Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq9 140 4e-28
seq7 132 6e-26
seq6 129 7e-25
seq1022 123 3e-23
seq4 89.7 6e-13
seq10 84.2 3e-11
>seq9
Length=34148863
Score = 140 bits (154), Expect = 4e-28
Identities = 240/343 (70%), Gaps = 4/343 (1%)
Strand=Plus/Minus
Query 122481 GAGGAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 122540
||| || || || | ||| |||| ||||||| | ||| ||| |||||| ||||
Sbjct 33079738 GAGCAGGCGGTCGGCCACGAACTCGATGTACTGGCTCATGAGATCAACGTTCATCCCGAC 33079679
Query 122541 GAG-GTTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCA 122599
||| | ||| ||||||||||| ||| |||| | ||| || ||||| || || |
Sbjct 33079678 GAGAGCGACA-GGGAGTGCGTCGCAGACGAACTCCCGCTCGATGTCAACAGCGTCCGCAA 33079620
Query 122600 CGATGGCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAA-AGTCTTGAAGAGCTCCACG 122658
|||| || ||| | ||| | | | || || | || || | |||| |
Sbjct 33079619 CGATTGCCCGGACCGCTTCCTCGGACAGCTTGTTGCGGAGGAGGCT-GTAGAGGAGGCAG 33079561
Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718
|| || || |||||| ||||| || ||||| || ||||| || |||||| || ||
Sbjct 33079560 GCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGGCCG 33079501
Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778
|||||||| || || ||||| | ||| | ||||||||||| || ||||||||||||||
Sbjct 33079500 GGCATGAGGCCGCGTTTCTTGAGCCAGAAGATAGCGCAGAAGGAACCGGAGAAGAAGATG 33079441
Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGC 122821
||||| || || || || |||| ||||| |||||||||||||
Sbjct 33079440 CCCTCGACGCAGGCGAAGGCAACGAGGCGCTCGGCGAAGGAGC 33079398
Score = 120 bits (132), Expect = 4e-22
Identities = 117/151 (77%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730
|| || ||||| || ||||| ||||| || || |||||| || || |||||||| ||
Sbjct 1096977 TGAAGGCCCTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCCG 1096918
Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 122790
|||||||| | |||| | ||||||||||| || || ||||||||||| ||||| |||||
Sbjct 1096917 CGCTTCTTGAGCCAAAAGATAGCGCAGAAGGAGCCAGAGAAGAAGATTCCCTCGACACAG 1096858
Query 122791 GCAAACGCAAAAAGGCGTTCGGCGAAGGAGC 122821
|| || || | || || ||||| || ||||
Sbjct 1096857 GCGAAGGCGACAATTCGCTCGGCAAACGAGC 1096827
Score = 84.2 bits (92), Expect = 3e-11
Identities = 209/315 (66%), Gaps = 2/315 (1%)
Strand=Plus/Minus
Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTG-G 11598
|| ||||||||||| || | | ||||| || || || || |||||||| || | |
Sbjct 28872018 AACCCATCCATCTCTGTCAAGAGCTGATTGATGGTCTGCTCCCTCTCATCGTTGCCACCG 28871959
Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658
| | | || || | | ||| | |||||||||||||| ||||| ||||| ||||| ||
Sbjct 28871958 CCAAGC-CCGGCCCCCCTCTGCCTTCCCACCGCATCAATTTCATCGATGAACACAATGCA 28871900
Query 11659 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAAC 11718
||| || | || | || || | ||| || ||||| || |||||||| ||
Sbjct 28871899 AGGTGCCTTAGCCTTCGCTTTCTCGAATAAATCCCGGACCCTCGACGCCCCCACACCCAC 28871840
Query 11719 AAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGC 11778
|||| |||||| || | | || | |||| || ||| || || | || |||||
Sbjct 28871839 GAACAGCTCCACGAACTCGGACGCCGCGCACGAGAAGAAGGGCACGCCGGCCTCTCCCGC 28871780
Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCG 11838
| |||||||| || || || || || || || || ||| | | ||| |||
Sbjct 28871779 CACAGCTCGGGCCAGCAGCGTTTTGCCGGTGCCGGGTGGGCCCACCAAGAGGCAACCTTT 28871720
Query 11839 GGGGATCTTGGCACC 11853
||||||||| || ||
Sbjct 28871719 GGGGATCTTCGCCCC 28871705
>seq7
Length=28617404
Score = 132 bits (146), Expect = 6e-26
Identities = 251/365 (69%), Gaps = 6/365 (2%)
Strand=Plus/Minus
Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512
||||| ||||| || ||||| | || ||| || || || | || || || || |||
