Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq1382 156 5e-33 seq9 143 3e-29 seq1063 140 4e-28 seq10 129 7e-25 seq4 116 4e-21 seq1035 107 2e-18 seq1042 105 7e-18 seq6 82.4 9e-11 >seq1382 Length=172696 Score = 156 bits (172), Expect = 5e-33 Identities = 248/346 (72%), Gaps = 21/346 (6%) Strand=Plus/Plus Query 160477 AACACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCT--GGGGTATTCGGTGG 160534 ||||||| |||||||||||||| || ||||| | || | ||| || |||||||| || Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554 Query 160535 ATCTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGA 160593 || | ||| ||||||||| || | || || || | | | || | ||||| | Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCA 123613 Query 160594 CTGAAACAGAGTCA-CAGAACTACGGTTATAAGTTCGGTCAAGA----GGAAGAGACCTA 160648 |||||| || || || | | ||||| | ||||||||||| ||||||||| || Sbjct 123614 CTGAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTA 123672 Query 160649 CAACA-----TCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCA 160703 ||| | | || || || |||||||| || | || |||||| |||||||||| Sbjct 123673 CAATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGT 123732 Query 160704 TTCAACAACTCCCGTTCACTTC---ACTTC--TTCCTGGCAGCATGGCCTGTAGTCGGAA 160758 ||||||||||| || | ||||| || | ||| ||||||| ||||| || | || | Sbjct 123733 TTCAACAACTCTCGCT-ACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTA 123791 Query 160759 TCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAA 160804 ||||| |||| ||| | ||| ||||||||||||| ||||||||||| Sbjct 123792 TCTGGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 >seq9 Length=34148863 Score = 143 bits (158), Expect = 3e-29 Identities = 158/208 (76%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 160323 GGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTA 160382 |||||||| || ||||| ||| |||||||| ||||| || || || || ||||||| Sbjct 1506953 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 1507012 Query 160383 TTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCT 160442 ||| | | || ||| | |||||||| |||||| |||| ||||||| | || || ||| Sbjct 1507013 TTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCT 1507072 Query 160443 GGTACTTTTAACTACATGC-TTGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTT 160501 | | ||| |||| |||| ||||||| | ||||||||||| ||||||||||||| | | Sbjct 1507073 AGCA-TTTCAACTTCATGTATTGTATTTCTGGCAGAACACAACATCCTTATGCATCTGGT 1507131 Query 160502 CCACATGCTCGGCGTTGCTGGGGTATTC 160529 |||||| | || || |||| |||||| Sbjct 1507132 TCACATGTTAGGTGTAACTGGTGTATTC 1507159 >seq1063 Length=431445 Score = 140 bits (154), Expect = 4e-28 Identities = 242/345 (70%), Gaps = 29/345 (8%) Strand=Plus/Minus Query 160419 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 160478 |||| ||||||| |||| || ||||||||||| ||| |||| ||||||| | |||||| Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166 Query 160479 CACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTG--CTGGGGTATTCGGTGGAT 160536 ||||| ||||||||||||| || |||||| | || || | |||| |||||||| Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----C 54110 Query 160537 CTTTGTTCTCTGCTATG----CACGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACG 160592 | | || || ||| ||| | || ||| || ||| ||| | |||| Sbjct 54109 CCTAGTACTATGC-ATGGTTCCTTGGTCCACTC-TTGTTTCATCA-------GGGAAATC 54059 Query 160593 ACTGAAACAGAGTCACAG--AACTACGGTTATAAGTTCGGTCAAGAGGAAGAGAC-CTAC 160649 ||||||| || || | | | | || | |||||| ||||||||||||| ||| Sbjct 54058 ACTGAAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTAC 54001 Query 160650 AA-----CATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCAT 160704 || || || || || |||||||| || | || ||||||||||||||||| | Sbjct 54000 AATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTT 53941 Query 160705 TCAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTG 160749 |||||||||| ||||| | || |||||| |||| || ||||||| Sbjct 53940 TCAACAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896 >seq10 Length=33665772 Score = 129 bits (142), Expect = 7e-25 Identities = 236/341 (69%), Gaps = 21/341 (6%) Strand=Plus/Plus Query 160419 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 160478 |||| ||||||| | || || ||||||||||| |||| |||| |||||||||| |||||| Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954 Query 160479 CACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTG--CTGGGGTATTCGGTGGAT 160536 ||||| ||||||||||||| || |||||| | || || | |||| |||||||| Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----C 4333010 Query 160537 CTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTG 160596 | | | | ||||||| || | || | || | || | | |||| |||| Sbjct 4333011 CCTAG-----TACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065 Query 160597 AAACAGAGTCACAG--AACTACGGTTATAAGTTCGGTCAAGAGGAAGAGAC-CTACAA-- 160651 ||| || || | | | | || | |||||| ||||||||||||| ||||| Sbjct 4333066 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 4333123 Query 160652 ---CATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAA 160708 ||| || | || |||||||| || | || |||| || ||||||||| ||||| Sbjct 4333124 GAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAA 4333183 Query 160709 CAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTG 160749 |||||| ||| || |||||| |||| || ||||||| Sbjct 4333184 CAACTCGACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224 >seq4 Length=30051516 Score = 116 bits (128), Expect = 4e-21 Identities = 128/169 (76%), Gaps = 6/169 (4%) Strand=Plus/Plus Query 160775 TGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGA 160834 |||| ||||||||||||| |||||||| || |||||||| |||||||| ||| | | || Sbjct 1282761 TGGTATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGA 1282820 Query 160835 TGGTCAAGGTCGTGTACTGAACACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGT-- 160892 |||| |||||||| | || || ||| || | | ||||||||| ||||||| Sbjct 1282821 CAGTCAGGGTCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTAT 1282878 Query 160893 --ATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCT 160939 |||||||| || ||||| ||||| || || |||||||| | ||||| Sbjct 1282879 GGATGGAAGTAATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927 >seq1035 Length=594915 Score = 107 bits (118), Expect = 2e-18 Identities = 265/396 (67%), Gaps = 32/396 (8%) Strand=Plus/Plus Query 162162 TTTGGGGTGGCAGCAATCTTTAGAT---TCCTGTTGTTTCTTCAAGGATTCCATAACTGG 162218 ||||| || ||||| || ||| ||| |||| | | ||| ||| | | |||| ||| Sbjct 236996 TTTGGTGTAGCAGCTATATTTCGATGAATCCTCT-GATTC--CAACGGTGGAATAATTGG 237052 Query 162219 ACCCTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCT 162278 || ||||||| || |||||||||||||| || || |||| | || || |||| Sbjct 237053 ACGTTGAACCCTTTGAATATGATGGGAGTTTA-GGAGTATTAGGCGCTGCTCTGCTATGC 237111 Query 162279 GCTATTCACGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACC 162338 |||||||| || | || |||| || |||| ||| ||||| | ||||| || Sbjct 237112 GCTATTCATGGTCT----GTATAAAACACTTTATTCGAAGATGGTAACGGTGCAAATACA 237167 Query 162339 T----TTAAGGCGTTTGATTCGACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAA 162394 | || || ||| | | || || | |||||||||||||| ||||||||||| || Sbjct 237168 TACTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTAA 237227 Query 162395 CCGCTTCTGGTCGCAGATC-----TTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCAT 162449 ||| || ||||| || ||| || || |||| ||||| || || || |||| Sbjct 237228 CCGTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGGC----- 237282 Query 162450 TTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATT--GGCATTA--T 162505 | ||||| ||||| | || | ||| |||||| ||||| || | || | Sbjct 237283 ---CTTATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGGTAGTAAGT 237339 Query 162506 TGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGT 162541 ||||| ||||| || || ||||| || || ||||| Sbjct 237340 CGGTCTGGCTCTGAATCTACGTGCCTATGACTTCGT 237375 >seq1042 Length=564079 Score = 105 bits (116), Expect = 7e-18 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 160401 GGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATG 160460 |||||||| | | || |||| |||||||| || |||||||||||||| ||| |||| Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801 Query 160461 CTTGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCT 160520 |||||||||| || || ||||| ||||||||||| || || ||||| | || ||||| Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCT 550741 Query 160521 GGG 160523 ||| Sbjct 550740 GGG 550738 >seq6 Length=34899179 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/136 (74%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 161905 ATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCAAC 161964 ||||| | | || || ||||||||||| || ||||| ||||| || || |||| Sbjct 26461273 ATTCTTTGTTGCTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGGTG---CCAAT 26461217 Query 161965 TTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGC 162024 | || || || |||| |||||| || ||||||||||| ||||| ||||| || || ||| Sbjct 26461216 TAGGCGGTCTGTGGACTTTTGTTGCTCTCCATGGTGCTTTCGCACTAATAGGCTT-ATGT 26461158 Query 162025 TCCGTCAGTTTGAACT 162040 | ||||| || |||| Sbjct 26461157 TACGTCAATTCTAACT 26461142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559453232005800