Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_026927.1
Length=228143
Score E
Sequences producing significant alignments: (Bits) Value
seq1382 140 5e-28
seq1035 89.7 8e-13
seq4 89.7 8e-13
>seq1382
Length=172696
Score = 140 bits (154), Expect = 5e-28
Identities = 242/345 (70%), Gaps = 19/345 (6%)
Strand=Plus/Plus
Query 174985 AACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCA--GGTGTCTTCGGTGG 175042
|||| |||||| | ||||| || || ||||||| || | || ||||| ||||| ||
Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554
Query 175043 TTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTGTCCGTGAGACAAC 175102
|| | ||| || ||||||||||| | || |||||| | || | || || ||
Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCAC 123614
Query 175103 TGAAACTGAGTCA-CAGAACTATGGTTACAAGTTCGGCCAAGAAGAAG----AGACCTAT 175157
||||| || || || | | ||||||| ||||| |||||||||| |||| ||
Sbjct 123615 TGAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTAC 123673
Query 175158 AACA-----TCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCAT 175212
|| | | || || || ||||| || || | || |||||| ||||||| ||| |
Sbjct 123674 AATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTT 123733
Query 175213 TCAACAACTCACGCTCACTCC---ACTTC--TTCTTAGCCGCATGGCCAGTTGTGGGTAT 175267
|||||||||| |||| ||| | || | ||||| || || ||||||||| | |||||
Sbjct 123734 TCAACAACTCTCGCT-ACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTAT 123792
Query 175268 CTGGTTCACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAA 175312
|||| |||| || | ||| || ||| ||||| |||||||||||
Sbjct 123793 CTGGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837
>seq1035
Length=594915
Score = 89.7 bits (98), Expect = 8e-13
Identities = 202/296 (68%), Gaps = 22/296 (7%)
Strand=Plus/Plus
Query 176325 TTTGGTGTGGCAGCAATCTTTAGAT---TCCTATTGTTTCTTCAGGGTTTCCACAACTGG 176381
|||||||| ||||| || ||| ||| |||| | | ||| || | | | || |||
Sbjct 236996 TTTGGTGTAGCAGCTATATTTCGATGAATCCTCT-GATTC--CAACGGTGGAATAATTGG 237052
Query 176382 ACACTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCT 176441
|| ||||||| || |||||||||||||| || || |||| | || || ||||
Sbjct 237053 ACGTTGAACCCTTTGAATATGATGGGAGTT-TAGGAGTATTAGGCGCTGCTCTGCTATGC 237111
Query 176442 GCAATCCATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAAC-AACAC 176500
|| || ||||| |||| |||| || ||| |||||||| ||| | | || ||
Sbjct 237112 GCTATTCATGG----TCTGTATAAAACACTTTATTCGAAGATGG-TAACGGTGCAAATAC 237166
Query 176501 CTTCACTGCGTTCGATT----CCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGA 176556
| | | ||| | || | || || | |||||||| ||||| ||||| ||||| |
Sbjct 237167 ATACTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTA 237226
Query 176557 ACCGCTTCTGGTCGCAAATC-----TTCGGGGTTGCGTTTAGTAATAAGCGTTGGC 176607
|||| || ||||| |||||| || |||||||| ||| ||||| |||||||
Sbjct 237227 ACCGTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGGC 237282
>seq4
Length=30051516
Score = 89.7 bits (98), Expect = 8e-13
Identities = 120/166 (72%), Gaps = 6/166 (4%)
Strand=Plus/Plus
Query 175283 TGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGA 175342
|||| || ||| ||||| |||||||| ||||||||||| |||||||| || || | ||
Sbjct 1282761 TGGTATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGA 1282820
Query 175343 CGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTG---- 175398
| | || ||| | || | || || ||| ||| | | || | ||| |||||
Sbjct 1282821 CAGTCAGGGTCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTAT 1282878
Query 175399 GGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGA 175444
||||||||||||| ||||| | ||||| || |||||||| ||||
Sbjct 1282879 GGATGGAAGTAATACATGAACGTAATGCTCATAACTTCCCTTTAGA 1282924
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 729863368012920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |