Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_026928.1
Length=189418
Score E
Sequences producing significant alignments: (Bits) Value
seq1382 167 3e-36
seq1063 145 9e-30
seq10 136 5e-27
seq9 118 1e-21
seq1035 104 3e-17
seq1042 86.0 8e-12
>seq1382
Length=172696
Score = 167 bits (184), Expect = 3e-36
Identities = 248/345 (72%), Gaps = 19/345 (6%)
Strand=Plus/Plus
Query 178366 AACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCA--GGTGTATTCGGTGG 178423
|||||||||| || ||||| || || ||||||| ||| | || ||||||||||| ||
Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554
Query 178424 TTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGAC 178483
|| || |||||||| ||||| ||||| ||||| || ||| | | | ||||| ||
Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCAC 123614
Query 178484 TGAAACAGAATC-ACAGAACTATGGTTATAAGTTCGGACAAGAA----GAAGAGACATAC 178538
||||| ||||| || | | ||||| | ||||| |||||| |||||||| |||
Sbjct 123615 TGAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTAC 123673
Query 178539 AA-----CATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCAT 178593
|| || || || || ||||| || || | || |||||| ||||||||||| |
Sbjct 123674 AATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTT 123733
Query 178594 TCAACAACTCACGTTCACTGC---ACTT--CTTCCTCGCAGCATGGCCTGTAGTTGGAAT 178648
|||||||||| || | ||| | || | ||| | ||||| ||||| || |||| ||
Sbjct 123734 TCAACAACTCTCGCT-ACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTAT 123792
Query 178649 CTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAA 178693
|||| |||| || | || | ||||||||||| || ||||||||
Sbjct 123793 CTGGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837
>seq1063
Length=431445
Score = 145 bits (160), Expect = 9e-30
Identities = 235/335 (70%), Gaps = 21/335 (6%)
Strand=Plus/Minus
Query 178314 ATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAAC 178373
||||| |||| || |||||||| ||| ||| |||| |||| || | ||||||||||||
Sbjct 54219 ATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAACACAAC 54160
Query 178374 ATTCTGATGCACCCCTTCCACATGTTGGGTGT--CGCAGGTGTATTCGGTGGTTCACTGT 178431
|| || ||||| | || |||||||| ||||| | | ||||||||||| | ||
Sbjct 54159 ATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG-----CCCT-- 54107
Query 178432 TCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAG 178491
||| | ||||| ||||| ||||| |||| || | | |||| ||||||| |
Sbjct 54106 --AGTACTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTGAAAACG 54049
Query 178492 AATCACAG--AACTATGGTTATAAGTTCGGACAAGAAGAAGAGAC------ATACAACAT 178543
|||| | | | | || | ||||| |||| |||||||| ||| | ||
Sbjct 54048 AATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGTAT 53991
Query 178544 CGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTC 178603
|| || || ||||| || || | || |||||||||||||||||| |||||||||||
Sbjct 53990 TGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTC 53931
Query 178604 ACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTG 178638
||||| | || |||||| | || || |||||||
Sbjct 53930 TCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896
>seq10
Length=33665772
Score = 136 bits (150), Expect = 5e-27
Identities = 233/335 (70%), Gaps = 21/335 (6%)
Strand=Plus/Plus
Query 178314 ATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAAC 178373
||||| | || || |||||||| ||||||| |||| |||| ||||| ||||||||||||
Sbjct 4332901 ATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAACACAAC 4332960
Query 178374 ATTCTGATGCACCCCTTCCACATGTTGGGTGT--CGCAGGTGTATTCGGTGGTTCACTGT 178431
|| || ||||| | || |||||||| ||||| | | ||||||||||| | ||
Sbjct 4332961 ATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG-----CCCT-- 4333013
Query 178432 TCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAG 178491
||| | ||||| ||||| ||||| | |||| || | | |||| ||||||| |
Sbjct 4333014 --AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTGAAAACG 4333071
Query 178492 AATCACAG--AACTATGGTTATAAGTTCGGACAAGAAGAAGAGAC------ATACAACAT 178543
|||| | | | | || | ||||| |||| |||||||| ||| | |||
Sbjct 4333072 AATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGCAT 4333129
Query 178544 CGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTC 178603
|| | || ||||| || || | || |||| || |||||||||| |||||||||||
Sbjct 4333130 TGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAACAACTC 4333189
Query 178604 ACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTG 178638
||| || |||||| | || || |||||||
Sbjct 4333190 GACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224
>seq9
Length=34148863
Score = 118 bits (130), Expect = 1e-21
Identities = 174/244 (71%), Gaps = 2/244 (1%)
Strand=Plus/Plus
Query 178176 TACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 178235
||||| | | ||||| |||||| | | | | |||||||| || ||||| |||
Sbjct 1506917 TACATTGATCATGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGATTGCTGTT 1506976
Query 178236 GCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAA 178295
||||| || ||||| || ||||| || | || || ||| || |||| ||| | ||||||
Sbjct 1506977 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 1507036
Query 178296 GGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGC-TTGT 178354
|| || ||||| | ||||| | || || ||| | | ||||||| |||| ||||
Sbjct 1507037 GGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTAGCAT-TTCAACTTCATGTATTGT 1507095
Query 178355 TTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGT 178414
|| | |||||||||||||| || ||||| | | |||||||| ||||| | |||||
Sbjct 1507096 ATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGTGT 1507155
Query 178415 ATTC 178418
||||
Sbjct 1507156 ATTC 1507159
>seq1035
Length=594915
Score = 104 bits (114), Expect = 3e-17
Identities = 230/342 (67%), Gaps = 26/342 (8%)
Strand=Plus/Plus
Query 179748 AACTGGACGCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTG 179807
|| |||||| | ||||| || |||||||||||||| || || |||| | || |||
Sbjct 237047 AATTGGACGTTGAACCCTTTGAATATGATGGGAGTTTA-GGAGTATTAGGCGCTGCTCTG 237105
Query 179808 CTCAGTGCTATCCATGGAGTTACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCA 179867
|| | ||||| ||||| ||||| | || || || | |||||||| | |||
Sbjct 237106 CTATGCGCTATTCATGGT----CTGTATAAAACACTTTATTCGAAGATGGTAACGGTGCA 237161
Query 179868 AATACCT----TTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCAC 179923
||||| | || || ||| | | || || | |||||||||||||| ||||||||
Sbjct 237162 AATACATACTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCAC 237221
Query 179924 TGCAAACCGCTTCTGGTCGCAGATC-----TTCGGTATTGCATTTTCTAACAAGCGGTGG 179978
||| ||||| || ||||| || ||| || || |||| ||||| || || || |||
Sbjct 237222 TGCTAACCGTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGG 237281
Query 179979 CTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATT--GGCA 180036
| | ||||| ||||| | || | ||| |||||| ||||| || |
Sbjct 237282 C--------CTTATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGGTA 237333
Query 180037 TTA--TTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGT 180076
|| | ||||| ||||| || || ||||| || || |||||
Sbjct 237334 GTAAGTCGGTCTGGCTCTGAATCTACGTGCCTATGACTTCGT 237375
>seq1042
Length=564079
Score = 86.0 bits (94), Expect = 8e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 178290 GGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATG 178349
|||||||| |||| || | ||||| | || ||||||||||| ||| ||| ||||
Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801
Query 178350 CTTGTTTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCA 178409
|||| ||||| || || |||||||| || |||||||| || ||||||| ||| | ||
Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCT 550741
Query 178410 GG 178411
||
Sbjct 550740 GG 550739
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 605954612203920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |