Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_027130.1
Length=172688
Score E
Sequences producing significant alignments: (Bits) Value
seq1063 143 3e-29
seq9 143 3e-29
seq10 125 8e-24
seq1382 122 1e-22
seq1042 114 1e-20
seq4 104 3e-17
seq1035 102 9e-17
seq6 82.4 8e-11
>seq1063
Length=431445
Score = 143 bits (158), Expect = 3e-29
Identities = 238/341 (70%), Gaps = 21/341 (6%)
Strand=Plus/Minus
Query 158838 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 158897
|||| ||||||| |||| || ||||||||||| ||| |||| ||||||| | ||||||
Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166
Query 158898 CACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTG--CTGGGGTATTCGGTGGAT 158955
||||||||||||||||| | || || ||| | ||||| | |||| ||||||||
Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 54111
Query 158956 CTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTG 159015
| || | |||||||||| | || || | || | | |||| ||||
Sbjct 54110 CCCT----AGTACTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTG 54055
Query 159016 AAACAGAGTCACAG--AACTATGGTTACAAGTTCGGACAAGAAGAAGAAAC------ATA 159067
||| || || | | | | || || ||||| |||| ||||| || |||
Sbjct 54054 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 53997
Query 159068 TAATATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAA 159127
| ||| || || || |||||||| || | || |||||||||||||| ||| |||||
Sbjct 53996 GAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAA 53937
Query 159128 CAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTG 159168
|||||| ||||| || || |||||| | ||||| |||||||
Sbjct 53936 CAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896
>seq9
Length=34148863
Score = 143 bits (158), Expect = 3e-29
Identities = 158/208 (76%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 158742 GGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTGCTGTA 158801
|||||||| || ||||| ||| |||||||| || || || || || || |||||||
Sbjct 1506953 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 1507012
Query 158802 TTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCT 158861
||| | |||| ||| | |||||||| |||||| |||| ||||||| | || || |||
Sbjct 1507013 TTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCT 1507072
Query 158862 GGTACTTTTAACTACATGC-TTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTT 158920
| | ||| |||| |||| ||||||| | ||||||||||||||||||||||| | | |
Sbjct 1507073 AGCA-TTTCAACTTCATGTATTGTATTTCTGGCAGAACACAACATCCTTATGCATCTGGT 1507131
Query 158921 CCATATGCTCGGTGTTGCTGGGGTATTC 158948
|| ||| | ||||| |||| ||||||
Sbjct 1507132 TCACATGTTAGGTGTAACTGGTGTATTC 1507159
>seq10
Length=33665772
Score = 125 bits (138), Expect = 8e-24
Identities = 234/341 (69%), Gaps = 21/341 (6%)
Strand=Plus/Plus
Query 158838 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 158897
|||| ||||||| | || || ||||||||||| |||| |||| |||||||||| ||||||
Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954
Query 158898 CACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTG--CTGGGGTATTCGGTGGAT 158955
||||||||||||||||| | || || ||| | ||||| | |||| ||||||||
Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 4333009
Query 158956 CTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTG 159015
| || | |||||||||| | || | || | || | | |||| ||||
Sbjct 4333010 CCCT----AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065
Query 159016 AAACAGAGTCACAG--AACTATGGTTACAAGTTCGGACAAGAAGAAGAAAC------ATA 159067
||| || || | | | | || || ||||| |||| ||||| || |||
Sbjct 4333066 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 4333123
Query 159068 TAATATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAA 159127
| || || | || |||||||| || | || |||| || |||||| ||| |||||
Sbjct 4333124 GAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAA 4333183
Query 159128 CAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTG 159168
|||||| ||| | || |||||| | ||||| |||||||
Sbjct 4333184 CAACTCGACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224
>seq1382
Length=172696
Score = 122 bits (134), Expect = 1e-22
Identities = 237/345 (69%), Gaps = 19/345 (6%)
Strand=Plus/Plus
Query 158896 AACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCT--GGGGTATTCGGTGG 158953
||||||||||||||||||| || || | ||| | ||| | ||| || |||||||| ||
Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554
Query 158954 ATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGA 159012
|| || ||| |||||||||||| | || || || | | | || | ||||| |
Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCA 123613
Query 159013 CTGAAACAGAGTCA-CAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACA------ 159065
|||||| || || || | | ||||||| ||||| |||||||||| || |
Sbjct 123614 CTGAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTA 123672
