Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq6 104 2e-17
>seq6
Length=34899179
Score = 104 bits (114), Expect = 2e-17
Identities = 283/429 (66%), Gaps = 6/429 (1%)
Strand=Plus/Plus
Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTT--TGCGC 43913
|| |||||||| || |||||| || ||| || || ||| || || |||||
Sbjct 4328314 GCCTTTTTTGCCGCCTCCGACGGCATCGTCCTCGAGAACCTGGCCGCCCGCTTCATGCGC 4328373
Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973
|| || ||| | || || || || || || || || || ||||| || || || |
Sbjct 4328374 --GACGTCCAACTCCCCGAGGCCCGCGCCTTCTACGGTTTCCAGATTGCAATCGAGAACA 4328431
Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC 44033
| || || || |||||| ||||| | |||||||||||||| || ||| ||||
Sbjct 4328432 TCCACTCCGAGATGTACTCCCTTCTACTCGATACGTACATCAAGGACCCCGACGTGAAGT 4328491
Query 44034 ATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCC 44093
||| | || | ||||| || || || ||||| | | || || || ||||| |
Sbjct 4328492 TTCGCCTCTTCCACGCGATCGACACCGTCCCTGCCGTCGCCCGGAAGGCCGAATGGGCTC 4328551
Query 44094 TTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGG 44153
| ||||||| | || | || || | || ||||| ||||| || || || |
Sbjct 4328552 TCCAATGGATTGAGTCTTCCGGCTCCTTCGCCGAGCGACTCGTCGCCTTCGCCTGCGTCG 4328611
Query 44154 AAGGCATTTTCTTTTCAGGATCGTT-TGCGGCCATATTTTGGTTAAAGAAACGAGGTTTG 44212
| ||||| || || || || || || ||| ||||| || ||| | ||||| || || |
Sbjct 4328612 AGGGCATCTTTTTCTCCGGCTCCTTCTGC-GCCATCTTCTGGCTCAAGAAGCGCGGCCTC 4328670
Query 44213 ATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGAT 44272
||||| || | || || || || ||| | || ||||| || ||| | || |||||
Sbjct 4328671 ATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGCCTTCACTGCGAC 4328730
Query 44273 TTTGCTTGC 44281
|||||||||
Sbjct 4328731 TTTGCTTGC 4328739
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397420837440295
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |