Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq1382 163 3e-35 seq1063 141 1e-28 seq10 132 6e-26 seq1035 107 2e-18 seq1042 86.0 8e-12 >seq1382 Length=172696 Score = 163 bits (180), Expect = 3e-35 Identities = 246/343 (72%), Gaps = 19/343 (6%) Strand=Plus/Plus Query 181500 CACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCA--GGTGTATTTGGTGGTT 181557 |||||||| || |||||||| || ||||||| ||| | || |||||||| || || | Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556 Query 181558 CACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTG 181617 | || |||||||| ||||| ||||| ||||| || ||| | || | || || |||| Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616 Query 181618 AAACTGAGTCA-CAGAACTATGGTTACAAGTTCGGACAAGAAGAAG----AGACATACAA 181672 ||| || || || | | ||||||| ||||| |||||||||| |||| ||||| Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675 Query 181673 CA-----TCGTCGCCGCCCACGGTTACTTTGGTCGCTTGATCTTCCAATATGCTTCATTC 181727 | | || || || || ||||| || | || |||||| ||||||||||| ||| Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735 Query 181728 AACAACTCACGTTCACTGC---ACTTC--TTCCTCGCAGCATGGCCTGTAGTTGGAATCT 181782 |||||||| || | ||| | || | ||| | ||||| ||||| || |||| |||| Sbjct 123736 AACAACTCTCGCT-ACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCT 123794 Query 181783 GGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAA 181825 || |||| || | || | ||||||||||| || |||||||| Sbjct 123795 GGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 >seq1063 Length=431445 Score = 141 bits (156), Expect = 1e-28 Identities = 235/335 (70%), Gaps = 21/335 (6%) Strand=Plus/Minus Query 181446 ATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAAC 181505 ||||| |||| || |||||||| ||| ||| |||| |||| || | ||||| |||||| Sbjct 54219 ATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAACACAAC 54160 Query 181506 ATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCA--GGTGTATTTGGTGGTTCACTGT 181563 || || ||||||| || |||||||| ||||| || |||||||| || | || Sbjct 54159 ATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG-----CCCT-- 54107 Query 181564 TCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTG 181623 ||| | ||||| ||||| ||||| |||| || || | || | ||||||| | Sbjct 54106 --AGTACTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTGAAAACG 54049 Query 181624 AGTCACAG--AACTATGGTTACAAGTTCGGACAAGAAGAAGAGACAT-ACAACA-----T 181675 | || | | | | || || ||||| |||| |||||||| | |||| | | Sbjct 54048 AATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGTAT 53991 Query 181676 CGTCGCCGCCCACGGTTACTTTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTC 181735 || || || || ||||| || | || |||||||||||||||||| ||||||||||| Sbjct 53990 TGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTC 53931 Query 181736 ACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTG 181770 ||||| | || |||||| | || || ||||||| Sbjct 53930 TCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896 >seq10 Length=33665772 Score = 132 bits (146), Expect = 6e-26 Identities = 233/335 (70%), Gaps = 21/335 (6%) Strand=Plus/Plus Query 181446 ATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAAC 181505 ||||| | || || |||||||| ||||||| |||| |||| ||||| ||||| |||||| Sbjct 4332901 ATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAACACAAC 4332960 Query 181506 ATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCA--GGTGTATTTGGTGGTTCACTGT 181563 || || ||||||| || |||||||| ||||| || |||||||| || | || Sbjct 4332961 ATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG-----CCCT-- 4333013 Query 181564 TCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTG 181623 ||| | ||||| ||||| ||||| | |||| || || | || | ||||||| | Sbjct 4333014 --AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTGAAAACG 4333071 Query 181624 AGTCACAG--AACTATGGTTACAAGTTCGGACAAGAAGAAGAGACAT-ACAA-----CAT 181675 | || | | | | || || ||||| |||| |||||||| | |||| ||| Sbjct 4333072 AATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGCAT 4333129 Query 181676 CGTCGCCGCCCACGGTTACTTTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTC 181735 || | || || ||||| || | || |||| || |||||||||| ||||||||||| Sbjct 4333130 TGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAACAACTC 4333189 Query 181736 ACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTG 181770 ||| || |||||| | || || ||||||| Sbjct 4333190 GACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224 >seq1035 Length=594915 Score = 107 bits (118), Expect = 2e-18 Identities = 232/343 (68%), Gaps = 28/343 (8%) Strand=Plus/Plus Query 182886 AACTGGACACTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTG 182945 || ||||| | ||||| || |||||||||||||| || || | || | || ||| Sbjct 237047 AATTGGACGTTGAACCCTTTGAATATGATGGGAGTTTA-GGAGTATTAGGCGCTGCTCTG 237105 Query 182946 CTCAGTGCTATCCATGGTGTCACAGTAGAGAATACCTTGTATGAAGATGGAGAACAG-GC 183004 || | ||||| |||||| | ||| | || || || | |||||||| ||| | || Sbjct 237106 CTATGCGCTATTCATGGTCT----GTATAAAACACTTTATTCGAAGATGGT-AACGGTGC 237160 Query 183005 AAACACAT----TTAAAGCGTTCGATTCCACTCAGGAGGAGGAGACCTATTCGATGGTTA 183060 ||| |||| || || || | | ||||| | || ||||| ||||| ||||| | Sbjct 237161 AAATACATACTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCA 237220 Query 183061 CAGCGAATCGTTTTTGGTCACAAATC-----TTCGGGGTTGCGTTTAGCAATAAGCGTTG 183115 | || || ||||||||||| |||||| || |||||||| ||| |||||| ||||| Sbjct 237221 CTGCTAACCGTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTG 237280 Query 183116 GTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGGAT 183175 | | ||||||| ||||| | || | ||| | ||| | | |||||||| | Sbjct 237281 G--------CCTTATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGGT 237332 Query 183176 ----CATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGT 183214 | || || ||||| ||||| ||||| ||||| || || Sbjct 237333 AGTAAGTCGGTCTGGCTCTGAATCTACGTGCCTATGACTTCGT 237375 >seq1042 Length=564079 Score = 86.0 bits (94), Expect = 8e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 181422 GGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATG 181481 |||||||| | | || || | ||||| | || ||||||||||| ||| ||| |||| Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801 Query 181482 CTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCA 181541 |||| ||||| || ||||||||||| || ||||| || || ||||||| ||| | || Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCT 550741 Query 181542 GG 181543 || Sbjct 550740 GG 550739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614561831135520