Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq9 134 4e-27 seq1382 131 5e-26 seq10 114 4e-21 seq4 114 4e-21 seq1024 89.7 1e-13 seq1042 84.2 6e-12 >seq9 Length=34148863 Score = 134 bits (148), Expect = 4e-27 Identities = 183/249 (73%), Gaps = 10/249 (4%) Strand=Plus/Plus Query 19050 TTACATGGGACGCGAGTGGGAACTTAGCTATCGA-CTAGGGATGCGCCCTTGGATTTGTG 19108 |||||| | | |||| |||||||| | || | || || ||||| ||||||||| || Sbjct 1506916 TTACATTGATCATGAGTATGAACTTAGTT-TCTATCTGGGTATGCGTCCTTGGATTGCTG 1506974 Query 19109 TTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTC 19168 |||| || |||||||||||||| || || |||| || ||| | |||| || |||||| Sbjct 1506975 TTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTC 1507034 Query 19169 AAG---GTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATG- 19224 ||| ||| || | || | ||||||||| || || | | | ||||||| |||| Sbjct 1507035 AAGGAAGTTTCTCT---GATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGT 1507090 Query 19225 CTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCT 19284 ||||||| | ||| ||||| |||||||| ||||| | | | |||||| | ||||| || Sbjct 1507091 ATTGTATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACT 1507150 Query 19285 GGTGTGTTC 19293 ||||| ||| Sbjct 1507151 GGTGTATTC 1507159 >seq1382 Length=172696 Score = 131 bits (144), Expect = 5e-26 Identities = 237/340 (70%), Gaps = 19/340 (6%) Strand=Plus/Plus Query 19241 AACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCT--GGTGTGTTCGGCGG 19298 |||| |||||||| ||||| || || ||||| | ||| | ||| ||||| |||||||| Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554 Query 19299 GTCACTATTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC-GTGAAACTA 19357 || ||||| ||||| ||||| ||||| | || || || | | ||| | | ||||| | Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCA 123613 Query 19358 CTGAAGAGGTATCT-CAGAACTATGGCTACAAGTTTGGGCAAGAAGAAG----AGACTTA 19412 ||||| | | |||| || | | || |||| || || |||||||||| ||||||| Sbjct 123614 CTGAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTA 123672 Query 19413 TAACA-----TTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCC 19467 || | |||| ||||||||||| ||||| | || | || |||| || || Sbjct 123673 CAATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGT 123732 Query 19468 TTCAACAATAGCCG----TTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCAT 19523 |||||||| || |||| |||| || ||||| |||||||| || |||| || Sbjct 123733 TTCAACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTAT 123792 Query 19524 TTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAAC 19563 ||| | | || | || | ||||||||||| |||||| Sbjct 123793 CTGGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAAC 123832 >seq10 Length=33665772 Score = 114 bits (126), Expect = 4e-21 Identities = 230/337 (68%), Gaps = 23/337 (7%) Strand=Plus/Plus Query 19188 TATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAA 19247 ||||||||| || || |||||| ||||||| |||| ||||||||||||| ||||| || Sbjct 4332900 TATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAACACAA 4332959 Query 19248 CATCCTCATGCACCCGTTCCACATGCTCGGTGT--CGCTGGTGTGTTCGGCGGGTCACTA 19305 |||||| ||||| | || |||||| | ||||| | ||||||| |||||| Sbjct 4332960 CATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGGC--------- 4333010 Query 19306 TTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGCGTGAAACTACTGAAGAG 19365 |||| | ||||| ||||| | || | || | | | | |||| |||||| | Sbjct 4333011 CCTAGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTGAAAAC 4333070 Query 19366 GTATCTCAG--AACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACT------TATAACA 19417 | ||| | | | | | || || || |||| ||||||||| || | || Sbjct 4333071 GAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGCA 4333128 Query 19418 TTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAA-T 19476 |||| | ||||||||| ||||| | || | | | ||| || || |||||||| | Sbjct 4333129 TTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAACAACT 4333188 Query 19477 AGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTG 19513 | | |||| ||||||||| |||||||| ||||||| Sbjct 4333189 CGAC-TTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224 >seq4 Length=30051516 Score = 114 bits (126), Expect = 4e-21 Identities = 118/153 (77%), Gaps = 6/153 (4%) Strand=Plus/Plus Query 19546 AGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAAT 19605 ||||||||||| |||||| | ||||| || || || ||||| ||| | |||||| | Sbjct 1282768 AGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTCAG 1282827 Query 19606 GGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCG----GCTTTGA 19661 |||||||||||| |||| ||| ||| || ||||||||||| | || | | | || Sbjct 1282828 GGTCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATGGA 1282885 Query 19662 GGTAATGCACGAACGTAATGCTCATAACTTCCC 19694 ||||| || ||||||||||||||||||||||| Sbjct 1282886 AGTAATACATGAACGTAATGCTCATAACTTCCC 1282918 >seq1024 Length=717246 Score = 89.7 bits (98), Expect = 1e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 19614 CATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGA 19673 |||| | ||||||||||| || |||| ||||||||||| || | || |||||||| || Sbjct 156784 CATTAACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGA 156843 Query 19674 ACGTAATGCTCATAACTTCCCACTTGA 19700 |||||||||||| |||||||| || || Sbjct 156844 ACGTAATGCTCACAACTTCCCTCTAGA 156870 >seq1042 Length=564079 Score = 84.2 bits (92), Expect = 6e-12 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 19188 TATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAA 19247 ||||||| || || |||||| ||| ||| |||| |||||||||||||||| || || Sbjct 550837 TATGCCTCACGGAATCTCTGGTACTTTCCACTTCATGATTGTATTCCAGGCTGAGCACAA 550778 Query 19248 CATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGG 19286 |||||| |||||||| || ||||| | ||| | ||||| Sbjct 550777 CATCCTTATGCACCCATTTAACATGTTAGGTTTTGCTGG 550739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141136632885222