Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq1382 105 2e-18 seq1063 96.9 1e-15 seq4 96.9 1e-15 seq1024 95.1 4e-15 >seq1382 Length=172696 Score = 105 bits (116), Expect = 2e-18 Identities = 176/248 (71%), Gaps = 15/248 (6%) Strand=Plus/Plus Query 29150 AACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCT--GGAGTGTTCGGTGG 29207 |||| ||||| || ||||| || || ||||| | || | ||| || || ||||| || Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554 Query 29208 CTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTGC-GTGAGACGA 29266 ||| ||||| ||||| ||||| ||||| | || || || | | ||| | | || || | Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCA 123613 Query 29267 CTGAAGACATCTCT-CAGAACTATGGTTACAAGTTTGGACAAGAAGAAG----AGACTTA 29321 ||||| || ||| || | | ||||||| || || |||||||||| ||||||| Sbjct 123614 CTGAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTA 123672 Query 29322 TAACA-----TCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCT 29376 || | | ||||| ||||| ||||| || | || |||||| ||||||||||| | Sbjct 123673 CAATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGT 123732 Query 29377 TTCAATAA 29384 ||||| || Sbjct 123733 TTCAACAA 123740 >seq1063 Length=431445 Score = 96.9 bits (106), Expect = 1e-15 Identities = 227/338 (67%), Gaps = 31/338 (9%) Strand=Plus/Minus Query 29098 ATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAAC 29157 |||||||| || || || || || ||| ||| |||| | || || | || ||||| ||| Sbjct 54219 ATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAACACAAC 54160 Query 29158 ATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCT--GGAGTGTTCGGTGGCTCGCTAT 29215 || || ||||| | || |||||| | || || ||| || || ||||| | ||| Sbjct 54159 ATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG-----CCCTA- 54106 Query 29216 TTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTGC-----GTGAGACGACTGA 29270 || | ||||| ||||| |||| |||| | ||||| | || | ||||| Sbjct 54105 ---GTACTATGCATGGTTC-CTTG----GTCCACTCTTGTTTCATCAGGGAAATCACTGA 54054 Query 29271 AGACATCTCTCAG--AACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTT------AT 29322 | || || | | | | || || || || |||| |||||||||| | Sbjct 54053 AAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAG 53996 Query 29323 AACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAAT 29382 | || ||||| ||||| ||||| || | || |||||||||||||||||| |||||| Sbjct 53995 AGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAAC 53936 Query 29383 AATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCC 29420 || |||||| |||| |||||| | ||||| ||||| Sbjct 53935 AACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCC 53898 >seq4 Length=30051516 Score = 96.9 bits (106), Expect = 1e-15 Identities = 112/150 (75%), Gaps = 6/150 (4%) Strand=Plus/Plus Query 29458 ACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGT 29517 || ||||| || || || || ||||| || || ||||| || | | |||| | ||| Sbjct 1282771 ACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTCAGGGT 1282830 Query 29518 CGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGA----AGT 29573 |||||||||||||| ||| |||| | ||||||| ||| | || || | || ||| Sbjct 1282831 CGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATGGAAGT 1282888 Query 29574 AATGCATGAGCGTAATGCTCATAACTTCCC 29603 ||| ||||| |||||||||||||||||||| Sbjct 1282889 AATACATGAACGTAATGCTCATAACTTCCC 1282918 >seq1024 Length=717246 Score = 95.1 bits (104), Expect = 4e-15 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 29523 CATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGA 29582 |||||| |||||||||||| | |||| || |||||||| || | |||||||||||||| Sbjct 156784 CATTAACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGA 156843 Query 29583 GCGTAATGCTCATAACTTCCCACTTGATCT 29612 ||||||||||| |||||||| || || || Sbjct 156844 ACGTAATGCTCACAACTTCCCTCTAGACCT 156873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146652957333614