Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq9 140 4e-28 seq7 132 6e-26 seq6 129 7e-25 seq1022 123 3e-23 seq4 89.7 6e-13 seq10 84.2 3e-11 >seq9 Length=34148863 Score = 140 bits (154), Expect = 4e-28 Identities = 240/343 (70%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 122481 GAGGAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 122540 ||| || || || | ||| |||| ||||||| | ||| ||| |||||| |||| Sbjct 33079738 GAGCAGGCGGTCGGCCACGAACTCGATGTACTGGCTCATGAGATCAACGTTCATCCCGAC 33079679 Query 122541 GAG-GTTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCA 122599 ||| | ||| ||||||||||| ||| |||| | ||| || ||||| || || | Sbjct 33079678 GAGAGCGACA-GGGAGTGCGTCGCAGACGAACTCCCGCTCGATGTCAACAGCGTCCGCAA 33079620 Query 122600 CGATGGCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAA-AGTCTTGAAGAGCTCCACG 122658 |||| || ||| | ||| | | | || || | || || | |||| | Sbjct 33079619 CGATTGCCCGGACCGCTTCCTCGGACAGCTTGTTGCGGAGGAGGCT-GTAGAGGAGGCAG 33079561 Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 || || || |||||| ||||| || ||||| || ||||| || |||||| || || Sbjct 33079560 GCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGGCCG 33079501 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 |||||||| || || ||||| | ||| | ||||||||||| || |||||||||||||| Sbjct 33079500 GGCATGAGGCCGCGTTTCTTGAGCCAGAAGATAGCGCAGAAGGAACCGGAGAAGAAGATG 33079441 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGC 122821 ||||| || || || || |||| ||||| ||||||||||||| Sbjct 33079440 CCCTCGACGCAGGCGAAGGCAACGAGGCGCTCGGCGAAGGAGC 33079398 Score = 120 bits (132), Expect = 4e-22 Identities = 117/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730 || || ||||| || ||||| ||||| || || |||||| || || |||||||| || Sbjct 1096977 TGAAGGCCCTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCCG 1096918 Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 122790 |||||||| | |||| | ||||||||||| || || ||||||||||| ||||| ||||| Sbjct 1096917 CGCTTCTTGAGCCAAAAGATAGCGCAGAAGGAGCCAGAGAAGAAGATTCCCTCGACACAG 1096858 Query 122791 GCAAACGCAAAAAGGCGTTCGGCGAAGGAGC 122821 || || || | || || ||||| || |||| Sbjct 1096857 GCGAAGGCGACAATTCGCTCGGCAAACGAGC 1096827 Score = 84.2 bits (92), Expect = 3e-11 Identities = 209/315 (66%), Gaps = 2/315 (1%) Strand=Plus/Minus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTG-G 11598 || ||||||||||| || | | ||||| || || || || |||||||| || | | Sbjct 28872018 AACCCATCCATCTCTGTCAAGAGCTGATTGATGGTCTGCTCCCTCTCATCGTTGCCACCG 28871959 Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 | | | || || | | ||| | |||||||||||||| ||||| ||||| ||||| || Sbjct 28871958 CCAAGC-CCGGCCCCCCTCTGCCTTCCCACCGCATCAATTTCATCGATGAACACAATGCA 28871900 Query 11659 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAAC 11718 ||| || | || | || || | ||| || ||||| || |||||||| || Sbjct 28871899 AGGTGCCTTAGCCTTCGCTTTCTCGAATAAATCCCGGACCCTCGACGCCCCCACACCCAC 28871840 Query 11719 AAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGC 11778 |||| |||||| || | | || | |||| || ||| || || | || ||||| Sbjct 28871839 GAACAGCTCCACGAACTCGGACGCCGCGCACGAGAAGAAGGGCACGCCGGCCTCTCCCGC 28871780 Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCG 11838 | |||||||| || || || || || || || || ||| | | ||| ||| Sbjct 28871779 CACAGCTCGGGCCAGCAGCGTTTTGCCGGTGCCGGGTGGGCCCACCAAGAGGCAACCTTT 28871720 Query 11839 GGGGATCTTGGCACC 11853 ||||||||| || || Sbjct 28871719 GGGGATCTTCGCCCC 28871705 >seq7 Length=28617404 Score = 132 bits (146), Expect = 6e-26 Identities = 251/365 (69%), Gaps = 6/365 (2%) Strand=Plus/Minus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 ||||| ||||| || ||||| | || ||| || || || | || || || || ||| Sbjct 3465426 TCAAATCGACCAGGCCGAAGTAAAGCAGAATCCAGAATGTCTGCACGGTTGGTCGCTGCA 3465367 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 || || | || ||||| | |||||||||||||| || || | | ||||| | Sbjct 3465366 ATGACAATTATACCAGTATTTCCTTCAAAGCCATCCATTTCAGTCAAAAGCTGATTGAGA 3465307 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTGCTTGCCCACCG 11630 || |||||||| ||||||||| || | | | | || | | | |||| | || || | Sbjct 3465306 GTCTGTTCTCTTTCATCATTTCCT--CCTCCAATTCCTGTTCCTCTTTGCCTACCAACGG 3465249 Query 11631 CATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGAT 11690 ||||||||||||||| || |||||||| || ||| || ||| | | || || | Sbjct 3465248 CATCAATCTCATCAACAAACACAATACAAGGAGCATTCTCTTTGGCCTTCTTGAAAAGGT 3465189 Query 11691 CGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACT 11750 | ||||| | | ||||| |||||||||||||| || ||||| | | | || | | Sbjct 3465188 CACGAACTCGTGAAGCACCGACACCAACAAACATTTCTACAAATTCAGATCCTGA-AATT 3465130 Query 11751 G-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTA 11809 | || ||||||||| || |||||| || || || ||| || || |||||||| || Sbjct 3465129 GAGAAAAATGGGACACCTGCTTCACCAGCAATTGCCTTGGCAAGCAGAGTCTTTCCAGTT 3465070 Query 11810 CCTGG 11814 ||||| Sbjct 3465069 CCTGG 3465065 >seq6 Length=34899179 Score = 129 bits (142), Expect = 7e-25 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| ||||| || ||||| || || || ||||||||| ||||| |||||||| || Sbjct 15337006 GTGGAGGCCCTCGTCACGGGAGATGAGCTCGTTTGAGAAGGTGAGACCCGGCATGAGGCC 15336947 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || |||||||| || ||||||||||||| ||||| || || Sbjct 15336946 TCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGACTCCCTCGACGCA 15336887 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAG 122820 || || |||| ||||| |||||||| ||| Sbjct 15336886 GGCGAAGGCAACGAGGCGCTCGGCGAATGAG 15336856 Score = 123 bits (136), Expect = 3e-23 Identities = 150/204 (74%), Gaps = 3/204 (1%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| || ||||| || ||||| || || || || |||||| ||||| Sbjct 4328735 GCAAAGTCGCAGTGAAGGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACCG 4328676 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 |||||||| || |||||||| | ||| | || |||||||| || |||||||| ||||| Sbjct 4328675 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAAAAGATG 4328616 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAAC 122838 ||||| || || || || || | || || ||||||||||||| || | |||| | Sbjct 4328615 CCCTCGACGCAGGCGAAGGCGACGAGTCGCTCGGCGAAGGAGCCGGA---AGACTCAATC 4328559 Query 122839 CATTTCATTGCCCATTTCGCCTTC 122862 |||| | ||||||| |||||| Sbjct 4328558 CATTGGAGAGCCCATTCGGCCTTC 4328535 >seq1022 Length=749713 Score = 123 bits (136), Expect = 3e-23 Identities = 275/407 (68%), Gaps = 12/407 (3%) Strand=Plus/Plus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 ||||| || || || ||||| | || ||| || || || |||| || || || || Sbjct 665413 TCAAATCGCCCAGGTCGAAGCAAAGCAGAATCTAGAATGTCTGCGCGGTTGGTTGCTGCG 665472 Query 11513 ATAACCACAATGCCAGTCTCATTG---TCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 || || | || || || |||| |||||||||||||||||||| | | |||||| Sbjct 665473 ATCACAATTATACCTGT---ATTGCCTTCAAAGCCATCCATCTCGGTCAAAAGCTGATTA 665529 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTGCTTGCCCA 11627 | || ||||| || ||||||||| || | | | | || | | | |||| | || | Sbjct 665530 AGAGTCTGTTCCCTTTCATCATTTCCT--CCTCCGATTCCTGTTCCTCTTTGCCTTCCAA 665587 Query 11628 CCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 11687 | |||||||||||||||| || ||||| || || ||| || ||| | | || | Sbjct 665588 CAGCATCAATCTCATCAACAAACACAATGCAAGGAGCATTCTCTTTGGCCTTCTTGAAAA 665647 Query 11688 GATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGC 11747 |||| ||||| | ||||| |||||||||||||| || ||||| | | | || Sbjct 665648 GATCACGAACTCGAGAAGCACCAACACCAACAAACATTTCTACAAATTCAGATCCGGA-A 665706 Query 11748 ACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCC 11806 | || || ||||||||| || ||||| || || || || || | |||||| || Sbjct 665707 ATTGAGAAAAATGGGACACCTGCCTCACCAGCAATTGCCTTAGCAAGCAAGGTCTTCCCA 665766 Query 11807 GTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 || ||||| ||| | |||||| | ||| ||||| |||||| Sbjct 665767 GTTCCTGGAGGACCAACAAGAAGGACACCTTTAGGGATACGGGCACC 665813 >seq4 Length=30051516 Score = 89.7 bits (98), Expect = 6e-13 Identities = 191/283 (67%), Gaps = 2/283 (1%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTG-G 11598 || ||||||||||| || | | ||||| || || || || ||||||||||| | | Sbjct 3938698 AACCCATCCATCTCCGTCAAGAGCTGATTGATAGTCTGCTCCCTCTCATCATTGCCACCG 3938757 Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 | | | ||||| | | ||| | |||||||||||||| ||||| ||||| ||||| || Sbjct 3938758 CCAAGC-CCAGCTCCTCTCTGCCTTCCCACCGCATCAATTTCATCGATGAAAACAATGCA 3938816 Query 11659 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAAC 11718 ||| || | || | ||||| ||||| || ||||| || ||||| || || Sbjct 3938817 CGGTGCCTTAGCCTTTGCCTTCTCAAACAGATCCCGGACCCTCGACGCCCCCACTCCCAC 3938876 Query 11719 AAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGC 11778 ||| | |||||| || | | || | ||| || ||| ||||| | || || || Sbjct 3938877 AAATAGCTCCACGAACTCGGACGCTGCACACGAGAAGAACGGGACTCCGGCCTCTCCTGC 3938936 Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCC 11821 | || | || || || ||||| || ||||| ||| |||| Sbjct 3938937 CACCGCCCTCGCCAGCAGCGTCTTGCCGGTACCCGGCGGACCC 3938979 >seq10 Length=33665772 Score = 84.2 bits (92), Expect = 3e-11 Identities = 160/233 (69%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 11501 TTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGT 11560 ||||| || ||||| || | || ||| | ||| ||| |||||||| || |||||| Sbjct 32123019 TTAGTAGCAGCAATTACAATAACTCCACTATCACCACTAAAACCATCCATTTCAGTGAGT 32122960 Query 11561 AATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTT 11618 | ||||| | ||| |||||||| ||||||||| || | | | | || | | | | Sbjct 32122959 AGCTGATTCAGTGTCTGTTCTCTTTCATCATTTCCT--CCTCCAATTCCTGTTCCCCTCT 32122902 Query 11619 GCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG----GTTGATTTTCGCGG 11674 || | || || ||||||||||||||||| || || | |||| ||| || || Sbjct 32122901 GCCTTCCTACTGCATCAATCTCATCAATAAATACCAGGCATGGAGAGTTCATCTT----T 32122846 Query 11675 GCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTC 11727 || | | ||| ||||| || || || || ||||| || ||||||||||| Sbjct 32122845 GCCTTGTTAAACAGATCCCGCACTCTCGAAGCCCCCACTCCGACAAACATCTC 32122793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627975013946400