Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_025464.1
Length=44147
Score E
Sequences producing significant alignments: (Bits) Value
seq9 134 4e-27
seq1382 131 5e-26
seq10 114 4e-21
seq4 114 4e-21
seq1024 89.7 1e-13
seq1042 84.2 6e-12
>seq9
Length=34148863
Score = 134 bits (148), Expect = 4e-27
Identities = 183/249 (73%), Gaps = 10/249 (4%)
Strand=Plus/Plus
Query 19050 TTACATGGGACGCGAGTGGGAACTTAGCTATCGA-CTAGGGATGCGCCCTTGGATTTGTG 19108
|||||| | | |||| |||||||| | || | || || ||||| ||||||||| ||
Sbjct 1506916 TTACATTGATCATGAGTATGAACTTAGTT-TCTATCTGGGTATGCGTCCTTGGATTGCTG 1506974
Query 19109 TTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTC 19168
|||| || |||||||||||||| || || |||| || ||| | |||| || ||||||
Sbjct 1506975 TTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTC 1507034
Query 19169 AAG---GTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATG- 19224
||| ||| || | || | ||||||||| || || | | | ||||||| ||||
Sbjct 1507035 AAGGAAGTTTCTCT---GATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGT 1507090
Query 19225 CTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCT 19284
||||||| | ||| ||||| |||||||| ||||| | | | |||||| | ||||| ||
Sbjct 1507091 ATTGTATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACT 1507150
Query 19285 GGTGTGTTC 19293
||||| |||
Sbjct 1507151 GGTGTATTC 1507159
>seq1382
Length=172696
Score = 131 bits (144), Expect = 5e-26
Identities = 237/340 (70%), Gaps = 19/340 (6%)
Strand=Plus/Plus
Query 19241 AACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCT--GGTGTGTTCGGCGG 19298
|||| |||||||| ||||| || || ||||| | ||| | ||| ||||| ||||||||
Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554
Query 19299 GTCACTATTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC-GTGAAACTA 19357
|| ||||| ||||| ||||| ||||| | || || || | | ||| | | ||||| |
Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCA 123613
Query 19358 CTGAAGAGGTATCT-CAGAACTATGGCTACAAGTTTGGGCAAGAAGAAG----AGACTTA 19412
||||| | | |||| || | | || |||| || || |||||||||| |||||||
Sbjct 123614 CTGAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTA 123672
Query 19413 TAACA-----TTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCC 19467
|| | |||| ||||||||||| ||||| | || | || |||| || ||
Sbjct 123673 CAATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGT 123732
Query 19468 TTCAACAATAGCCG----TTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCAT 19523
|||||||| || |||| |||| || ||||| |||||||| || |||| ||
Sbjct 123733 TTCAACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTAT 123792
Query 19524 TTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAAC 19563
||| | | || | || | ||||||||||| ||||||
Sbjct 123793 CTGGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAAC 123832
>seq10
Length=33665772
Score = 114 bits (126), Expect = 4e-21
Identities = 230/337 (68%), Gaps = 23/337 (7%)
Strand=Plus/Plus
Query 19188 TATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAA 19247
||||||||| || || |||||| ||||||| |||| ||||||||||||| ||||| ||
Sbjct 4332900 TATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAACACAA 4332959
Query 19248 CATCCTCATGCACCCGTTCCACATGCTCGGTGT--CGCTGGTGTGTTCGGCGGGTCACTA 19305
|||||| ||||| | || |||||| | ||||| | ||||||| ||||||
Sbjct 4332960 CATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGGC--------- 4333010
Query 19306 TTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGCGTGAAACTACTGAAGAG 19365
|||| | ||||| ||||| | || | || | | | | |||| |||||| |
Sbjct 4333011 CCTAGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTGAAAAC 4333070
Query 19366 GTATCTCAG--AACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACT------TATAACA 19417
| ||| | | | | | || || || |||| ||||||||| || | ||
Sbjct 4333071 GAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGCA 4333128
Query 19418 TTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAA-T 19476
|||| | ||||||||| ||||| | || | | | ||| || || |||||||| |
Sbjct 4333129 TTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAACAACT 4333188
Query 19477 AGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTG 19513
| | |||| ||||||||| |||||||| |||||||
Sbjct 4333189 CGAC-TTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224
>seq4
Length=30051516
Score = 114 bits (126), Expect = 4e-21
Identities = 118/153 (77%), Gaps = 6/153 (4%)
Strand=Plus/Plus
Query 19546 AGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAAT 19605
||||||||||| |||||| | ||||| || || || ||||| ||| | |||||| |
Sbjct 1282768 AGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTCAG 1282827
Query 19606 GGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCG----GCTTTGA 19661
|||||||||||| |||| ||| ||| || ||||||||||| | || | | | ||
Sbjct 1282828 GGTCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATGGA 1282885
Query 19662 GGTAATGCACGAACGTAATGCTCATAACTTCCC 19694
||||| || |||||||||||||||||||||||
Sbjct 1282886 AGTAATACATGAACGTAATGCTCATAACTTCCC 1282918
>seq1024
Length=717246
Score = 89.7 bits (98), Expect = 1e-13
Identities = 72/87 (83%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 19614 CATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGA 19673
|||| | ||||||||||| || |||| ||||||||||| || | || |||||||| ||
Sbjct 156784 CATTAACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGA 156843
Query 19674 ACGTAATGCTCATAACTTCCCACTTGA 19700
|||||||||||| |||||||| || ||
Sbjct 156844 ACGTAATGCTCACAACTTCCCTCTAGA 156870
>seq1042
Length=564079
Score = 84.2 bits (92), Expect = 6e-12
Identities = 78/99 (79%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 19188 TATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAA 19247
||||||| || || |||||| ||| ||| |||| |||||||||||||||| || ||
Sbjct 550837 TATGCCTCACGGAATCTCTGGTACTTTCCACTTCATGATTGTATTCCAGGCTGAGCACAA 550778
Query 19248 CATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGG 19286
|||||| |||||||| || ||||| | ||| | |||||
Sbjct 550777 CATCCTTATGCACCCATTTAACATGTTAGGTTTTGCTGG 550739
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 141136632885222
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |