Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_026924.1
Length=174885
Score E
Sequences producing significant alignments: (Bits) Value
seq1382 156 5e-33
seq9 143 3e-29
seq1063 140 4e-28
seq10 129 7e-25
seq4 116 4e-21
seq1035 107 2e-18
seq1042 105 7e-18
seq6 82.4 9e-11
>seq1382
Length=172696
Score = 156 bits (172), Expect = 5e-33
Identities = 248/346 (72%), Gaps = 21/346 (6%)
Strand=Plus/Plus
Query 160477 AACACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCT--GGGGTATTCGGTGG 160534
||||||| |||||||||||||| || ||||| | || | ||| || |||||||| ||
Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554
Query 160535 ATCTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGA 160593
|| | ||| ||||||||| || | || || || | | | || | ||||| |
Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCA 123613
Query 160594 CTGAAACAGAGTCA-CAGAACTACGGTTATAAGTTCGGTCAAGA----GGAAGAGACCTA 160648
|||||| || || || | | ||||| | ||||||||||| ||||||||| ||
Sbjct 123614 CTGAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTA 123672
Query 160649 CAACA-----TCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCA 160703
||| | | || || || |||||||| || | || |||||| ||||||||||
Sbjct 123673 CAATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGT 123732
Query 160704 TTCAACAACTCCCGTTCACTTC---ACTTC--TTCCTGGCAGCATGGCCTGTAGTCGGAA 160758
||||||||||| || | ||||| || | ||| ||||||| ||||| || | || |
Sbjct 123733 TTCAACAACTCTCGCT-ACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTA 123791
Query 160759 TCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAA 160804
||||| |||| ||| | ||| ||||||||||||| |||||||||||
Sbjct 123792 TCTGGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837
>seq9
Length=34148863
Score = 143 bits (158), Expect = 3e-29
Identities = 158/208 (76%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 160323 GGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTA 160382
|||||||| || ||||| ||| |||||||| ||||| || || || || |||||||
Sbjct 1506953 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 1507012
Query 160383 TTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCT 160442
||| | | || ||| | |||||||| |||||| |||| ||||||| | || || |||
Sbjct 1507013 TTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCT 1507072
Query 160443 GGTACTTTTAACTACATGC-TTGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTT 160501
| | ||| |||| |||| ||||||| | ||||||||||| ||||||||||||| | |
Sbjct 1507073 AGCA-TTTCAACTTCATGTATTGTATTTCTGGCAGAACACAACATCCTTATGCATCTGGT 1507131
Query 160502 CCACATGCTCGGCGTTGCTGGGGTATTC 160529
|||||| | || || |||| ||||||
Sbjct 1507132 TCACATGTTAGGTGTAACTGGTGTATTC 1507159
>seq1063
Length=431445
Score = 140 bits (154), Expect = 4e-28
Identities = 242/345 (70%), Gaps = 29/345 (8%)
Strand=Plus/Minus
Query 160419 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 160478
|||| ||||||| |||| || ||||||||||| ||| |||| ||||||| | ||||||
Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166
Query 160479 CACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTG--CTGGGGTATTCGGTGGAT 160536
||||| ||||||||||||| || |||||| | || || | |||| ||||||||
Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----C 54110
Query 160537 CTTTGTTCTCTGCTATG----CACGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACG 160592
| | || || ||| ||| | || ||| || ||| ||| | ||||
Sbjct 54109 CCTAGTACTATGC-ATGGTTCCTTGGTCCACTC-TTGTTTCATCA-------GGGAAATC 54059
Query 160593 ACTGAAACAGAGTCACAG--AACTACGGTTATAAGTTCGGTCAAGAGGAAGAGAC-CTAC 160649
||||||| || || | | | | || | |||||| ||||||||||||| |||
Sbjct 54058 ACTGAAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTAC 54001
Query 160650 AA-----CATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCAT 160704
|| || || || || |||||||| || | || ||||||||||||||||| |
Sbjct 54000 AATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTT 53941
Query 160705 TCAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTG 160749
|||||||||| ||||| | || |||||| |||| || |||||||
Sbjct 53940 TCAACAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896
>seq10
Length=33665772
Score = 129 bits (142), Expect = 7e-25
Identities = 236/341 (69%), Gaps = 21/341 (6%)
Strand=Plus/Plus
Query 160419 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 160478
|||| ||||||| | || || ||||||||||| |||| |||| |||||||||| ||||||
Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954
Query 160479 CACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTG--CTGGGGTATTCGGTGGAT 160536
||||| ||||||||||||| || |||||| | || || | |||| ||||||||
Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----C 4333010
Query 160537 CTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTG 160596
| | | | ||||||| || | || | || | || | | |||| ||||
Sbjct 4333011 CCTAG-----TACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065
Query 160597 AAACAGAGTCACAG--AACTACGGTTATAAGTTCGGTCAAGAGGAAGAGAC-CTACAA-- 160651
||| || || | | | | || | |||||| ||||||||||||| |||||
Sbjct 4333066 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 4333123
Query 160652 ---CATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAA 160708
||| || | || |||||||| || | || |||| || ||||||||| |||||
Sbjct 4333124 GAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAA 4333183
Query 160709 CAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTG 160749
|||||| ||| || |||||| |||| || |||||||
Sbjct 4333184 CAACTCGACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224
>seq4
Length=30051516
Score = 116 bits (128), Expect = 4e-21
Identities = 128/169 (76%), Gaps = 6/169 (4%)
Strand=Plus/Plus
Query 160775 TGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGA 160834
|||| ||||||||||||| |||||||| || |||||||| |||||||| ||| | | ||
Sbjct 1282761 TGGTATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGA 1282820
Query 160835 TGGTCAAGGTCGTGTACTGAACACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGT-- 160892
|||| |||||||| | || || ||| || | | ||||||||| |||||||
Sbjct 1282821 CAGTCAGGGTCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTAT 1282878
Query 160893 --ATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCT 160939
|||||||| || ||||| ||||| || || |||||||| | |||||
Sbjct 1282879 GGATGGAAGTAATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927
>seq1035
Length=594915
Score = 107 bits (118), Expect = 2e-18
Identities = 265/396 (67%), Gaps = 32/396 (8%)
Strand=Plus/Plus
Query 162162 TTTGGGGTGGCAGCAATCTTTAGAT---TCCTGTTGTTTCTTCAAGGATTCCATAACTGG 162218
||||| || ||||| || ||| ||| |||| | | ||| ||| | | |||| |||
Sbjct 236996 TTTGGTGTAGCAGCTATATTTCGATGAATCCTCT-GATTC--CAACGGTGGAATAATTGG 237052
Query 162219 ACCCTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCT 162278
|| ||||||| || |||||||||||||| || || |||| | || || ||||
Sbjct 237053 ACGTTGAACCCTTTGAATATGATGGGAGTTTA-GGAGTATTAGGCGCTGCTCTGCTATGC 237111
Query 162279 GCTATTCACGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACC 162338
|||||||| || | || |||| || |||| ||| ||||| | ||||| ||
Sbjct 237112 GCTATTCATGGTCT----GTATAAAACACTTTATTCGAAGATGGTAACGGTGCAAATACA 237167
Query 162339 T----TTAAGGCGTTTGATTCGACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAA 162394
| || || ||| | | || || | |||||||||||||| ||||||||||| ||
Sbjct 237168 TACTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTAA 237227
Query 162395 CCGCTTCTGGTCGCAGATC-----TTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCAT 162449
||| || ||||| || ||| || || |||| ||||| || || || ||||
Sbjct 237228 CCGTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGGC----- 237282
Query 162450 TTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATT--GGCATTA--T 162505
| ||||| ||||| | || | ||| |||||| ||||| || | || |
Sbjct 237283 ---CTTATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGGTAGTAAGT 237339
Query 162506 TGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGT 162541
||||| ||||| || || ||||| || || |||||
Sbjct 237340 CGGTCTGGCTCTGAATCTACGTGCCTATGACTTCGT 237375
>seq1042
Length=564079
Score = 105 bits (116), Expect = 7e-18
Identities = 97/123 (79%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 160401 GGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATG 160460
|||||||| | | || |||| |||||||| || |||||||||||||| ||| ||||
Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801
Query 160461 CTTGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCT 160520
|||||||||| || || ||||| ||||||||||| || || ||||| | || |||||
Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCT 550741
Query 160521 GGG 160523
|||
Sbjct 550740 GGG 550738
>seq6
Length=34899179
Score = 82.4 bits (90), Expect = 9e-11
Identities = 101/136 (74%), Gaps = 4/136 (3%)
Strand=Plus/Minus
Query 161905 ATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCAAC 161964
||||| | | || || ||||||||||| || ||||| ||||| || || ||||
Sbjct 26461273 ATTCTTTGTTGCTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGGTG---CCAAT 26461217
Query 161965 TTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGC 162024
| || || || |||| |||||| || ||||||||||| ||||| ||||| || || |||
Sbjct 26461216 TAGGCGGTCTGTGGACTTTTGTTGCTCTCCATGGTGCTTTCGCACTAATAGGCTT-ATGT 26461158
Query 162025 TCCGTCAGTTTGAACT 162040
| ||||| || ||||
Sbjct 26461157 TACGTCAATTCTAACT 26461142
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 559453232005800
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