || ||| || Sbjct 2554 ACCATCGACAACGTCAAAGCTAA-GATCCAGGACAAAGAGGGCATCCCTCCCGACCAGCA 2612 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 ||| || || ||||| || |||||| | || ||||| | || | || || |||||| | Sbjct 2613 AAGGCTCATTTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTTGCGGACTACAACAT 2672 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||||||||| || || ||||| || Sbjct 2673 CCAGAAAGAGTCGACGCTCCACCTCGT 2699 >seq6 Length=34899179 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || |||||| |||| || || || || ||||| |||| Sbjct 13154559 AAAACCCTCACGGGGAAGACCATCACTCTGGAGGTTGAGAGCTCGGACACTATCGACAAT 13154618 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| || || || || ||||| || ||| || || || ||||| Sbjct 13154619 GTGAAGGCAAAGATACAGGACAAGGAGGGAATCCCACCAGACCAACAGAGGCTAATCTTT 13154678 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | || ||||| | || |||| || || ||| ||||||| || || Sbjct 13154679 GCGGGTAAGCAGCTCGAGGATGGGCGCACACTGGCAGACTATAACATCCAGAAGGAATCC 13154738 Query 206365 ACTCTTCACCTTGT 206378 ||||||||||| || Sbjct 13154739 ACTCTTCACCTGGT 13154752 >seq3 Length=30470407 Score = 96.9 bits (106), Expect = 8e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 ||||| | || || || |||||||| ||||||||||| | || ||||| ||||||||| Sbjct 29005125 CAAAGGTTGATTTTTGCGGGAAAGCAATTGGAAGATGGCCGCACCTTGGCTGATTACAAC 29005066 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 | ||||| ||||| |||||||||||||| ||||| || Sbjct 29005065 ATTCAGAAGGAGTCGACTCTTCACCTTGTCTTGAGGCT 29005028 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 204755 AGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTT 204814 || ||||| |||||||||||||| ||||| ||||| | || || |||||||| || | Sbjct 29005028 AGCCTCAAGACAAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAATCAGCCAAGGTGCGG 29005087 Query 204815 CCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||||| |||||||| || || || | || ||| || Sbjct 29005088 CCATCTTCCAATTGCTTTCCCGCAAAAATCAACCTTTGCTG 29005128 >seq2973 Length=40044 Score = 91.5 bits (100), Expect = 3e-13 Identities = 100/132 (76%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGC 206306 |||||||| ||||||||| || || || || ||||||| ||||| || |||||||| Sbjct 14813 AAAGCAAA-GATTCAAGACAAGGAGGGGATCCCGCCGGACCAGCAAAGGCTAATCTTCGC 14871 Query 206307 CGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 ||| || ||| |||| || || | || | || || |||||| | ||||| ||||| || Sbjct 14872 CGGGAAACAGCTGGAGGACGGCCGTACGCTTGCGGACTACAACATACAGAAGGAGTCGAC 14931 Query 206367 TCTTCACCTTGT 206378 ||| ||||| || Sbjct 14932 TCTCCACCTAGT 14943 >seq7 Length=28617404 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 || ||| | ||||| || || |||||| |||||||||| | || |||| ||||||||| Sbjct 27638179 CAGAGATTGATCTTTGCAGGTAAGCAGCTGGAAGATGGCCGAACCCTGGCTGATTACAAC 27638120 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||||| ||||| |||||||| Sbjct 27638119 ATCCAGAAAGAGTCAACTCTGCACCTTGT 27638091 >seq4 Length=30051516 Score = 86.0 bits (94), Expect = 1e-11 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 || ||| | || || || || ||||| ||||||||||| || ||| | || || |||||| Sbjct 3354325 CAGAGATTGATTTTTGCTGGGAAGCAATTGGAAGATGGCAGAACTCTTGCAGACTACAAC 3354384 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTC 206389 ||||||||||||| || ||||| || ||| |||| |||| Sbjct 3354385 ATCCAGAAAGAGTCGACACTTCATCTGGTTCTGAGGCTTC 3354424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181710883648539