Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq8 107 2e-18 seq3 98.7 8e-16 seq6 82.4 6e-11 >seq8 Length=35439739 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||| || |||||| || | |||| ||||||||||||| ||||| Sbjct 1223261 GTGGACTCCTTCTGAATGTTATAGTCGGCCAAGGTGCGGCCGTCTTCGAGCTGCTTACCA 1223320 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| | ||| || || || || | ||||| || || ||||||| || Sbjct 1223321 GCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTGGATCTTGGCCTTA 1223380 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | || |||||| ||||| || || | ||||| || || ||| Sbjct 1223381 ACATTGTCGATGGTGTCGGAGGATTCAACCTCTAGGGTGATGGTCTTGCCAGTGAGGGTT 1223440 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 1223441 TTCACGAAGATCTGCAT 1223457 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 ||| || || || ||||| ||||||||| | | | || | || || ||||| || || Sbjct 26900838 CGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCCAGCTGCTTTCC 26900897 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | ||||||||||| ||||||||||| | ||||| || || |||||| || Sbjct 26900898 GGCGAAGATGAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTT 26900957 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 || | | || | ||||| | | ||| || || || || || | || |||||||| || Sbjct 26900958 CACGTTGTCAATCGTGTCCGACGATTCCACCTCGAGGGTGATCGTCTTCCCCGTCAGCGT 26901017 Query 27230 TTTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 26901018 CTTCACGAAGATCTGCAT 26901035 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||| ||| | || || || || ||||| || |||||| || | |||| | || ||| Sbjct 1222306 ACCAGATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGCCAAGGTGCGGCCATCCTCG 1222365 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || ||||| | ||||| | ||| || ||||| || | ||||| || || | Sbjct 1222366 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGG 1222425 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | | || | ||||| | | || || || || || || | ||| Sbjct 1222426 ATCTTGGCCTTAACGTTGTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTCTTG 1222485 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || ||||| ||||||||||| |||||| Sbjct 1222486 CCGGTGAGAGTCTTCACAAAGATCTGCATA 1222515 >seq3 Length=30470407 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || ||||||||||| | | ||||| | || |||||||| || ||| Sbjct 5991005 GTGGACTCCTTCTGGATATTGTAGTCCGCGAGGGTGCGCCCATCCTCGAGCTGCTTCCCG 5991064 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| ||||| || || ||||| | ||||| ||||| ||||||| ||| Sbjct 5991065 GCAAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTC 5991124 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || || | || ||||| ||||| Sbjct 5991125 ACGTTGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATCGTCTTCCCCGTGAGAGTC 5991184 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 5991185 TTCACGAAGATCTGCAT 5991201 >seq6 Length=34899179 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||| | || | |||| || | || || || || || || || ||||| Sbjct 13154771 GCCACCGCGGAGACGAAGGACCAGGTGAAGAGTGGATTCCTTCTGGATGTTATAGTCTGC 13154712 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || ||||| | || |||||||| ||||| || | || || | |||||| || || || Sbjct 13154711 CAGTGTGCGCCCATCCTCGAGCTGCTTACCCGCAAAGATTAGCCTCTGTTGGTCTGGTGG 13154652 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || ||||| |||| | || | |||||| | | ||||| Sbjct 13154651 GATTCCCTCCTTGTCCTGTATCTTTGCCTTCACATTGTCGATAGTGTCCGAGCTCTCAAC 13154592 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | || ||||| || ||||||||||| |||||||| Sbjct 13154591 CTCCAGAGTGATGGTCTTCCCCGTGAGGGTTTTCACAAAAATTTGCAT 13154544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424896806452008