Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_026923.1
Length=179110
Score E
Sequences producing significant alignments: (Bits) Value
seq9 143 3e-29
seq1063 138 1e-27
seq1035 138 1e-27
seq10 129 7e-25
seq1382 122 1e-22
seq1042 114 1e-20
seq4 105 8e-18
seq6 86.0 7e-12
seq2913 84.2 3e-11
>seq9
Length=34148863
Score = 143 bits (158), Expect = 3e-29
Identities = 158/208 (76%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 158039 GGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTGCAGTA 158098
|||||||| || ||||| ||| |||||||| ||||| || || || || | ||| ||
Sbjct 1506953 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 1507012
Query 158099 TTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCT 158158
||| | |||| ||| | |||||||| |||||| |||| ||||||| | || || |||
Sbjct 1507013 TTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCT 1507072
Query 158159 GGTACTTTTAACTACATGC-TTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTT 158217
| | ||| |||| |||| ||||||| | ||||||||||||||||||||||| | | |
Sbjct 1507073 AGCA-TTTCAACTTCATGTATTGTATTTCTGGCAGAACACAACATCCTTATGCATCTGGT 1507131
Query 158218 CCATATGCTCGGTGTTGCTGGGGTATTC 158245
|| ||| | ||||| |||| ||||||
Sbjct 1507132 TCACATGTTAGGTGTAACTGGTGTATTC 1507159
>seq1063
Length=431445
Score = 138 bits (152), Expect = 1e-27
Identities = 238/341 (70%), Gaps = 21/341 (6%)
Strand=Plus/Minus
Query 158135 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 158194
|||| ||||||| |||| || ||||||||||| ||| |||| ||||||| | ||||||
Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166
Query 158195 CACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTG--CTGGGGTATTCGGTGGAT 158252
||||||||||||||||| | || || ||| | ||||| | |||| ||||||||
Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 54111
Query 158253 CTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTG 158312
| || | |||||||||| | || || | || | | |||| ||||
Sbjct 54110 CCCT----AGTACTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTG 54055
Query 158313 AAACAGAGTCACAG--AACTACGGTTATAAGTTCGGTCAAGAAGAAGAGAC-CTACAA-- 158367
||| || || | | | | || | |||||| |||| |||||||| |||||
Sbjct 54054 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 53997
Query 158368 ---CATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAA 158424
|| || || || ||||| || || | || |||||||||||||| ||| |||||
Sbjct 53996 GAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAA 53937
Query 158425 CAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTG 158465
|||||| ||||| || || |||||| | ||||| |||||||
Sbjct 53936 CAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896
>seq1035
Length=594915
Score = 138 bits (152), Expect = 1e-27
Identities = 343/513 (67%), Gaps = 57/513 (11%)
Strand=Plus/Plus
Query 159801 CGTATTCCT-TATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGG 159859
|||||| || | | |||| || |||||| ||| |||| ||| |||||| || |
Sbjct 236951 CGTATTTCTCTCTTTATCTACAGGGTCAATCT----GGTTT----CACATAGTTTTGGTG 237002
Query 159860 TAGCAGCAATCTTTAGAT---TCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCA 159916
||||||| || ||| ||| |||| | |||| | | | | || ||||| | |
Sbjct 237003 TAGCAGCTATATTTCGATGAATCCTCTGATTCCAACGGTGGA---ATAATTGGACGTTGA 237059
Query 159917 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATCC 159976
|||| || |||||||||||||| || || |||| | || ||| | || || || |
Sbjct 237060 ACCCTTTGAATATGATGGGAGTTTA-GGAGTATTAGGCGCTGCTCTGCTATGCGCTATTC 237118
Query 159977 ATGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACAT----TT 160032
||||| ||||| | ||||| || || |||||||| | ||||| |||| ||
Sbjct 237119 ATGGT----CTGTATAAAACACTTTATTCGAAGATGGTAACGGTGCAAATACATACTGTT 237174
Query 160033 AAGGCGTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTC 160092
|| ||| | || ||||||| |||||||||||||| ||||||||||| ||||| ||
Sbjct 237175 CGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTAACCGTTTT 237234
Query 160093 TGGTCGCAGATC-----TTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCA 160147
||||| || ||| || || ||||| ||||| || || || |||| | |
Sbjct 237235 TGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGGC--------CTTA 237286
Query 160148 TGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATT--GGCATTA--TTGGTCTT 160203
|||| ||||| | || | ||| |||||| ||||| || | || | |||||
Sbjct 237287 TGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGGTAGTAAGTCGGTCTG 237346
Query 160204 GCTTTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCT 160263
||| | || || ||||| || || ||||| || | |||| ||||||||
Sbjct 237347 GCTCTGAATCTACGTGCCTATGACTTCGT--TTCCCG---TTAG-------GAAGATCCG 237394
Query 160264 GAATTTGAGACCTT----CTACACCAAGAACAT 160292
||||| || || || |||||||||||| ||
Sbjct 237395 GAATTGGATACTTTATACCTACACCAAGAATAT 237427
>seq10
Length=33665772
Score = 129 bits (142), Expect = 7e-25
Identities = 236/341 (69%), Gaps = 21/341 (6%)
Strand=Plus/Plus
Query 158135 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 158194
|||| ||||||| | || || ||||||||||| |||| |||| |||||||||| ||||||
Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954