Query 159066 ---TATAATATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCA 159122
|| | ||| || || || |||||||| || | || |||||| ||||||| |||
Sbjct 123673 CAATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGT 123732
Query 159123 TTCAACAACTCCCG----TTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCAT 159178
||||||||||| || ||| | || ||| | || || ||||| ||| | || ||
Sbjct 123733 TTCAACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTAT 123792
Query 159179 CTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAA 159223
|||| |||| || | || | |||||||| |||||||| ||
Sbjct 123793 CTGGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837
>seq1042
Length=564079
Score = 114 bits (126), Expect = 1e-20
Identities = 99/123 (80%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 158820 GGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATG 158879
|||||||| | | || |||| |||||||| || |||||||||||||| ||| ||||
Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801
Query 158880 CTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCT 158939
|||||||||| || || |||||||||||||||||||| || | ||| | ||| |||||
Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCT 550741
Query 158940 GGG 158942
|||
Sbjct 550740 GGG 550738
>seq4
Length=30051516
Score = 104 bits (114), Expect = 3e-17
Identities = 119/159 (75%), Gaps = 6/159 (4%)
Strand=Plus/Plus
Query 159204 ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 159263
|||||||| |||||||| || |||||||| |||||||| ||| | |||| ||||||||
Sbjct 1282771 ACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTCAGGGT 1282830
Query 159264 CGTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGT----ATGGAAGT 159319
||||| | || || ||| ||| | | || ||||| ||| ||| ||||||||
Sbjct 1282831 CGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATGGAAGT 1282888
Query 159320 TATGCATGAGCGTAACGCACACAACTTCCCACTCGACCT 159358
|| ||||| ||||| || || |||||||| | |||||
Sbjct 1282889 AATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927
>seq1035
Length=594915
Score = 102 bits (112), Expect = 9e-17
Identities = 302/460 (66%), Gaps = 48/460 (10%)
Strand=Plus/Plus
Query 160373 TTTGGGGTGGCAGCAATCTTTAGAT---TCCTGTTGTTCCTTCAAGGATTTCACAACTGG 160429
||||| || ||||| || ||| ||| |||| | |||| || | | | || |||
Sbjct 236996 TTTGGTGTAGCAGCTATATTTCGATGAATCCTCTGATTCC---AACGGTGGAATAATTGG 237052
Query 160430 ACGCTTAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGT 160489
||| | ||||| || |||||||||||||| || || |||| | || ||||| |
Sbjct 237053 ACGTTGAACCCTTTGAATATGATGGGAGTTTA-GGAGTATTAGGCGCTGCTCTGCTATGC 237111
Query 160490 GCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACC 160549
|| || ||||| ||||| | ||||| | | |||||||| | ||||||||
Sbjct 237112 GCTATTCATGGT----CTGTATAAAACACTTTATTCGAAGATGGTAACGGTGCAAATACA 237167
Query 160550 T----TTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAA 160605
| || || ||| | | || || | |||||||||||||| ||||||||||| ||
Sbjct 237168 TACTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTAA 237227
Query 160606 CCGCTTCTGGTCGCAGATC-----TTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCAT 160660
||| || ||||| || ||| || || |||| ||||| || || || ||||
Sbjct 237228 CCGTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGGC----- 237282
Query 160661 TTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCAGTATT--GGCATTA--T 160716
| ||||| ||||| | || | ||| | |||| |||| || | || |
Sbjct 237283 ---CTTATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGGTAGTAAGT 237339
Query 160717 TGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGA 160776
||||| ||||| ||||| ||||| || || ||||| || | |||| ||
Sbjct 237340 CGGTCTGGCTCTGAATCTACGTGCCTATGACTTCGT--TTCCCG---TTAG-------GA 237387
Query 160777 AGATCCAGAATTTGAGACCTT----CTACACCAAGAACAT 160812
|||||| ||||| || || || |||||||||||| ||
Sbjct 237388 AGATCCGGAATTGGATACTTTATACCTACACCAAGAATAT 237427
>seq6
Length=34899179
Score = 82.4 bits (90), Expect = 8e-11
Identities = 101/136 (74%), Gaps = 4/136 (3%)
Strand=Plus/Minus
Query 160116 ATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAAC 160175
||||| | | || || ||||||||||| || ||||| ||||| |||| ||||
Sbjct 26461273 ATTCTTTGTTGCTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGGTG---CCAAT 26461217
Query 160176 TTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGC 160235
| || || || |||| |||||| || ||||||||||| ||||| ||||| || || |||
Sbjct 26461216 TAGGCGGTCTGTGGACTTTTGTTGCTCTCCATGGTGCTTTCGCACTAATAGGCTT-ATGT 26461158
Query 160236 TCCGTCAGTTTGAACT 160251
| ||||| || ||||
Sbjct 26461157 TACGTCAATTCTAACT 26461142
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 552423469926720
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