Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 >seq6 Length=34899179 Score = 104 bits (114), Expect = 2e-17 Identities = 283/429 (66%), Gaps = 6/429 (1%) Strand=Plus/Plus Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTT--TGCGC 43913 || |||||||| || |||||| || ||| || || ||| || || ||||| Sbjct 4328314 GCCTTTTTTGCCGCCTCCGACGGCATCGTCCTCGAGAACCTGGCCGCCCGCTTCATGCGC 4328373 Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 || || ||| | || || || || || || || || || ||||| || || || | Sbjct 4328374 --GACGTCCAACTCCCCGAGGCCCGCGCCTTCTACGGTTTCCAGATTGCAATCGAGAACA 4328431 Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC 44033 | || || || |||||| ||||| | |||||||||||||| || ||| |||| Sbjct 4328432 TCCACTCCGAGATGTACTCCCTTCTACTCGATACGTACATCAAGGACCCCGACGTGAAGT 4328491 Query 44034 ATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCC 44093 ||| | || | ||||| || || || ||||| | | || || || ||||| | Sbjct 4328492 TTCGCCTCTTCCACGCGATCGACACCGTCCCTGCCGTCGCCCGGAAGGCCGAATGGGCTC 4328551 Query 44094 TTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGG 44153 | ||||||| | || | || || | || ||||| ||||| || || || | Sbjct 4328552 TCCAATGGATTGAGTCTTCCGGCTCCTTCGCCGAGCGACTCGTCGCCTTCGCCTGCGTCG 4328611 Query 44154 AAGGCATTTTCTTTTCAGGATCGTT-TGCGGCCATATTTTGGTTAAAGAAACGAGGTTTG 44212 | ||||| || || || || || || ||| ||||| || ||| | ||||| || || | Sbjct 4328612 AGGGCATCTTTTTCTCCGGCTCCTTCTGC-GCCATCTTCTGGCTCAAGAAGCGCGGCCTC 4328670 Query 44213 ATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGAT 44272 ||||| || | || || || || ||| | || ||||| || ||| | || ||||| Sbjct 4328671 ATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGCCTTCACTGCGAC 4328730 Query 44273 TTTGCTTGC 44281 ||||||||| Sbjct 4328731 TTTGCTTGC 4328739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397420837440295