Query 158195 CACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTG--CTGGGGTATTCGGTGGAT 158252
||||||||||||||||| | || || ||| | ||||| | |||| ||||||||
Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 4333009
Query 158253 CTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTG 158312
| || | |||||||||| | || | || | || | | |||| ||||
Sbjct 4333010 CCCT----AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065
Query 158313 AAACAGAGTCACAG--AACTACGGTTATAAGTTCGGTCAAGAAGAAGAGAC-CTACAA-- 158367
||| || || | | | | || | |||||| |||| |||||||| |||||
Sbjct 4333066 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 4333123
Query 158368 ---CATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAA 158424
||| || | || ||||| || || | || |||| || |||||| ||| |||||
Sbjct 4333124 GAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAA 4333183
Query 158425 CAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTG 158465
|||||| ||| | || |||||| | ||||| |||||||
Sbjct 4333184 CAACTCGACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224
>seq1382
Length=172696
Score = 122 bits (134), Expect = 1e-22
Identities = 238/345 (69%), Gaps = 19/345 (6%)
Strand=Plus/Plus
Query 158193 AACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCT--GGGGTATTCGGTGG 158250
||||||||||||||||||| || || | ||| | ||| | ||| || |||||||| ||
Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554
Query 158251 ATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGA 158309
|| || ||| |||||||||||| | || || || | | | || | ||||| |
Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCA 123613
Query 158310 CTGAAACAGAGTCA-CAGAACTACGGTTATAAGTTCGGTCAAGAAGAAG----AGACCTA 158364
|||||| || || || | | ||||| | |||||||||||||||| |||| ||
Sbjct 123614 CTGAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTA 123672
Query 158365 CAACA-----TCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCA 158419
||| | | || || || ||||| || || | || |||||| ||||||| |||
Sbjct 123673 CAATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGT 123732
Query 158420 TTCAACAACTCCCG----TTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCAT 158475
||||||||||| || ||| | || ||| | || || ||||| ||| | || ||
Sbjct 123733 TTCAACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTAT 123792
Query 158476 CTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAA 158520
|||| |||| || | || | |||||||| |||||||| ||
Sbjct 123793 CTGGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837
>seq1042
Length=564079
Score = 114 bits (126), Expect = 1e-20
Identities = 99/123 (80%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 158117 GGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATG 158176
|||||||| | | || |||| |||||||| || |||||||||||||| ||| ||||
Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801
Query 158177 CTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCT 158236
|||||||||| || || |||||||||||||||||||| || | ||| | ||| |||||
Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCT 550741
Query 158237 GGG 158239
|||
Sbjct 550740 GGG 550738
>seq4
Length=30051516
Score = 105 bits (116), Expect = 8e-18
Identities = 114/150 (76%), Gaps = 6/150 (4%)
Strand=Plus/Plus
Query 158501 ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 158560
|||||||| |||||||| || |||||||| |||||||| ||| | |||| ||||||||
Sbjct 1282771 ACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTCAGGGT 1282830
Query 158561 CGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGT----ATGGAAGT 158616
||||| | || || ||| ||| | | || || ||| ||||||| ||||||||
Sbjct 1282831 CGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATGGAAGT 1282888
Query 158617 TATGCATGAGCGTAACGCACACAACTTCCC 158646
|| ||||| ||||| || || ||||||||
Sbjct 1282889 AATACATGAACGTAATGCTCATAACTTCCC 1282918
>seq6
Length=34899179
Score = 86.0 bits (94), Expect = 7e-12
Identities = 99/130 (76%), Gaps = 4/130 (3%)
Strand=Plus/Minus
Query 159596 ATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAAC 159655
||||| | | ||||| ||||||||||| | ||||| || || || | ||||||||
Sbjct 26461273 ATTCTTTGTTGCTACTATGGGGTCCTGAAGCACAAGGAGATTTT--ACTC-GGTGCCAAT 26461217
Query 159656 TTGGAGGGATTTGGTCCTTTGTTGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGC 159715
| || || | ||| | |||||||||||||| ||||| ||||| || ||||| |||||
Sbjct 26461216 TAGGCGGTCTGTGGACTTTTGTTGCTCTCCATGGTGCTTTCGCACTAATAGG-CTTATGT 26461158
Query 159716 TACGGCAATT 159725
|||| |||||
Sbjct 26461157 TACGTCAATT 26461148
>seq2913
Length=44711
Score = 84.2 bits (92), Expect = 3e-11
Identities = 67/81 (83%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 159784 ATTGCTGTTTTTGTCAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTT 159843
|||||||||||||| |||||| | || |||||||||||||| ||| |||||||||
Sbjct 3928 ATTGCTGTTTTTGTTTCAGTATTCTTGATTTATCCACTGGGTCAATCTGGTTGGTTCTTT 3869
Query 159844 GCACCTAGTTTCGGGGTAGCA 159864
||||||||||| || ||| ||
Sbjct 3868 GCACCTAGTTTTGGCGTACCA 3848
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 572972005234800
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