Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq1382 140 5e-28 seq1035 89.7 8e-13 seq4 89.7 8e-13 >seq1382 Length=172696 Score = 140 bits (154), Expect = 5e-28 Identities = 242/345 (70%), Gaps = 19/345 (6%) Strand=Plus/Plus Query 174985 AACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCA--GGTGTCTTCGGTGG 175042 |||| |||||| | ||||| || || ||||||| || | || ||||| ||||| || Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554 Query 175043 TTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTGTCCGTGAGACAAC 175102 || | ||| || ||||||||||| | || |||||| | || | || || || Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCAC 123614 Query 175103 TGAAACTGAGTCA-CAGAACTATGGTTACAAGTTCGGCCAAGAAGAAG----AGACCTAT 175157 ||||| || || || | | ||||||| ||||| |||||||||| |||| || Sbjct 123615 TGAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTAC 123673 Query 175158 AACA-----TCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCAT 175212 || | | || || || ||||| || || | || |||||| ||||||| ||| | Sbjct 123674 AATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTT 123733 Query 175213 TCAACAACTCACGCTCACTCC---ACTTC--TTCTTAGCCGCATGGCCAGTTGTGGGTAT 175267 |||||||||| |||| ||| | || | ||||| || || ||||||||| | ||||| Sbjct 123734 TCAACAACTCTCGCT-ACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTAT 123792 Query 175268 CTGGTTCACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAA 175312 |||| |||| || | ||| || ||| ||||| ||||||||||| Sbjct 123793 CTGGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 >seq1035 Length=594915 Score = 89.7 bits (98), Expect = 8e-13 Identities = 202/296 (68%), Gaps = 22/296 (7%) Strand=Plus/Plus Query 176325 TTTGGTGTGGCAGCAATCTTTAGAT---TCCTATTGTTTCTTCAGGGTTTCCACAACTGG 176381 |||||||| ||||| || ||| ||| |||| | | ||| || | | | || ||| Sbjct 236996 TTTGGTGTAGCAGCTATATTTCGATGAATCCTCT-GATTC--CAACGGTGGAATAATTGG 237052 Query 176382 ACACTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCT 176441 || ||||||| || |||||||||||||| || || |||| | || || |||| Sbjct 237053 ACGTTGAACCCTTTGAATATGATGGGAGTT-TAGGAGTATTAGGCGCTGCTCTGCTATGC 237111 Query 176442 GCAATCCATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAAC-AACAC 176500 || || ||||| |||| |||| || ||| |||||||| ||| | | || || Sbjct 237112 GCTATTCATGG----TCTGTATAAAACACTTTATTCGAAGATGG-TAACGGTGCAAATAC 237166 Query 176501 CTTCACTGCGTTCGATT----CCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGA 176556 | | | ||| | || | || || | |||||||| ||||| ||||| ||||| | Sbjct 237167 ATACTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTA 237226 Query 176557 ACCGCTTCTGGTCGCAAATC-----TTCGGGGTTGCGTTTAGTAATAAGCGTTGGC 176607 |||| || ||||| |||||| || |||||||| ||| ||||| ||||||| Sbjct 237227 ACCGTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGGC 237282 >seq4 Length=30051516 Score = 89.7 bits (98), Expect = 8e-13 Identities = 120/166 (72%), Gaps = 6/166 (4%) Strand=Plus/Plus Query 175283 TGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGA 175342 |||| || ||| ||||| |||||||| ||||||||||| |||||||| || || | || Sbjct 1282761 TGGTATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGA 1282820 Query 175343 CGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTG---- 175398 | | || ||| | || | || || ||| ||| | | || | ||| ||||| Sbjct 1282821 CAGTCAGGGTCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTAT 1282878 Query 175399 GGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGA 175444 ||||||||||||| ||||| | ||||| || |||||||| |||| Sbjct 1282879 GGATGGAAGTAATACATGAACGTAATGCTCATAACTTCCCTTTAGA 1282924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729863368012920