Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 1e-13 >seq6 Length=34899179 Score = 93.3 bits (102), Expect = 1e-13 Identities = 130/180 (72%), Gaps = 3/180 (2%) Strand=Plus/Plus Query 443693 TCTCAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGG 443752 ||||| |||| |||||| || || || || || ||||| ||| | || || ||| Sbjct 15336855 TCTCA--TTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGAGTCTTCTTCTCCGG 15336912 Query 443753 CAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTA 443812 | ||| || ||||||||||| | || ||||| || || |||| ||||| ||||| Sbjct 15336913 CTCCTTCTGCG-CCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCGGGTCTCACCTTCT 15336971 Query 443813 GTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACA 443872 ||||| || ||| || |||||||| | || |||||||||||||| || ||||||| Sbjct 15336972 CAAACGAGCTCATCTCCCGTGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACA 15337031 Score = 87.8 bits (96), Expect = 6e-12 Identities = 124/173 (72%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 ||||| ||||||||| ||||| || || ||||| || | || || |||| ||| Sbjct 4328577 CTTCGCCGAGCGACTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTTTTCTCCGGCTCCTT 4328636 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 || ||||||||||| | || ||||| || || |||| |||||| ||||| |||| Sbjct 4328637 CTGCG-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCACCTTCTCCAACG 4328695 Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTAC 443871 | || ||| || |||||||| | || |||||||| || || || || ||| Sbjct 4328696 AGCTCATCTCCCGTGACGAGGGCCTTCACTGCGACTTTGCTTGCCTCCTTTAC 4328748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588188275321255