Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_025456.1
Length=46547
Score E
Sequences producing significant alignments: (Bits) Value
seq9 149 2e-31
seq1063 131 5e-26
seq1382 122 3e-23
seq4 107 6e-19
seq1024 86.0 2e-12
>seq9
Length=34148863
Score = 149 bits (164), Expect = 2e-31
Identities = 186/247 (75%), Gaps = 6/247 (2%)
Strand=Plus/Plus
Query 19831 TTACATGGGACGAGAGTGGGAACTTAGCTATCGA-CTAGGAATGAGGCCTTGGATTTGTG 19889
|||||| | | |||| |||||||| | || | || || ||| | ||||||||| ||
Sbjct 1506916 TTACATTGATCATGAGTATGAACTTAGTT-TCTATCTGGGTATGCGTCCTTGGATTGCTG 1506974
Query 19890 TTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGT 19948
|||| || || ||||| |||||||| || |||| || ||||| | ||||||| |||||
Sbjct 1506975 TTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATCTACCCTATTGGT 1507033
Query 19949 CAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGT-T 20007
|| || || ||||| |||| ||||||||| || || || | | ||||||| ||||| |
Sbjct 1507034 CAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTAGCAT-TTCAACTTCATGTAT 1507092
Query 20008 GGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGG 20067
||||| | || ||||| ||||| || ||||| | | | |||||| | ||||| ||||
Sbjct 1507093 TGTATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGG 1507152
Query 20068 TGTATTC 20074
|||||||
Sbjct 1507153 TGTATTC 1507159
>seq1063
Length=431445
Score = 131 bits (144), Expect = 5e-26
Identities = 238/344 (69%), Gaps = 31/344 (9%)
Strand=Plus/Minus
Query 19964 GATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAA 20023
|||| ||||||||| || || || ||||| ||| ||| |||| | ||||| | || |||
Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166
Query 20024 CATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCT--GGTGTATTCGGTGGGT 20081
|| ||||| || ||||| | || |||||| | ||||| ||| |||||||||||
Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 54111
Query 20082 CACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC-----GTGAGAC 20136
| ||| || | ||||| ||||| |||| |||| | ||||| | || |
Sbjct 54110 CCCTA----GTACTATGCATGGTTC-CTTG----GTCCACTCTTGTTTCATCAGGGAAAT 54060
Query 20137 TACTGAACAGGAAAGTCAGAACTATG--GTTACAAGTTTGGGCAAGAAGAAGAGACCT-- 20192
|||||| | ||| || | || || || || || |||| |||||||| |
Sbjct 54059 CACTGAAAACGAA--TCCGCGTTAGCAAGTGACTGATTCGGTAAAGAGGAAGAGACTTTA 54002
Query 20193 ----ATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCT 20248
| | || ||||| ||||||||||| || | || |||||||||||||| ||| |
Sbjct 54001 CAATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGT 53942
Query 20249 TTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCC 20292
|||||||| |||||| |||| |||||| | ||||| |||||
Sbjct 53941 TTCAACAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCC 53898
>seq1382
Length=172696
Score = 122 bits (134), Expect = 3e-23
Identities = 180/249 (72%), Gaps = 17/249 (7%)
Strand=Plus/Plus
Query 20022 AACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCT--GGTGTATTCGGTGG 20079
|||| ||||| || ||||| || || ||||| | ||| | ||| ||||||||||| ||
Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554
Query 20080 GTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC-GTGAGACTA 20138
|| ||||||||||| ||||| ||||| | || || || | | ||| | | || || |
Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCA 123613
Query 20139 CTGAACAGGAAAGTCAGAACTAT--GGTTACAAGTTTGGGCAAGAAGAAG----AGACCT 20192
||||| | ||| || | | || ||||||| || || |||||||||| |||| |
Sbjct 123614 CTGAAAACGAA--TCTGCATTAGCAGGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTT 123671
Query 20193 ATAACA-----TCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTC 20247
| || | | ||||| ||||||||||| || | || |||||| ||||||| |||
Sbjct 123672 ACAATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAG 123731
Query 20248 TTTCAACAA 20256
|||||||||
Sbjct 123732 TTTCAACAA 123740
>seq4
Length=30051516
Score = 107 bits (118), Expect = 6e-19
Identities = 120/159 (75%), Gaps = 6/159 (4%)
Strand=Plus/Plus
Query 20330 ACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGT 20389
|| ||||| || || || || |||||||| || ||||| ||| | | |||| | |||
Sbjct 1282771 ACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTCAGGGT 1282830
Query 20390 CGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCG----GGTTTGAGGT 20445
||||||||| |||| ||| ||| || ||||||||||| |||| | || | || ||
Sbjct 1282831 CGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATGGAAGT 1282888
Query 20446 GATGCATGAACGGAATGCTCATAACTTCCCACTTGACCT 20484
|| |||||||| ||||||||||||||||| | |||||
Sbjct 1282889 AATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927
>seq1024
Length=717246
Score = 86.0 bits (94), Expect = 2e-12
Identities = 73/90 (81%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 20395 CATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGA 20454
|||| | ||||||||||| || |||| |||||||| || || | || || ||||||||
Sbjct 156784 CATTAACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGA 156843
Query 20455 ACGGAATGCTCATAACTTCCCACTTGACCT 20484
||| |||||||| |||||||| || |||||
Sbjct 156844 ACGTAATGCTCACAACTTCCCTCTAGACCT 156873
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 148815970864422
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |