Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq8 107 2e-18
seq3 98.7 8e-16
seq6 82.4 6e-11
>seq8
Length=35439739
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || ||||| || |||||| || | |||| ||||||||||||| |||||
Sbjct 1223261 GTGGACTCCTTCTGAATGTTATAGTCGGCCAAGGTGCGGCCGTCTTCGAGCTGCTTACCA 1223320
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | ||||| | ||| || || || || | ||||| || || ||||||| ||
Sbjct 1223321 GCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTGGATCTTGGCCTTA 1223380
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | || | ||||| | || |||||| ||||| || || | ||||| || || |||
Sbjct 1223381 ACATTGTCGATGGTGTCGGAGGATTCAACCTCTAGGGTGATGGTCTTGCCAGTGAGGGTT 1223440
Query 27231 TTCACAAAGATTTGCAT 27247
||||| ||||| |||||
Sbjct 1223441 TTCACGAAGATCTGCAT 1223457
Score = 105 bits (116), Expect = 6e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109
||| || || || ||||| ||||||||| | | | || | || || ||||| || ||
Sbjct 26900838 CGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCCAGCTGCTTTCC 26900897
Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169
|||| | ||||||||||| ||||||||||| | ||||| || || |||||| ||
Sbjct 26900898 GGCGAAGATGAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTT 26900957
Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229
|| | | || | ||||| | | ||| || || || || || | || |||||||| ||
Sbjct 26900958 CACGTTGTCAATCGTGTCCGACGATTCCACCTCGAGGGTGATCGTCTTCCCCGTCAGCGT 26901017
Query 27230 TTTCACAAAGATTTGCAT 27247
||||| ||||| |||||
Sbjct 26901018 CTTCACGAAGATCTGCAT 26901035
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
|||| ||| | || || || || ||||| || |||||| || | |||| | || |||
Sbjct 1222306 ACCAGATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGCCAAGGTGCGGCCATCCTCG 1222365
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
||||| || ||||| | ||||| | ||| || ||||| || | ||||| || || |
Sbjct 1222366 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGG 1222425
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
|||||| || | | | || | ||||| | | || || || || || || | |||
Sbjct 1222426 ATCTTGGCCTTAACGTTGTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTCTTG 1222485
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| || ||||| ||||||||||| ||||||
Sbjct 1222486 CCGGTGAGAGTCTTCACAAAGATCTGCATA 1222515
>seq3
Length=30470407
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || || ||||||||||| | | ||||| | || |||||||| || |||
Sbjct 5991005 GTGGACTCCTTCTGGATATTGTAGTCCGCGAGGGTGCGCCCATCCTCGAGCTGCTTCCCG 5991064
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
|| | ||||| ||||| || || ||||| | ||||| ||||| ||||||| |||
Sbjct 5991065 GCAAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTC 5991124
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | | || | ||||| | | || || || || || || | || ||||| |||||
Sbjct 5991125 ACGTTGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATCGTCTTCCCCGTGAGAGTC 5991184
Query 27231 TTCACAAAGATTTGCAT 27247
||||| ||||| |||||
Sbjct 5991185 TTCACGAAGATCTGCAT 5991201
>seq6
Length=34899179
Score = 82.4 bits (90), Expect = 6e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079
||| ||||| | || | |||| || | || || || || || || || |||||
Sbjct 13154771 GCCACCGCGGAGACGAAGGACCAGGTGAAGAGTGGATTCCTTCTGGATGTTATAGTCTGC 13154712
Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139
|| ||||| | || |||||||| ||||| || | || || | |||||| || || ||
Sbjct 13154711 CAGTGTGCGCCCATCCTCGAGCTGCTTACCCGCAAAGATTAGCCTCTGTTGGTCTGGTGG 13154652
Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199
| ||||| || || ||||| |||| | || | |||||| | | |||||
Sbjct 13154651 GATTCCCTCCTTGTCCTGTATCTTTGCCTTCACATTGTCGATAGTGTCCGAGCTCTCAAC 13154592
Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| ||||| || | || ||||| || ||||||||||| ||||||||
Sbjct 13154591 CTCCAGAGTGATGGTCTTCCCCGTGAGGGTTTTCACAAAAATTTGCAT 13154544
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424896806452008
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |