Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq9 161 1e-34 seq1382 122 1e-22 seq1063 122 1e-22 seq1042 114 2e-20 seq10 114 2e-20 seq1035 93.3 5e-14 >seq9 Length=34148863 Score = 161 bits (178), Expect = 1e-34 Identities = 177/233 (76%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 179199 TGAGTGGGAACTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGC 179258 ||||| |||||| || | ||| ||||||||||| ||||| ||||||||| || || Sbjct 1506928 TGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGC 1506987 Query 179259 ACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTC 179318 || || || ||||| | ||| || ||| | |||| ||| | |||||||| |||||| Sbjct 1506988 TCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTC 1507047 Query 179319 TGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATG-CTTGTATTCCAAGCAG 179377 ||||| ||||||| | || || ||| | | ||| |||| |||| ||||||| | |||| Sbjct 1507048 TGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTATTGTATTTCTGGCAG 1507106 Query 179378 AACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTC 179430 ||||||||||||||||||| | | | || ||| | ||||| |||| |||||| Sbjct 1507107 AACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGTGTATTC 1507159 >seq1382 Length=172696 Score = 122 bits (134), Expect = 1e-22 Identities = 238/345 (69%), Gaps = 19/345 (6%) Strand=Plus/Plus Query 179378 AACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCT--GGGGTATTCGGTGG 179435 ||||||||||||||||||| || || | ||| | ||| | ||| || |||||||| || Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554 Query 179436 ATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAA 179494 || || ||| ||||||||| || | || || || | | ||| || | ||||| | Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCA 123613 Query 179495 CTGAGACAGAGTCA-CAGAACTATGGTTATAAGTTCGGACAAGAAGAAG----AGACCTA 179549 |||| | || || || | | ||||| | ||||| |||||||||| |||| || Sbjct 123614 CTGAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTA 123672 Query 179550 TAACA-----TCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCC 179604 || | | || || || ||||| || || | || |||||| |||||||||| Sbjct 123673 CAATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGT 123732 Query 179605 TTTAACAACTCACGCT----CTTTGCACTTCTTCCTTGCTGCGTGGCCGGTTGTCGGCAT 179660 || |||||||| |||| ||| || ||| | || || ||||| ||| | || || Sbjct 123733 TTCAACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTAT 123792 Query 179661 CTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTCAACCTCAA 179705 |||| |||| ||| | || | |||||||| ||||||||||| Sbjct 123793 CTGGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 >seq1063 Length=431445 Score = 122 bits (134), Expect = 1e-22 Identities = 236/344 (69%), Gaps = 31/344 (9%) Strand=Plus/Minus Query 179320 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 179379 |||| ||||||| |||| || ||||||||||| ||| |||| ||||||| | |||||| Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166 Query 179380 CACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTG--CTGGGGTATTCGGTGGAT 179437 ||||||||||||||||| | || || ||| | ||||| | |||| |||||||| Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 54111 Query 179438 CTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTT-----CGTGAAAC 179492 | || | ||||||| || || || ||| | |||||| | |||| Sbjct 54110 CCCT----AGTACTATGCATGG----TTCCTT-GGTCCACTCTTGTTTCATCAGGGAAAT 54060 Query 179493 AACTGAGACAGAGTCACAG--AACTATGGTTATAAGTTCGGACAAGAAGAAGAGAC---- 179546 ||||| | || || | | | | || | ||||| |||| |||||||| Sbjct 54059 CACTGAAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTA 54002 Query 179547 --CTATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCC 179604 || | || || || || ||||| || || | || ||||||||||||||||| Sbjct 54001 CAATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGT 53942 Query 179605 TTTAACAACTCACGCTCTTTGCACTTCTTCCTTGCTGCGTGGCC 179648 || |||||||| || ||||| || |||||| | ||||||||||| Sbjct 53941 TTCAACAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCC 53898 >seq1042 Length=564079 Score = 114 bits (126), Expect = 2e-20 Identities = 99/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 179302 GGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATG 179361 |||||||| | | || |||| |||||||| || |||||||||||||| ||| |||| Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801 Query 179362 CTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCT 179421 |||||||||| || || |||||||||||||||||||| || | ||| | ||| ||||| Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCT 550741 Query 179422 GGG 179424 ||| Sbjct 550740 GGG 550738 >seq10 Length=33665772 Score = 114 bits (126), Expect = 2e-20 Identities = 95/115 (83%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 179320 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 179379 |||| ||||||| | || || ||||||||||| |||| |||| |||||||||| |||||| Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954 Query 179380 CACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTG--CTGGGGTATTCGG 179432 ||||||||||||||||| | || || ||| | ||||| | |||| |||||||| Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG 4333009 >seq1035 Length=594915 Score = 93.3 bits (102), Expect = 5e-14 Identities = 261/396 (66%), Gaps = 30/396 (8%) Strand=Plus/Plus Query 180494 TTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTTTCTTCAGGGTTTCCACAACTGGAC 180553 |||||| |||||||| || ||| ||| | |||| | || | | | || ||||| Sbjct 236995 TTTTGGTGTAGCAGCTATATTTCGATGAATCCTCTGATTCCAACGGTGGAATAATTGGAC 237054 Query 180554 CCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAGC 180613 | ||||| || |||||||||||||| || || |||| | || |||||| || Sbjct 237055 GTTGAACCCTTTGAATATGATGGGAGTTTA-GGAGTATTAGGCGCTGCTCTGCTATGCGC 237113 Query 180614 AATCCATGGCGTAACTGTGGAGAACACACTGTAT--GAAGATGGAGAACAAGCAAACACC 180671 || ||||| |||| | || ||||| ||| |||||||| | ||||| || Sbjct 237114 TATTCATGGT----CTGT--ATAAAACACTTTATTCGAAGATGGTAACGGTGCAAATACA 237167 Query 180672 T----TTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAA 180727 | || || ||| | |||| |||| || || ||||| || ||||||||||| || Sbjct 237168 TACTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTAA 237227 Query 180728 CCGCTTCTGGTCGCAGATC-----TTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCAT 180782 ||| || ||||| || ||| || || |||| ||||| || || || |||| Sbjct 237228 CCGTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGGC----- 237282 Query 180783 TTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATT--GGCATTA--T 180838 | ||||| ||||| | || | ||| |||||| ||||| || | || | Sbjct 237283 ---CTTATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGGTAGTAAGT 237339 Query 180839 TGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGT 180874 ||||| ||||| || || ||||| || || ||||| Sbjct 237340 CGGTCTGGCTCTGAATCTACGTGCCTATGACTTCGT 237375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610274220217920