Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq11 123 6e-23
seq9 122 2e-22
seq8 120 7e-22
seq5 118 3e-21
seq4576 109 1e-18
seq6 102 2e-16
seq3 96.9 8e-15
seq2973 91.5 3e-13
seq7 89.7 1e-12
seq4 86.0 1e-11
>seq11
Length=25514024
Score = 123 bits (136), Expect = 6e-23
Identities = 151/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| || |||||||| || || |||||||| | ||||| || || || |||
Sbjct 16241638 CAGATCTTTGTGAAGACGCTCACCGGGAAGACGATCACCCTCGAAGTCGAGAGCTCGGAC 16241579
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| |||||||| || || ||||| ||| |||||| |||
Sbjct 16241578 ACCATCGACAACGTGAAGGCCAAGATTCAGGACAAGGAAGGCATTCCACCGGACCAGCAA 16241519
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
|| || ||||| || || |||||| | || || || | ||| | || || |||||| ||
Sbjct 16241518 AGGCTCATCTTTGCGGGCAAGCAGCTCGAGGACGGCCGTACTCTTGCAGACTACAACATC 16241459
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||| ||||| ||||||||||| ||
Sbjct 16241458 CAGAAGGAGTCCACTCTTCACCTCGT 16241433
Score = 86.0 bits (94), Expect = 1e-11
Identities = 130/185 (70%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
|| || || |||||||| | || ||||| || ||||| |||| || |||
Sbjct 15140913 ACGGGGAAGACGATCACCCTTGAGGTGGAGTCGTCGGACACGATCGACAACGTGAAGGCG 15140854
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| || || || || || || ||||||| || | || ||||||||||| |||
Sbjct 15140853 AAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCCTCATCTTCGCCGGGAAG 15140794
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
||| |||| || || | || | ||||| || ||| ||||||| |||||||| || |||
Sbjct 15140793 CAGCTGGAGGACGGCCGCACCCTCGCCGACTATAACATCCAGAAGGAGTCTACCCTCCAC 15140734
Query 206374 CTTGT 206378
|| ||
Sbjct 15140733 CTGGT 15140729
>seq9
Length=34148863
Score = 122 bits (134), Expect = 2e-22
Identities = 144/195 (74%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
|| || || || ||||| | || ||||| || || ||||| |||| ||||||
Sbjct 33549399 ACCGGGAAGACCATCACCCTTGAGGTGGAGAGCTCGGACACCATCGACAATGTAAAGGCC 33549340
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
|||||||| || || || || ||| |||||| ||||| || ||||| || || |||
Sbjct 33549339 AAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAGCAAAGGCTCATCTTTGCTGGCAAG 33549280
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
||| | || ||||| | || |||| ||||||||| | ||||| |||||||| ||||||
Sbjct 33549279 CAGCTTGAGGATGGCCGCACCCTGGCAGATTACAACATTCAGAAGGAGTCTACCCTTCAC 33549220
Query 206374 CTTGTTTTGAGACTT 206388
||||| ||||||||
Sbjct 33549219 CTTGTGCTGAGACTT 33549205
Score = 111 bits (122), Expect = 4e-19
Identities = 148/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| || ||||||||||| || || || || ||||| ||||| ||||| |||
Sbjct 33549192 CAGATCTTTGTTAAGACGCTCACAGGGAAGACCATTACCTTGGAGGTGGAGAGTTCGGAC 33549133
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | || || ||| |||||| || || || || || ||| ||||| ||
Sbjct 33549132 ACGATTGATAATGTCAAGGCAAAGATCCAGGACAAGGAGGGGATTCCACCGGATCAGCAG 33549073
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
|| || ||||| || || |||||| |||| || || | || |||| ||||||||| |
Sbjct 33549072 AGGCTGATCTTTGCTGGGAAGCAGCTGGAGGACGGGCGCACCCTGGCAGATTACAACATT 33549013
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||| || || || |||||||| ||
Sbjct 33549012 CAGAAGGAATCCACCCTTCACCTGGT 33548987
>seq8
Length=35439739
Score = 120 bits (132), Expect = 7e-22
Identities = 150/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || ||| || ||||| ||||| || ||||| |||| || || || ||||||
Sbjct 1222283 CAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCCTGGAGGTTGAGAGCTCTGAC 1222224
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| |||||| || || || || || ||| |||||| ||
Sbjct 1222223 ACGATCGACAACGTTAAGGCAAAGATCCAGGACAAGGAGGGTATTCCACCGGACCAGCAG 1222164
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
|| |||||||| || || |||||| | || || || | || ||||||||||||| |
Sbjct 1222163 AGGCTTATCTTTGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGGCCGATTACAATATT 1222104
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||| ||||| ||||||||||| ||
Sbjct 1222103 CAGAAGGAGTCCACTCTTCACCTGGT 1222078
Score = 105 bits (116), Expect = 2e-17
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || ||||| || || || || || ||||| || || || || |||||| ||||
Sbjct 4858012 AAGACTCTCACTGGGAAGACCATTACCTTGGAGGTCGAGAGCTCGGACACAATCGACAAC 4858071
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||| || || || || || || ||||||| ||||| || |||||
Sbjct 4858072 GTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAAAGGCTCATCTTT 4858131
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || || ||| | ||||| || | ||| | |||||||||||| ||||||| |||||
Sbjct 4858132 GCAGGCAAACAGCTCGAAGACGGCCGCACTCTTGCCGATTACAACATCCAGAAGGAGTCC 4858191
Query 206365 ACTCTTCACCTTGTTTTGAGACT 206387
|| || || || || |||| ||
Sbjct 4858192 ACGCTCCATCTGGTGCTGAGGCT 4858214
Score = 98.7 bits (108), Expect = 2e-15
Identities = 138/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| ||||| || || || |||||||| | || |||||| || ||||| | ||
Sbjct 26901020 AAGACGCTGACGGGGAAGACGATCACCCTCGAGGTGGAATCGTCGGACACGATTGACAAC 26900961
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| |||||||| || || || || || |||||| || | || ||||||
Sbjct 26900960 GTGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCGGATCAGCAGCGTCTCATCTTC 26900901
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|||||||||||| |||| ||||| | || | ||||| |||||| | ||||| |||||
Sbjct 26900900 GCCGGAAAGCAGCTGGAGGATGGCCGAACCCTCGCCGACTACAACATTCAGAAGGAGTCC 26900841
Query 206365 ACTCTTCACCTTGT 206378
|| || ||||| ||
Sbjct 26900840 ACGCTCCACCTCGT 26900827
Score = 89.7 bits (98), Expect = 1e-12
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || || || || || || ||||| | || ||||| || ||||| ||||
Sbjct 32122247 AAGACCCTTACGGGGAAGACAATCACCCTCGAGGTGGAGTCCTCGGACACGATCGATAAC 32122306
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||| || || || ||||| || ||||||| || || || ||||||
Sbjct 32122307 GTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCGCCGGACCAGCAGAGGCTCATCTTC 32122366
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||| |||||| | || || || | || | ||||| |||||| ||||||| |||||
Sbjct 32122367 GCCGGGAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCC 32122426
Query 206365 ACTCTTCACCTTGT 206378
|| || ||||| ||
Sbjct 32122427 ACCCTCCACCTCGT 32122440
>seq5
Length=29377369
Score = 118 bits (130), Expect = 3e-21
Identities = 158/215 (73%), Gaps = 5/215 (2%)
Strand=Plus/Plus
Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237
||||| |||||| ||||| ||||| || ||||| |||| ||||| || || ||||| |
Sbjct 457764 TTTTGTCAAAACCCTCACCGGAAACACCATCACCCTGGAGGTGGAGAGCTCAGACACGAT 457823
Query 206238 CG--AATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGA 206295
|| |||| ||||||||| ||| || || || || || || | ||||| || ||
Sbjct 457824 CGCCAATCT-TAAAGCAAA-GATCCATGACAAGGAGGGCATCTCACCGGATCAGCAGAGG 457881
Query 206296 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 206355
|| ||||| ||||| || ||| | || ||||| | ||| ||| ||| |||| | | |||
Sbjct 457882 CTCATCTTTGCCGGGAAACAGCTCGAGGATGGCCGCACTCTGGACGACTACAGCATTCAG 457941
Query 206356 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|| || || ||||||||||| ||| | |||| ||
Sbjct 457942 AAGGAATCCACTCTTCACCTGGTTCTCCGACTCCG 457976
Score = 95.1 bits (104), Expect = 3e-14
Identities = 145/207 (70%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243
||| || || || || ||||| | ||| | || || || || || ||||| ||||
Sbjct 457539 CAAGACCCTTACCGGCAAAACCACCACCCTCGAGGTCGAGAGCTCGGACACCATCGAGAA 457598
Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303
|| ||| ||||| ||||| || || || || |||| ||||| || |||||
Sbjct 457599 TGTGAAGGCTAAGATGCAAGACAAGGAGGGTATCCCTGTGGACCAGCAAAGGCTCATCTT 457658
Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363
||||| ||||| ||||||||||| | || || ||||||||| | |||| || || ||
Sbjct 457659 TGCCGGCAAGCAATTGGAAGATGGCCGCACCTTAGCCGATTACTCCATCCACAAGGAATC 457718
Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390
||| ||||| | || ||||||| ||
Sbjct 457719 TACCCTTCATTTGGTAATGAGACTCCG 457745
>seq4576
Length=2771
Score = 109 bits (120), Expect = 1e-18
