Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq6 122 1e-22
seq11 116 5e-21
seq9 96.9 5e-15
>seq6
Length=34899179
Score = 122 bits (134), Expect = 1e-22
Identities = 163/224 (73%), Gaps = 2/224 (1%)
Strand=Plus/Plus
Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809
|||||| ||||| | || | ||||| | ||| | || || ||||| |||| ||||||
Sbjct 13941175 TCCTCCTTGATCAACATAACGAGCAGTATCATTGAACACCCTTAGCATTGGAACAATACC 13941234
Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869
||||||| | |||||||| ||| |||||||| ||| |||| || || || || |||
Sbjct 13941235 ATTAGATGTTCCATTTGTCCCACGGATATAACTGCCTGTTGCTCGGATGTTGTGAACAGA 13941294
Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929
| ||| |||||||| || || |||| |||||| || | || ||||||||
Sbjct 13941295 AACACCAATTCCTCCAGCTGACTTGCTTATTATAGCACACTCCTTAAGCGTATCATATAT 13941354
Query 69930 ACCCTCTATGCTATCATCTATCATG-TTAAGAAGAAAACAGCTA 69972
||||| |||||||| ||| ||||| || ||| |||||||||
Sbjct 13941355 CCCCTCAATGCTATCTTCTTTCATGCATATCAAG-AAACAGCTA 13941397
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576
|| |||||||| |||||| |||| | | ||| ||| |||||| || || | |||||||
Sbjct 13939967 TCAAATTCATCACCCCAACAATCAGCAAGTCCCGGAGCTTCATTAGGGCAAAACAATGAC 13940026
Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAG 69636
|| ||| | || ||||| || |||||| ||||| ||||||||||| || |||
Sbjct 13940027 CATTGTCCATTACTCTGAACTCTTTCCATAAAGAGATCAGGAATCCAAAGGGCATAAAAC 13940086
Query 69637 AGATCTCTGGTTCTATTTTCTTC 69659
|| || || | ||||| |||||
Sbjct 13940087 AGGTCCCTAGCTCTATGCTCTTC 13940109
>seq11
Length=25514024
Score = 116 bits (128), Expect = 5e-21
Identities = 148/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810
||||| ||||| | || | ||||| | ||| | || || ||||| |||| |||||||
Sbjct 20144381 CCTCCTTGATCAACATAACGAGCAGTATCATTGAACACCCTTAGCATGGGAACAATACCA 20144322
Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870
|| ||| | |||||||| ||| |||||||||||| |||| || || || || |||
Sbjct 20144321 TTGGATGTTCCATTTGTACCACGGATATAACTTCCTGTTGCACGGATGTTGTGAACAGAA 20144262
Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930
| || |||||||| || || |||| |||||| |||| || ||||||||
Sbjct 20144261 ACGCCAATTCCTCCAGCTGACTTGCTTATTATAGCACACTCCTTCAGAGTATCATATATT 20144202
Query 69931 CCCTCTATGCTATCATCTATCATG 69954
||||| |||||||| ||| |||||
Sbjct 20144201 CCCTCAATGCTATCTTCTTTCATG 20144178
>seq9
Length=34148863
Score = 96.9 bits (106), Expect = 5e-15
Identities = 117/157 (75%), Gaps = 2/157 (1%)
Strand=Plus/Minus
Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675
|||||||||||| ||||| |||||||| || | || | ||||| || || |||||
Sbjct 1096993 GCAGGCGAAGTCGCAATGAAGGCCCTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAG 1096934
Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734
|| ||||| || || ||||| ||||||||||| || || ||| || || ||||| ||||
Sbjct 1096933 CCCCGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATAGC-GCAGAAGGAGCCAGAGAAGA 1096875
Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTC 39771
|||| || || || || || || |||| || |||
Sbjct 1096874 AGATTCCCTCGACACAGGCGAAGGCGACAATTCGCTC 1096838
Score = 87.8 bits (96), Expect = 2e-12
Identities = 115/157 (73%), Gaps = 2/157 (1%)
Strand=Plus/Minus
Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675
|||||||||||| || || |||||||| || | || | |||||| || || |||||
Sbjct 33079564 GCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAG 33079505
Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGA 39734
|| ||||| || || || || |||||||| || || || ||| ||| | || || ||||
Sbjct 33079504 GCCGGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATAGC-GCAGAAGGAACCGGAGAAGA 33079446
Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTC 39771
||||||| || || || || ||||| || | |||
Sbjct 33079445 AGATGCCCTCGACGCAGGCGAAGGCAACGAGGCGCTC 33079409
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686846471612760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |