Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_027132.1
Length=190768
Score E
Sequences producing significant alignments: (Bits) Value
seq9 161 1e-34
seq1382 122 1e-22
seq1063 122 1e-22
seq1042 114 2e-20
seq10 114 2e-20
seq1035 93.3 5e-14
>seq9
Length=34148863
Score = 161 bits (178), Expect = 1e-34
Identities = 177/233 (76%), Gaps = 2/233 (1%)
Strand=Plus/Plus
Query 179199 TGAGTGGGAACTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGC 179258
||||| |||||| || | ||| ||||||||||| ||||| ||||||||| || ||
Sbjct 1506928 TGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGC 1506987
Query 179259 ACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTC 179318
|| || || ||||| | ||| || ||| | |||| ||| | |||||||| ||||||
Sbjct 1506988 TCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTC 1507047
Query 179319 TGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATG-CTTGTATTCCAAGCAG 179377
||||| ||||||| | || || ||| | | ||| |||| |||| ||||||| | ||||
Sbjct 1507048 TGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTATTGTATTTCTGGCAG 1507106
Query 179378 AACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTC 179430
||||||||||||||||||| | | | || ||| | ||||| |||| ||||||
Sbjct 1507107 AACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGTGTATTC 1507159
>seq1382
Length=172696
Score = 122 bits (134), Expect = 1e-22
Identities = 238/345 (69%), Gaps = 19/345 (6%)
Strand=Plus/Plus
Query 179378 AACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCT--GGGGTATTCGGTGG 179435
||||||||||||||||||| || || | ||| | ||| | ||| || |||||||| ||
Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554
Query 179436 ATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAA 179494
|| || ||| ||||||||| || | || || || | | ||| || | ||||| |
Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCA 123613
Query 179495 CTGAGACAGAGTCA-CAGAACTATGGTTATAAGTTCGGACAAGAAGAAG----AGACCTA 179549
|||| | || || || | | ||||| | ||||| |||||||||| |||| ||
Sbjct 123614 CTGAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTA 123672
Query 179550 TAACA-----TCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCC 179604
|| | | || || || ||||| || || | || |||||| ||||||||||
Sbjct 123673 CAATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGT 123732
Query 179605 TTTAACAACTCACGCT----CTTTGCACTTCTTCCTTGCTGCGTGGCCGGTTGTCGGCAT 179660
|| |||||||| |||| ||| || ||| | || || ||||| ||| | || ||
Sbjct 123733 TTCAACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTAT 123792
Query 179661 CTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTCAACCTCAA 179705
|||| |||| ||| | || | |||||||| |||||||||||
Sbjct 123793 CTGGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837
>seq1063
Length=431445
Score = 122 bits (134), Expect = 1e-22
Identities = 236/344 (69%), Gaps = 31/344 (9%)
Strand=Plus/Minus
Query 179320 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 179379
|||| ||||||| |||| || ||||||||||| ||| |||| ||||||| | ||||||
Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166
Query 179380 CACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTG--CTGGGGTATTCGGTGGAT 179437
||||||||||||||||| | || || ||| | ||||| | |||| ||||||||
Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 54111
Query 179438 CTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTT-----CGTGAAAC 179492
| || | ||||||| || || || ||| | |||||| | ||||
Sbjct 54110 CCCT----AGTACTATGCATGG----TTCCTT-GGTCCACTCTTGTTTCATCAGGGAAAT 54060
Query 179493 AACTGAGACAGAGTCACAG--AACTATGGTTATAAGTTCGGACAAGAAGAAGAGAC---- 179546
||||| | || || | | | | || | ||||| |||| ||||||||
Sbjct 54059 CACTGAAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTA 54002
Query 179547 --CTATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCC 179604
|| | || || || || ||||| || || | || |||||||||||||||||
Sbjct 54001 CAATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGT 53942
Query 179605 TTTAACAACTCACGCTCTTTGCACTTCTTCCTTGCTGCGTGGCC 179648
|| |||||||| || ||||| || |||||| | |||||||||||
Sbjct 53941 TTCAACAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCC 53898
>seq1042
Length=564079
Score = 114 bits (126), Expect = 2e-20
Identities = 99/123 (80%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 179302 GGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATG 179361
|||||||| | | || |||| |||||||| || |||||||||||||| ||| ||||
Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801
Query 179362 CTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCT 179421
|||||||||| || || |||||||||||||||||||| || | ||| | ||| |||||
Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCT 550741
Query 179422 GGG 179424
|||
Sbjct 550740 GGG 550738
>seq10
Length=33665772
Score = 114 bits (126), Expect = 2e-20
Identities = 95/115 (83%), Gaps = 2/115 (2%)
Strand=Plus/Plus
Query 179320 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 179379
|||| ||||||| | || || ||||||||||| |||| |||| |||||||||| ||||||
Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954
Query 179380 CACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTG--CTGGGGTATTCGG 179432
||||||||||||||||| | || || ||| | ||||| | |||| ||||||||
Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG 4333009
>seq1035
Length=594915
Score = 93.3 bits (102), Expect = 5e-14
Identities = 261/396 (66%), Gaps = 30/396 (8%)
Strand=Plus/Plus
Query 180494 TTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTTTCTTCAGGGTTTCCACAACTGGAC 180553
|||||| |||||||| || ||| ||| | |||| | || | | | || |||||
Sbjct 236995 TTTTGGTGTAGCAGCTATATTTCGATGAATCCTCTGATTCCAACGGTGGAATAATTGGAC 237054
Query 180554 CCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAGC 180613
| ||||| || |||||||||||||| || || |||| | || |||||| ||
Sbjct 237055 GTTGAACCCTTTGAATATGATGGGAGTTTA-GGAGTATTAGGCGCTGCTCTGCTATGCGC 237113
Query 180614 AATCCATGGCGTAACTGTGGAGAACACACTGTAT--GAAGATGGAGAACAAGCAAACACC 180671
|| ||||| |||| | || ||||| ||| |||||||| | ||||| ||
Sbjct 237114 TATTCATGGT----CTGT--ATAAAACACTTTATTCGAAGATGGTAACGGTGCAAATACA 237167
Query 180672 T----TTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAA 180727
| || || ||| | |||| |||| || || ||||| || ||||||||||| ||
Sbjct 237168 TACTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTAA 237227
Query 180728 CCGCTTCTGGTCGCAGATC-----TTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCAT 180782
||| || ||||| || ||| || || |||| ||||| || || || ||||
Sbjct 237228 CCGTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGGC----- 237282
Query 180783 TTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATT--GGCATTA--T 180838
| ||||| ||||| | || | ||| |||||| ||||| || | || |
Sbjct 237283 ---CTTATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGGTAGTAAGT 237339
Query 180839 TGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGT 180874
||||| ||||| || || ||||| || || |||||
Sbjct 237340 CGGTCTGGCTCTGAATCTACGTGCCTATGACTTCGT 237375
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 610274220217920
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