Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq6 122 1e-22 seq11 116 5e-21 seq9 96.9 5e-15 >seq6 Length=34899179 Score = 122 bits (134), Expect = 1e-22 Identities = 163/224 (73%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | ||||| | ||| | || || ||||| |||| |||||| Sbjct 13941175 TCCTCCTTGATCAACATAACGAGCAGTATCATTGAACACCCTTAGCATTGGAACAATACC 13941234 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | |||||||| ||| |||||||| ||| |||| || || || || ||| Sbjct 13941235 ATTAGATGTTCCATTTGTCCCACGGATATAACTGCCTGTTGCTCGGATGTTGTGAACAGA 13941294 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| |||||||| || || |||| |||||| || | || |||||||| Sbjct 13941295 AACACCAATTCCTCCAGCTGACTTGCTTATTATAGCACACTCCTTAAGCGTATCATATAT 13941354 Query 69930 ACCCTCTATGCTATCATCTATCATG-TTAAGAAGAAAACAGCTA 69972 ||||| |||||||| ||| ||||| || ||| ||||||||| Sbjct 13941355 CCCCTCAATGCTATCTTCTTTCATGCATATCAAG-AAACAGCTA 13941397 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 || |||||||| |||||| |||| | | ||| ||| |||||| || || | ||||||| Sbjct 13939967 TCAAATTCATCACCCCAACAATCAGCAAGTCCCGGAGCTTCATTAGGGCAAAACAATGAC 13940026 Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAG 69636 || ||| | || ||||| || |||||| ||||| ||||||||||| || ||| Sbjct 13940027 CATTGTCCATTACTCTGAACTCTTTCCATAAAGAGATCAGGAATCCAAAGGGCATAAAAC 13940086 Query 69637 AGATCTCTGGTTCTATTTTCTTC 69659 || || || | ||||| ||||| Sbjct 13940087 AGGTCCCTAGCTCTATGCTCTTC 13940109 >seq11 Length=25514024 Score = 116 bits (128), Expect = 5e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| ||||| | || | ||||| | ||| | || || ||||| |||| ||||||| Sbjct 20144381 CCTCCTTGATCAACATAACGAGCAGTATCATTGAACACCCTTAGCATGGGAACAATACCA 20144322 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | |||||||| ||| |||||||||||| |||| || || || || ||| Sbjct 20144321 TTGGATGTTCCATTTGTACCACGGATATAACTTCCTGTTGCACGGATGTTGTGAACAGAA 20144262 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || |||||||| || || |||| |||||| |||| || |||||||| Sbjct 20144261 ACGCCAATTCCTCCAGCTGACTTGCTTATTATAGCACACTCCTTCAGAGTATCATATATT 20144202 Query 69931 CCCTCTATGCTATCATCTATCATG 69954 ||||| |||||||| ||| ||||| Sbjct 20144201 CCCTCAATGCTATCTTCTTTCATG 20144178 >seq9 Length=34148863 Score = 96.9 bits (106), Expect = 5e-15 Identities = 117/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| ||||| |||||||| || | || | ||||| || || ||||| Sbjct 1096993 GCAGGCGAAGTCGCAATGAAGGCCCTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAG 1096934 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734 || ||||| || || ||||| ||||||||||| || || ||| || || ||||| |||| Sbjct 1096933 CCCCGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATAGC-GCAGAAGGAGCCAGAGAAGA 1096875 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTC 39771 |||| || || || || || || |||| || ||| Sbjct 1096874 AGATTCCCTCGACACAGGCGAAGGCGACAATTCGCTC 1096838 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || |||||||| || | || | |||||| || || ||||| Sbjct 33079564 GCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAG 33079505 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGA 39734 || ||||| || || || || |||||||| || || || ||| ||| | || || |||| Sbjct 33079504 GCCGGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATAGC-GCAGAAGGAACCGGAGAAGA 33079446 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTC 39771 ||||||| || || || || ||||| || | ||| Sbjct 33079445 AGATGCCCTCGACGCAGGCGAAGGCAACGAGGCGCTC 33079409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686846471612760