Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq9 149 2e-31 seq1063 131 5e-26 seq1382 122 3e-23 seq4 107 6e-19 seq1024 86.0 2e-12 >seq9 Length=34148863 Score = 149 bits (164), Expect = 2e-31 Identities = 186/247 (75%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 19831 TTACATGGGACGAGAGTGGGAACTTAGCTATCGA-CTAGGAATGAGGCCTTGGATTTGTG 19889 |||||| | | |||| |||||||| | || | || || ||| | ||||||||| || Sbjct 1506916 TTACATTGATCATGAGTATGAACTTAGTT-TCTATCTGGGTATGCGTCCTTGGATTGCTG 1506974 Query 19890 TTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGT 19948 |||| || || ||||| |||||||| || |||| || ||||| | ||||||| ||||| Sbjct 1506975 TTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATCTACCCTATTGGT 1507033 Query 19949 CAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGT-T 20007 || || || ||||| |||| ||||||||| || || || | | ||||||| ||||| | Sbjct 1507034 CAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTAGCAT-TTCAACTTCATGTAT 1507092 Query 20008 GGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGG 20067 ||||| | || ||||| ||||| || ||||| | | | |||||| | ||||| |||| Sbjct 1507093 TGTATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGG 1507152 Query 20068 TGTATTC 20074 ||||||| Sbjct 1507153 TGTATTC 1507159 >seq1063 Length=431445 Score = 131 bits (144), Expect = 5e-26 Identities = 238/344 (69%), Gaps = 31/344 (9%) Strand=Plus/Minus Query 19964 GATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAA 20023 |||| ||||||||| || || || ||||| ||| ||| |||| | ||||| | || ||| Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166 Query 20024 CATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCT--GGTGTATTCGGTGGGT 20081 || ||||| || ||||| | || |||||| | ||||| ||| ||||||||||| Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 54111 Query 20082 CACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC-----GTGAGAC 20136 | ||| || | ||||| ||||| |||| |||| | ||||| | || | Sbjct 54110 CCCTA----GTACTATGCATGGTTC-CTTG----GTCCACTCTTGTTTCATCAGGGAAAT 54060 Query 20137 TACTGAACAGGAAAGTCAGAACTATG--GTTACAAGTTTGGGCAAGAAGAAGAGACCT-- 20192 |||||| | ||| || | || || || || || |||| |||||||| | Sbjct 54059 CACTGAAAACGAA--TCCGCGTTAGCAAGTGACTGATTCGGTAAAGAGGAAGAGACTTTA 54002 Query 20193 ----ATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCT 20248 | | || ||||| ||||||||||| || | || |||||||||||||| ||| | Sbjct 54001 CAATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGT 53942 Query 20249 TTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCC 20292 |||||||| |||||| |||| |||||| | ||||| ||||| Sbjct 53941 TTCAACAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCC 53898 >seq1382 Length=172696 Score = 122 bits (134), Expect = 3e-23 Identities = 180/249 (72%), Gaps = 17/249 (7%) Strand=Plus/Plus Query 20022 AACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCT--GGTGTATTCGGTGG 20079 |||| ||||| || ||||| || || ||||| | ||| | ||| ||||||||||| || Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554 Query 20080 GTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC-GTGAGACTA 20138 || ||||||||||| ||||| ||||| | || || || | | ||| | | || || | Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCA 123613 Query 20139 CTGAACAGGAAAGTCAGAACTAT--GGTTACAAGTTTGGGCAAGAAGAAG----AGACCT 20192 ||||| | ||| || | | || ||||||| || || |||||||||| |||| | Sbjct 123614 CTGAAAACGAA--TCTGCATTAGCAGGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTT 123671 Query 20193 ATAACA-----TCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTC 20247 | || | | ||||| ||||||||||| || | || |||||| ||||||| ||| Sbjct 123672 ACAATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAG 123731 Query 20248 TTTCAACAA 20256 ||||||||| Sbjct 123732 TTTCAACAA 123740 >seq4 Length=30051516 Score = 107 bits (118), Expect = 6e-19 Identities = 120/159 (75%), Gaps = 6/159 (4%) Strand=Plus/Plus Query 20330 ACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGT 20389 || ||||| || || || || |||||||| || ||||| ||| | | |||| | ||| Sbjct 1282771 ACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTCAGGGT 1282830 Query 20390 CGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCG----GGTTTGAGGT 20445 ||||||||| |||| ||| ||| || ||||||||||| |||| | || | || || Sbjct 1282831 CGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATGGAAGT 1282888 Query 20446 GATGCATGAACGGAATGCTCATAACTTCCCACTTGACCT 20484 || |||||||| ||||||||||||||||| | ||||| Sbjct 1282889 AATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927 >seq1024 Length=717246 Score = 86.0 bits (94), Expect = 2e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 20395 CATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGA 20454 |||| | ||||||||||| || |||| |||||||| || || | || || |||||||| Sbjct 156784 CATTAACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGA 156843 Query 20455 ACGGAATGCTCATAACTTCCCACTTGACCT 20484 ||| |||||||| |||||||| || ||||| Sbjct 156844 ACGTAATGCTCACAACTTCCCTCTAGACCT 156873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148815970864422