Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_026926.1
Length=192108
Score E
Sequences producing significant alignments: (Bits) Value
seq1382 163 3e-35
seq1063 141 1e-28
seq10 132 6e-26
seq1035 107 2e-18
seq1042 86.0 8e-12
>seq1382
Length=172696
Score = 163 bits (180), Expect = 3e-35
Identities = 246/343 (72%), Gaps = 19/343 (6%)
Strand=Plus/Plus
Query 181500 CACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCA--GGTGTATTTGGTGGTT 181557
|||||||| || |||||||| || ||||||| ||| | || |||||||| || || |
Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556
Query 181558 CACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTG 181617
| || |||||||| ||||| ||||| ||||| || ||| | || | || || ||||
Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616
Query 181618 AAACTGAGTCA-CAGAACTATGGTTACAAGTTCGGACAAGAAGAAG----AGACATACAA 181672
||| || || || | | ||||||| ||||| |||||||||| |||| |||||
Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675
Query 181673 CA-----TCGTCGCCGCCCACGGTTACTTTGGTCGCTTGATCTTCCAATATGCTTCATTC 181727
| | || || || || ||||| || | || |||||| ||||||||||| |||
Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735
Query 181728 AACAACTCACGTTCACTGC---ACTTC--TTCCTCGCAGCATGGCCTGTAGTTGGAATCT 181782
|||||||| || | ||| | || | ||| | ||||| ||||| || |||| ||||
Sbjct 123736 AACAACTCTCGCT-ACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCT 123794
Query 181783 GGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAA 181825
|| |||| || | || | ||||||||||| || ||||||||
Sbjct 123795 GGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837
>seq1063
Length=431445
Score = 141 bits (156), Expect = 1e-28
Identities = 235/335 (70%), Gaps = 21/335 (6%)
Strand=Plus/Minus
Query 181446 ATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAAC 181505
||||| |||| || |||||||| ||| ||| |||| |||| || | ||||| ||||||
Sbjct 54219 ATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAACACAAC 54160
Query 181506 ATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCA--GGTGTATTTGGTGGTTCACTGT 181563
|| || ||||||| || |||||||| ||||| || |||||||| || | ||
Sbjct 54159 ATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG-----CCCT-- 54107
Query 181564 TCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTG 181623
||| | ||||| ||||| ||||| |||| || || | || | ||||||| |
Sbjct 54106 --AGTACTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTGAAAACG 54049
Query 181624 AGTCACAG--AACTATGGTTACAAGTTCGGACAAGAAGAAGAGACAT-ACAACA-----T 181675
| || | | | | || || ||||| |||| |||||||| | |||| | |
Sbjct 54048 AATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGTAT 53991
Query 181676 CGTCGCCGCCCACGGTTACTTTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTC 181735
|| || || || ||||| || | || |||||||||||||||||| |||||||||||
Sbjct 53990 TGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTC 53931
Query 181736 ACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTG 181770
||||| | || |||||| | || || |||||||
Sbjct 53930 TCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896
>seq10
Length=33665772
Score = 132 bits (146), Expect = 6e-26
Identities = 233/335 (70%), Gaps = 21/335 (6%)
Strand=Plus/Plus
Query 181446 ATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAAC 181505
||||| | || || |||||||| ||||||| |||| |||| ||||| ||||| ||||||
Sbjct 4332901 ATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAACACAAC 4332960
Query 181506 ATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCA--GGTGTATTTGGTGGTTCACTGT 181563
|| || ||||||| || |||||||| ||||| || |||||||| || | ||
Sbjct 4332961 ATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG-----CCCT-- 4333013
Query 181564 TCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTG 181623
||| | ||||| ||||| ||||| | |||| || || | || | ||||||| |
Sbjct 4333014 --AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTGAAAACG 4333071
Query 181624 AGTCACAG--AACTATGGTTACAAGTTCGGACAAGAAGAAGAGACAT-ACAA-----CAT 181675
| || | | | | || || ||||| |||| |||||||| | |||| |||
Sbjct 4333072 AATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGCAT 4333129
Query 181676 CGTCGCCGCCCACGGTTACTTTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTC 181735
|| | || || ||||| || | || |||| || |||||||||| |||||||||||
Sbjct 4333130 TGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAACAACTC 4333189
Query 181736 ACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTG 181770
||| || |||||| | || || |||||||
Sbjct 4333190 GACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224
>seq1035
Length=594915
Score = 107 bits (118), Expect = 2e-18
Identities = 232/343 (68%), Gaps = 28/343 (8%)
Strand=Plus/Plus
Query 182886 AACTGGACACTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTG 182945
|| ||||| | ||||| || |||||||||||||| || || | || | || |||
Sbjct 237047 AATTGGACGTTGAACCCTTTGAATATGATGGGAGTTTA-GGAGTATTAGGCGCTGCTCTG 237105
Query 182946 CTCAGTGCTATCCATGGTGTCACAGTAGAGAATACCTTGTATGAAGATGGAGAACAG-GC 183004
|| | ||||| |||||| | ||| | || || || | |||||||| ||| | ||
Sbjct 237106 CTATGCGCTATTCATGGTCT----GTATAAAACACTTTATTCGAAGATGGT-AACGGTGC 237160
Query 183005 AAACACAT----TTAAAGCGTTCGATTCCACTCAGGAGGAGGAGACCTATTCGATGGTTA 183060
||| |||| || || || | | ||||| | || ||||| ||||| ||||| |
Sbjct 237161 AAATACATACTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCA 237220
Query 183061 CAGCGAATCGTTTTTGGTCACAAATC-----TTCGGGGTTGCGTTTAGCAATAAGCGTTG 183115
| || || ||||||||||| |||||| || |||||||| ||| |||||| |||||
Sbjct 237221 CTGCTAACCGTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTG 237280
Query 183116 GTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGGAT 183175
| | ||||||| ||||| | || | ||| | ||| | | |||||||| |
Sbjct 237281 G--------CCTTATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGGT 237332
Query 183176 ----CATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGT 183214
| || || ||||| ||||| ||||| ||||| || ||
Sbjct 237333 AGTAAGTCGGTCTGGCTCTGAATCTACGTGCCTATGACTTCGT 237375
>seq1042
Length=564079
Score = 86.0 bits (94), Expect = 8e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 181422 GGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATG 181481
|||||||| | | || || | ||||| | || ||||||||||| ||| ||| ||||
Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801
Query 181482 CTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCA 181541
|||| ||||| || ||||||||||| || ||||| || || ||||||| ||| | ||
Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCT 550741
Query 181542 GG 181543
||
Sbjct 550740 GG 550739
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 614561831135520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |