Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq1382 167 3e-36 seq1063 145 9e-30 seq10 136 5e-27 seq9 118 1e-21 seq1035 104 3e-17 seq1042 86.0 8e-12 >seq1382 Length=172696 Score = 167 bits (184), Expect = 3e-36 Identities = 248/345 (72%), Gaps = 19/345 (6%) Strand=Plus/Plus Query 178366 AACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCA--GGTGTATTCGGTGG 178423 |||||||||| || ||||| || || ||||||| ||| | || ||||||||||| || Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554 Query 178424 TTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGAC 178483 || || |||||||| ||||| ||||| ||||| || ||| | | | ||||| || Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCAC 123614 Query 178484 TGAAACAGAATC-ACAGAACTATGGTTATAAGTTCGGACAAGAA----GAAGAGACATAC 178538 ||||| ||||| || | | ||||| | ||||| |||||| |||||||| ||| Sbjct 123615 TGAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTAC 123673 Query 178539 AA-----CATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCAT 178593 || || || || || ||||| || || | || |||||| ||||||||||| | Sbjct 123674 AATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTT 123733 Query 178594 TCAACAACTCACGTTCACTGC---ACTT--CTTCCTCGCAGCATGGCCTGTAGTTGGAAT 178648 |||||||||| || | ||| | || | ||| | ||||| ||||| || |||| || Sbjct 123734 TCAACAACTCTCGCT-ACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTAT 123792 Query 178649 CTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAA 178693 |||| |||| || | || | ||||||||||| || |||||||| Sbjct 123793 CTGGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 >seq1063 Length=431445 Score = 145 bits (160), Expect = 9e-30 Identities = 235/335 (70%), Gaps = 21/335 (6%) Strand=Plus/Minus Query 178314 ATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAAC 178373 ||||| |||| || |||||||| ||| ||| |||| |||| || | |||||||||||| Sbjct 54219 ATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAACACAAC 54160 Query 178374 ATTCTGATGCACCCCTTCCACATGTTGGGTGT--CGCAGGTGTATTCGGTGGTTCACTGT 178431 || || ||||| | || |||||||| ||||| | | ||||||||||| | || Sbjct 54159 ATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG-----CCCT-- 54107 Query 178432 TCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAG 178491 ||| | ||||| ||||| ||||| |||| || | | |||| ||||||| | Sbjct 54106 --AGTACTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTGAAAACG 54049 Query 178492 AATCACAG--AACTATGGTTATAAGTTCGGACAAGAAGAAGAGAC------ATACAACAT 178543 |||| | | | | || | ||||| |||| |||||||| ||| | || Sbjct 54048 AATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGTAT 53991 Query 178544 CGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTC 178603 || || || ||||| || || | || |||||||||||||||||| ||||||||||| Sbjct 53990 TGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTC 53931 Query 178604 ACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTG 178638 ||||| | || |||||| | || || ||||||| Sbjct 53930 TCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896 >seq10 Length=33665772 Score = 136 bits (150), Expect = 5e-27 Identities = 233/335 (70%), Gaps = 21/335 (6%) Strand=Plus/Plus Query 178314 ATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAAC 178373 ||||| | || || |||||||| ||||||| |||| |||| ||||| |||||||||||| Sbjct 4332901 ATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAACACAAC 4332960 Query 178374 ATTCTGATGCACCCCTTCCACATGTTGGGTGT--CGCAGGTGTATTCGGTGGTTCACTGT 178431 || || ||||| | || |||||||| ||||| | | ||||||||||| | || Sbjct 4332961 ATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG-----CCCT-- 4333013 Query 178432 TCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAG 178491 ||| | ||||| ||||| ||||| | |||| || | | |||| ||||||| | Sbjct 4333014 --AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTGAAAACG 4333071 Query 178492 AATCACAG--AACTATGGTTATAAGTTCGGACAAGAAGAAGAGAC------ATACAACAT 178543 |||| | | | | || | ||||| |||| |||||||| ||| | ||| Sbjct 4333072 AATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGCAT 4333129 Query 178544 CGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTC 178603 || | || ||||| || || | || |||| || |||||||||| ||||||||||| Sbjct 4333130 TGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAACAACTC 4333189 Query 178604 ACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTG 178638 ||| || |||||| | || || ||||||| Sbjct 4333190 GACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224 >seq9 Length=34148863 Score = 118 bits (130), Expect = 1e-21 Identities = 174/244 (71%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 178176 TACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 178235 ||||| | | ||||| |||||| | | | | |||||||| || ||||| ||| Sbjct 1506917 TACATTGATCATGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGATTGCTGTT 1506976 Query 178236 GCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAA 178295 ||||| || ||||| || ||||| || | || || ||| || |||| ||| | |||||| Sbjct 1506977 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 1507036 Query 178296 GGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGC-TTGT 178354 || || ||||| | ||||| | || || ||| | | ||||||| |||| |||| Sbjct 1507037 GGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTAGCAT-TTCAACTTCATGTATTGT 1507095 Query 178355 TTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGT 178414 || | |||||||||||||| || ||||| | | |||||||| ||||| | ||||| Sbjct 1507096 ATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGTGT 1507155 Query 178415 ATTC 178418 |||| Sbjct 1507156 ATTC 1507159 >seq1035 Length=594915 Score = 104 bits (114), Expect = 3e-17 Identities = 230/342 (67%), Gaps = 26/342 (8%) Strand=Plus/Plus Query 179748 AACTGGACGCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTG 179807 || |||||| | ||||| || |||||||||||||| || || |||| | || ||| Sbjct 237047 AATTGGACGTTGAACCCTTTGAATATGATGGGAGTTTA-GGAGTATTAGGCGCTGCTCTG 237105 Query 179808 CTCAGTGCTATCCATGGAGTTACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCA 179867 || | ||||| ||||| ||||| | || || || | |||||||| | ||| Sbjct 237106 CTATGCGCTATTCATGGT----CTGTATAAAACACTTTATTCGAAGATGGTAACGGTGCA 237161 Query 179868 AATACCT----TTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCAC 179923 ||||| | || || ||| | | || || | |||||||||||||| |||||||| Sbjct 237162 AATACATACTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCAC 237221 Query 179924 TGCAAACCGCTTCTGGTCGCAGATC-----TTCGGTATTGCATTTTCTAACAAGCGGTGG 179978 ||| ||||| || ||||| || ||| || || |||| ||||| || || || ||| Sbjct 237222 TGCTAACCGTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGG 237281 Query 179979 CTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATT--GGCA 180036 | | ||||| ||||| | || | ||| |||||| ||||| || | Sbjct 237282 C--------CTTATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGGTA 237333 Query 180037 TTA--TTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGT 180076 || | ||||| ||||| || || ||||| || || ||||| Sbjct 237334 GTAAGTCGGTCTGGCTCTGAATCTACGTGCCTATGACTTCGT 237375 >seq1042 Length=564079 Score = 86.0 bits (94), Expect = 8e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 178290 GGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATG 178349 |||||||| |||| || | ||||| | || ||||||||||| ||| ||| |||| Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801 Query 178350 CTTGTTTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCA 178409 |||| ||||| || || |||||||| || |||||||| || ||||||| ||| | || Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCT 550741 Query 178410 GG 178411 || Sbjct 550740 GG 550739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605954612203920