Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq9 143 3e-29 seq1063 138 1e-27 seq1035 138 1e-27 seq10 129 7e-25 seq1382 122 1e-22 seq1042 114 1e-20 seq4 105 8e-18 seq6 86.0 7e-12 seq2913 84.2 3e-11 >seq9 Length=34148863 Score = 143 bits (158), Expect = 3e-29 Identities = 158/208 (76%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 158039 GGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTGCAGTA 158098 |||||||| || ||||| ||| |||||||| ||||| || || || || | ||| || Sbjct 1506953 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 1507012 Query 158099 TTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCT 158158 ||| | |||| ||| | |||||||| |||||| |||| ||||||| | || || ||| Sbjct 1507013 TTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCT 1507072 Query 158159 GGTACTTTTAACTACATGC-TTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTT 158217 | | ||| |||| |||| ||||||| | ||||||||||||||||||||||| | | | Sbjct 1507073 AGCA-TTTCAACTTCATGTATTGTATTTCTGGCAGAACACAACATCCTTATGCATCTGGT 1507131 Query 158218 CCATATGCTCGGTGTTGCTGGGGTATTC 158245 || ||| | ||||| |||| |||||| Sbjct 1507132 TCACATGTTAGGTGTAACTGGTGTATTC 1507159 >seq1063 Length=431445 Score = 138 bits (152), Expect = 1e-27 Identities = 238/341 (70%), Gaps = 21/341 (6%) Strand=Plus/Minus Query 158135 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 158194 |||| ||||||| |||| || ||||||||||| ||| |||| ||||||| | |||||| Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166 Query 158195 CACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTG--CTGGGGTATTCGGTGGAT 158252 ||||||||||||||||| | || || ||| | ||||| | |||| |||||||| Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 54111 Query 158253 CTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTG 158312 | || | |||||||||| | || || | || | | |||| |||| Sbjct 54110 CCCT----AGTACTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTG 54055 Query 158313 AAACAGAGTCACAG--AACTACGGTTATAAGTTCGGTCAAGAAGAAGAGAC-CTACAA-- 158367 ||| || || | | | | || | |||||| |||| |||||||| ||||| Sbjct 54054 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 53997 Query 158368 ---CATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAA 158424 || || || || ||||| || || | || |||||||||||||| ||| ||||| Sbjct 53996 GAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAA 53937 Query 158425 CAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTG 158465 |||||| ||||| || || |||||| | ||||| ||||||| Sbjct 53936 CAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896 >seq1035 Length=594915 Score = 138 bits (152), Expect = 1e-27 Identities = 343/513 (67%), Gaps = 57/513 (11%) Strand=Plus/Plus Query 159801 CGTATTCCT-TATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGG 159859 |||||| || | | |||| || |||||| ||| |||| ||| |||||| || | Sbjct 236951 CGTATTTCTCTCTTTATCTACAGGGTCAATCT----GGTTT----CACATAGTTTTGGTG 237002 Query 159860 TAGCAGCAATCTTTAGAT---TCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCA 159916 ||||||| || ||| ||| |||| | |||| | | | | || ||||| | | Sbjct 237003 TAGCAGCTATATTTCGATGAATCCTCTGATTCCAACGGTGGA---ATAATTGGACGTTGA 237059 Query 159917 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATCC 159976 |||| || |||||||||||||| || || |||| | || ||| | || || || | Sbjct 237060 ACCCTTTGAATATGATGGGAGTTTA-GGAGTATTAGGCGCTGCTCTGCTATGCGCTATTC 237118 Query 159977 ATGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACAT----TT 160032 ||||| ||||| | ||||| || || |||||||| | ||||| |||| || Sbjct 237119 ATGGT----CTGTATAAAACACTTTATTCGAAGATGGTAACGGTGCAAATACATACTGTT 237174 Query 160033 AAGGCGTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTC 160092 || ||| | || ||||||| |||||||||||||| ||||||||||| ||||| || Sbjct 237175 CGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTAACCGTTTT 237234 Query 160093 TGGTCGCAGATC-----TTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCA 160147 ||||| || ||| || || ||||| ||||| || || || |||| | | Sbjct 237235 TGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGGC--------CTTA 237286 Query 160148 TGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATT--GGCATTA--TTGGTCTT 160203 |||| ||||| | || | ||| |||||| ||||| || | || | ||||| Sbjct 237287 TGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGGTAGTAAGTCGGTCTG 237346 Query 160204 GCTTTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCT 160263 ||| | || || ||||| || || ||||| || | |||| |||||||| Sbjct 237347 GCTCTGAATCTACGTGCCTATGACTTCGT--TTCCCG---TTAG-------GAAGATCCG 237394 Query 160264 GAATTTGAGACCTT----CTACACCAAGAACAT 160292 ||||| || || || |||||||||||| || Sbjct 237395 GAATTGGATACTTTATACCTACACCAAGAATAT 237427 >seq10 Length=33665772 Score = 129 bits (142), Expect = 7e-25 Identities = 236/341 (69%), Gaps = 21/341 (6%) Strand=Plus/Plus Query 158135 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 158194 |||| ||||||| | || || ||||||||||| |||| |||| |||||||||| |||||| Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954 Query 158195 CACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTG--CTGGGGTATTCGGTGGAT 158252 ||||||||||||||||| | || || ||| | ||||| | |||| |||||||| Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 4333009 Query 158253 CTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTG 158312 | || | |||||||||| | || | || | || | | |||| |||| Sbjct 4333010 CCCT----AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065 Query 158313 AAACAGAGTCACAG--AACTACGGTTATAAGTTCGGTCAAGAAGAAGAGAC-CTACAA-- 158367 ||| || || | | | | || | |||||| |||| |||||||| ||||| Sbjct 4333066 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 4333123 Query 158368 ---CATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAA 158424 ||| || | || ||||| || || | || |||| || |||||| ||| ||||| Sbjct 4333124 GAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAA 4333183 Query 158425 CAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTG 158465 |||||| ||| | || |||||| | ||||| ||||||| Sbjct 4333184 CAACTCGACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224 >seq1382 Length=172696 Score = 122 bits (134), Expect = 1e-22 Identities = 238/345 (69%), Gaps = 19/345 (6%) Strand=Plus/Plus Query 158193 AACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCT--GGGGTATTCGGTGG 158250 ||||||||||||||||||| || || | ||| | ||| | ||| || |||||||| || Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554 Query 158251 ATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGA 158309 || || ||| |||||||||||| | || || || | | | || | ||||| | Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCA 123613 Query 158310 CTGAAACAGAGTCA-CAGAACTACGGTTATAAGTTCGGTCAAGAAGAAG----AGACCTA 158364 |||||| || || || | | ||||| | |||||||||||||||| |||| || Sbjct 123614 CTGAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTA 123672 Query 158365 CAACA-----TCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCA 158419 ||| | | || || || ||||| || || | || |||||| ||||||| ||| Sbjct 123673 CAATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGT 123732 Query 158420 TTCAACAACTCCCG----TTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCAT 158475 ||||||||||| || ||| | || ||| | || || ||||| ||| | || || Sbjct 123733 TTCAACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTAT 123792 Query 158476 CTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAA 158520 |||| |||| || | || | |||||||| |||||||| || Sbjct 123793 CTGGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 >seq1042 Length=564079 Score = 114 bits (126), Expect = 1e-20 Identities = 99/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 158117 GGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATG 158176 |||||||| | | || |||| |||||||| || |||||||||||||| ||| |||| Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801 Query 158177 CTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCT 158236 |||||||||| || || |||||||||||||||||||| || | ||| | ||| ||||| Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCT 550741 Query 158237 GGG 158239 ||| Sbjct 550740 GGG 550738 >seq4 Length=30051516 Score = 105 bits (116), Expect = 8e-18 Identities = 114/150 (76%), Gaps = 6/150 (4%) Strand=Plus/Plus Query 158501 ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 158560 |||||||| |||||||| || |||||||| |||||||| ||| | |||| |||||||| Sbjct 1282771 ACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTCAGGGT 1282830 Query 158561 CGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGT----ATGGAAGT 158616 ||||| | || || ||| ||| | | || || ||| ||||||| |||||||| Sbjct 1282831 CGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATGGAAGT 1282888 Query 158617 TATGCATGAGCGTAACGCACACAACTTCCC 158646 || ||||| ||||| || || |||||||| Sbjct 1282889 AATACATGAACGTAATGCTCATAACTTCCC 1282918 >seq6 Length=34899179 Score = 86.0 bits (94), Expect = 7e-12 Identities = 99/130 (76%), Gaps = 4/130 (3%) Strand=Plus/Minus Query 159596 ATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAAC 159655 ||||| | | ||||| ||||||||||| | ||||| || || || | |||||||| Sbjct 26461273 ATTCTTTGTTGCTACTATGGGGTCCTGAAGCACAAGGAGATTTT--ACTC-GGTGCCAAT 26461217 Query 159656 TTGGAGGGATTTGGTCCTTTGTTGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGC 159715 | || || | ||| | |||||||||||||| ||||| ||||| || ||||| ||||| Sbjct 26461216 TAGGCGGTCTGTGGACTTTTGTTGCTCTCCATGGTGCTTTCGCACTAATAGG-CTTATGT 26461158 Query 159716 TACGGCAATT 159725 |||| ||||| Sbjct 26461157 TACGTCAATT 26461148 >seq2913 Length=44711 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 159784 ATTGCTGTTTTTGTCAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTT 159843 |||||||||||||| |||||| | || |||||||||||||| ||| ||||||||| Sbjct 3928 ATTGCTGTTTTTGTTTCAGTATTCTTGATTTATCCACTGGGTCAATCTGGTTGGTTCTTT 3869 Query 159844 GCACCTAGTTTCGGGGTAGCA 159864 ||||||||||| || ||| || Sbjct 3868 GCACCTAGTTTTGGCGTACCA 3848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572972005234800