Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq1063 143 3e-29 seq9 143 3e-29 seq10 125 8e-24 seq1382 122 1e-22 seq1042 114 1e-20 seq4 104 3e-17 seq1035 102 9e-17 seq6 82.4 8e-11 >seq1063 Length=431445 Score = 143 bits (158), Expect = 3e-29 Identities = 238/341 (70%), Gaps = 21/341 (6%) Strand=Plus/Minus Query 158838 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 158897 |||| ||||||| |||| || ||||||||||| ||| |||| ||||||| | |||||| Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166 Query 158898 CACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTG--CTGGGGTATTCGGTGGAT 158955 ||||||||||||||||| | || || ||| | ||||| | |||| |||||||| Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 54111 Query 158956 CTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTG 159015 | || | |||||||||| | || || | || | | |||| |||| Sbjct 54110 CCCT----AGTACTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTG 54055 Query 159016 AAACAGAGTCACAG--AACTATGGTTACAAGTTCGGACAAGAAGAAGAAAC------ATA 159067 ||| || || | | | | || || ||||| |||| ||||| || ||| Sbjct 54054 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 53997 Query 159068 TAATATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAA 159127 | ||| || || || |||||||| || | || |||||||||||||| ||| ||||| Sbjct 53996 GAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAA 53937 Query 159128 CAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTG 159168 |||||| ||||| || || |||||| | ||||| ||||||| Sbjct 53936 CAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896 >seq9 Length=34148863 Score = 143 bits (158), Expect = 3e-29 Identities = 158/208 (76%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 158742 GGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTGCTGTA 158801 |||||||| || ||||| ||| |||||||| || || || || || || ||||||| Sbjct 1506953 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 1507012 Query 158802 TTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCT 158861 ||| | |||| ||| | |||||||| |||||| |||| ||||||| | || || ||| Sbjct 1507013 TTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCT 1507072 Query 158862 GGTACTTTTAACTACATGC-TTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTT 158920 | | ||| |||| |||| ||||||| | ||||||||||||||||||||||| | | | Sbjct 1507073 AGCA-TTTCAACTTCATGTATTGTATTTCTGGCAGAACACAACATCCTTATGCATCTGGT 1507131 Query 158921 CCATATGCTCGGTGTTGCTGGGGTATTC 158948 || ||| | ||||| |||| |||||| Sbjct 1507132 TCACATGTTAGGTGTAACTGGTGTATTC 1507159 >seq10 Length=33665772 Score = 125 bits (138), Expect = 8e-24 Identities = 234/341 (69%), Gaps = 21/341 (6%) Strand=Plus/Plus Query 158838 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 158897 |||| ||||||| | || || ||||||||||| |||| |||| |||||||||| |||||| Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954 Query 158898 CACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTG--CTGGGGTATTCGGTGGAT 158955 ||||||||||||||||| | || || ||| | ||||| | |||| |||||||| Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 4333009 Query 158956 CTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTG 159015 | || | |||||||||| | || | || | || | | |||| |||| Sbjct 4333010 CCCT----AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065 Query 159016 AAACAGAGTCACAG--AACTATGGTTACAAGTTCGGACAAGAAGAAGAAAC------ATA 159067 ||| || || | | | | || || ||||| |||| ||||| || ||| Sbjct 4333066 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 4333123 Query 159068 TAATATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAA 159127 | || || | || |||||||| || | || |||| || |||||| ||| ||||| Sbjct 4333124 GAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAA 4333183 Query 159128 CAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTG 159168 |||||| ||| | || |||||| | ||||| ||||||| Sbjct 4333184 CAACTCGACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224 >seq1382 Length=172696 Score = 122 bits (134), Expect = 1e-22 Identities = 237/345 (69%), Gaps = 19/345 (6%) Strand=Plus/Plus Query 158896 AACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCT--GGGGTATTCGGTGG 158953 ||||||||||||||||||| || || | ||| | ||| | ||| || |||||||| || Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554 Query 158954 ATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGA 159012 || || ||| |||||||||||| | || || || | | | || | ||||| | Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCA 123613 Query 159013 CTGAAACAGAGTCA-CAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACA------ 159065 |||||| || || || | | ||||||| ||||| |||||||||| || | Sbjct 123614 CTGAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTA 123672 Query 159066 ---TATAATATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCA 159122 || | ||| || || || |||||||| || | || |||||| ||||||| ||| Sbjct 123673 CAATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGT 123732 Query 159123 TTCAACAACTCCCG----TTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCAT 159178 ||||||||||| || ||| | || ||| | || || ||||| ||| | || || Sbjct 123733 TTCAACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTAT 123792 Query 159179 CTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAA 159223 |||| |||| || | || | |||||||| |||||||| || Sbjct 123793 CTGGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 >seq1042 Length=564079 Score = 114 bits (126), Expect = 1e-20 Identities = 99/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 158820 GGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATG 158879 |||||||| | | || |||| |||||||| || |||||||||||||| ||| |||| Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801 Query 158880 CTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCT 158939 |||||||||| || || |||||||||||||||||||| || | ||| | ||| ||||| Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCT 550741 Query 158940 GGG 158942 ||| Sbjct 550740 GGG 550738 >seq4 Length=30051516 Score = 104 bits (114), Expect = 3e-17 Identities = 119/159 (75%), Gaps = 6/159 (4%) Strand=Plus/Plus Query 159204 ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 159263 |||||||| |||||||| || |||||||| |||||||| ||| | |||| |||||||| Sbjct 1282771 ACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTCAGGGT 1282830 Query 159264 CGTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGT----ATGGAAGT 159319 ||||| | || || ||| ||| | | || ||||| ||| ||| |||||||| Sbjct 1282831 CGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATGGAAGT 1282888 Query 159320 TATGCATGAGCGTAACGCACACAACTTCCCACTCGACCT 159358 || ||||| ||||| || || |||||||| | ||||| Sbjct 1282889 AATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927 >seq1035 Length=594915 Score = 102 bits (112), Expect = 9e-17 Identities = 302/460 (66%), Gaps = 48/460 (10%) Strand=Plus/Plus Query 160373 TTTGGGGTGGCAGCAATCTTTAGAT---TCCTGTTGTTCCTTCAAGGATTTCACAACTGG 160429 ||||| || ||||| || ||| ||| |||| | |||| || | | | || ||| Sbjct 236996 TTTGGTGTAGCAGCTATATTTCGATGAATCCTCTGATTCC---AACGGTGGAATAATTGG 237052 Query 160430 ACGCTTAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGT 160489 ||| | ||||| || |||||||||||||| || || |||| | || ||||| | Sbjct 237053 ACGTTGAACCCTTTGAATATGATGGGAGTTTA-GGAGTATTAGGCGCTGCTCTGCTATGC 237111 Query 160490 GCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACC 160549 || || ||||| ||||| | ||||| | | |||||||| | |||||||| Sbjct 237112 GCTATTCATGGT----CTGTATAAAACACTTTATTCGAAGATGGTAACGGTGCAAATACA 237167 Query 160550 T----TTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAA 160605 | || || ||| | | || || | |||||||||||||| ||||||||||| || Sbjct 237168 TACTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTAA 237227 Query 160606 CCGCTTCTGGTCGCAGATC-----TTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCAT 160660 ||| || ||||| || ||| || || |||| ||||| || || || |||| Sbjct 237228 CCGTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGGC----- 237282 Query 160661 TTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCAGTATT--GGCATTA--T 160716 | ||||| ||||| | || | ||| | |||| |||| || | || | Sbjct 237283 ---CTTATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGGTAGTAAGT 237339 Query 160717 TGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGA 160776 ||||| ||||| ||||| ||||| || || ||||| || | |||| || Sbjct 237340 CGGTCTGGCTCTGAATCTACGTGCCTATGACTTCGT--TTCCCG---TTAG-------GA 237387 Query 160777 AGATCCAGAATTTGAGACCTT----CTACACCAAGAACAT 160812 |||||| ||||| || || || |||||||||||| || Sbjct 237388 AGATCCGGAATTGGATACTTTATACCTACACCAAGAATAT 237427 >seq6 Length=34899179 Score = 82.4 bits (90), Expect = 8e-11 Identities = 101/136 (74%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 160116 ATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAAC 160175 ||||| | | || || ||||||||||| || ||||| ||||| |||| |||| Sbjct 26461273 ATTCTTTGTTGCTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGGTG---CCAAT 26461217 Query 160176 TTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGC 160235 | || || || |||| |||||| || ||||||||||| ||||| ||||| || || ||| Sbjct 26461216 TAGGCGGTCTGTGGACTTTTGTTGCTCTCCATGGTGCTTTCGCACTAATAGGCTT-ATGT 26461158 Query 160236 TCCGTCAGTTTGAACT 160251 | ||||| || |||| Sbjct 26461157 TACGTCAATTCTAACT 26461142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552423469926720