Identities = 150/207 (72%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| || |||||||| |||||||| ||||| | || || ||||| || |||
Sbjct 2494 CAGATCTTTGTTAAGACGCTCACTGGAAAAACCATCACCCTCGAGGTCGAAAGCTCCGAC 2553
Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291
|| |||| || ||||| || ||| || || ||||| || || || ||| ||
Sbjct 2554 ACCATCGACAACGTCAAAGCTAA-GATCCAGGACAAAGAGGGCATCCCTCCCGACCAGCA 2612
Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351
||| || || ||||| || |||||| | || ||||| | || | || || |||||| |
Sbjct 2613 AAGGCTCATTTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTTGCGGACTACAACAT 2672
Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378
|||||||||||| || || ||||| ||
Sbjct 2673 CCAGAAAGAGTCGACGCTCCACCTCGT 2699
>seq6
Length=34899179
Score = 102 bits (112), Expect = 2e-16
Identities = 139/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| ||||| || || || |||||| |||| || || || || ||||| ||||
Sbjct 13154559 AAAACCCTCACGGGGAAGACCATCACTCTGGAGGTTGAGAGCTCGGACACTATCGACAAT 13154618
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| |||||| || || || || ||||| || ||| || || || |||||
Sbjct 13154619 GTGAAGGCAAAGATACAGGACAAGGAGGGAATCCCACCAGACCAACAGAGGCTAATCTTT 13154678
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || |||||| | || ||||| | || |||| || || ||| ||||||| || ||
Sbjct 13154679 GCGGGTAAGCAGCTCGAGGATGGGCGCACACTGGCAGACTATAACATCCAGAAGGAATCC 13154738
Query 206365 ACTCTTCACCTTGT 206378
||||||||||| ||
Sbjct 13154739 ACTCTTCACCTGGT 13154752
>seq3
Length=30470407
Score = 96.9 bits (106), Expect = 8e-15
Identities = 80/98 (82%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349
||||| | || || || |||||||| ||||||||||| | || ||||| |||||||||
Sbjct 29005125 CAAAGGTTGATTTTTGCGGGAAAGCAATTGGAAGATGGCCGCACCTTGGCTGATTACAAC 29005066
Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387
| ||||| ||||| |||||||||||||| ||||| ||
Sbjct 29005065 ATTCAGAAGGAGTCGACTCTTCACCTTGTCTTGAGGCT 29005028
Score = 84.2 bits (92), Expect = 5e-11
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 204755 AGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTT 204814
|| ||||| |||||||||||||| ||||| ||||| | || || |||||||| || |
Sbjct 29005028 AGCCTCAAGACAAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAATCAGCCAAGGTGCGG 29005087
Query 204815 CCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855
|||||||||| |||||||| || || || | || ||| ||
Sbjct 29005088 CCATCTTCCAATTGCTTTCCCGCAAAAATCAACCTTTGCTG 29005128
>seq2973
Length=40044
Score = 91.5 bits (100), Expect = 3e-13
Identities = 100/132 (76%), Gaps = 1/132 (1%)
Strand=Plus/Plus
Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGC 206306
|||||||| ||||||||| || || || || ||||||| ||||| || ||||||||
Sbjct 14813 AAAGCAAA-GATTCAAGACAAGGAGGGGATCCCGCCGGACCAGCAAAGGCTAATCTTCGC 14871
Query 206307 CGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366
||| || ||| |||| || || | || | || || |||||| | ||||| ||||| ||
Sbjct 14872 CGGGAAACAGCTGGAGGACGGCCGTACGCTTGCGGACTACAACATACAGAAGGAGTCGAC 14931
Query 206367 TCTTCACCTTGT 206378
||| ||||| ||
Sbjct 14932 TCTCCACCTAGT 14943
>seq7
Length=28617404
Score = 89.7 bits (98), Expect = 1e-12
Identities = 73/89 (82%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349
|| ||| | ||||| || || |||||| |||||||||| | || |||| |||||||||
Sbjct 27638179 CAGAGATTGATCTTTGCAGGTAAGCAGCTGGAAGATGGCCGAACCCTGGCTGATTACAAC 27638120
Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGT 206378
||||||||||||| ||||| ||||||||
Sbjct 27638119 ATCCAGAAAGAGTCAACTCTGCACCTTGT 27638091
>seq4
Length=30051516
Score = 86.0 bits (94), Expect = 1e-11
Identities = 79/100 (79%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349
|| ||| | || || || || ||||| ||||||||||| || ||| | || || ||||||
Sbjct 3354325 CAGAGATTGATTTTTGCTGGGAAGCAATTGGAAGATGGCAGAACTCTTGCAGACTACAAC 3354384
Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTC 206389
||||||||||||| || ||||| || ||| |||| ||||
Sbjct 3354385 ATCCAGAAAGAGTCGACACTTCATCTGGTTCTGAGGCTTC 3354424
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181710883648539
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