Sbjct 3465426 TCAAATCGACCAGGCCGAAGTAAAGCAGAATCCAGAATGTCTGCACGGTTGGTCGCTGCA 3465367
Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572
|| || | || ||||| | |||||||||||||| || || | | ||||| |
Sbjct 3465366 ATGACAATTATACCAGTATTTCCTTCAAAGCCATCCATTTCAGTCAAAAGCTGATTGAGA 3465307
Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTGCTTGCCCACCG 11630
|| |||||||| ||||||||| || | | | | || | | | |||| | || || |
Sbjct 3465306 GTCTGTTCTCTTTCATCATTTCCT--CCTCCAATTCCTGTTCCTCTTTGCCTACCAACGG 3465249
Query 11631 CATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGAT 11690
||||||||||||||| || |||||||| || ||| || ||| | | || || |
Sbjct 3465248 CATCAATCTCATCAACAAACACAATACAAGGAGCATTCTCTTTGGCCTTCTTGAAAAGGT 3465189
Query 11691 CGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACT 11750
| ||||| | | ||||| |||||||||||||| || ||||| | | | || | |
Sbjct 3465188 CACGAACTCGTGAAGCACCGACACCAACAAACATTTCTACAAATTCAGATCCTGA-AATT 3465130
Query 11751 G-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTA 11809
| || ||||||||| || |||||| || || || ||| || || |||||||| ||
Sbjct 3465129 GAGAAAAATGGGACACCTGCTTCACCAGCAATTGCCTTGGCAAGCAGAGTCTTTCCAGTT 3465070
Query 11810 CCTGG 11814
|||||
Sbjct 3465069 CCTGG 3465065
>seq6
Length=34899179
Score = 129 bits (142), Expect = 7e-25
Identities = 119/151 (79%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729
|||||| ||||| || ||||| || || || ||||||||| ||||| |||||||| ||
Sbjct 15337006 GTGGAGGCCCTCGTCACGGGAGATGAGCTCGTTTGAGAAGGTGAGACCCGGCATGAGGCC 15336947
Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789
|||||||| | ||| | || |||||||| || ||||||||||||| ||||| || ||
Sbjct 15336946 TCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGACTCCCTCGACGCA 15336887
Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAG 122820
|| || |||| ||||| |||||||| |||
Sbjct 15336886 GGCGAAGGCAACGAGGCGCTCGGCGAATGAG 15336856
Score = 123 bits (136), Expect = 3e-23
Identities = 150/204 (74%), Gaps = 3/204 (1%)
Strand=Plus/Minus
Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718
||||| || ||| || ||||| || ||||| || || || || |||||| |||||
Sbjct 4328735 GCAAAGTCGCAGTGAAGGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACCG 4328676
Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778
|||||||| || |||||||| | ||| | || |||||||| || |||||||| |||||
Sbjct 4328675 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAAAAGATG 4328616
Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAAC 122838
||||| || || || || || | || || ||||||||||||| || | |||| |
Sbjct 4328615 CCCTCGACGCAGGCGAAGGCGACGAGTCGCTCGGCGAAGGAGCCGGA---AGACTCAATC 4328559
Query 122839 CATTTCATTGCCCATTTCGCCTTC 122862
|||| | ||||||| ||||||
Sbjct 4328558 CATTGGAGAGCCCATTCGGCCTTC 4328535
>seq1022
Length=749713
Score = 123 bits (136), Expect = 3e-23
Identities = 275/407 (68%), Gaps = 12/407 (3%)
Strand=Plus/Plus
Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512
||||| || || || ||||| | || ||| || || || |||| || || || ||
Sbjct 665413 TCAAATCGCCCAGGTCGAAGCAAAGCAGAATCTAGAATGTCTGCGCGGTTGGTTGCTGCG 665472
Query 11513 ATAACCACAATGCCAGTCTCATTG---TCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569
|| || | || || || |||| |||||||||||||||||||| | | ||||||
Sbjct 665473 ATCACAATTATACCTGT---ATTGCCTTCAAAGCCATCCATCTCGGTCAAAAGCTGATTA 665529
Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTGCTTGCCCA 11627
| || ||||| || ||||||||| || | | | | || | | | |||| | || |
Sbjct 665530 AGAGTCTGTTCCCTTTCATCATTTCCT--CCTCCGATTCCTGTTCCTCTTTGCCTTCCAA 665587
Query 11628 CCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 11687
| |||||||||||||||| || ||||| || || ||| || ||| | | || |
Sbjct 665588 CAGCATCAATCTCATCAACAAACACAATGCAAGGAGCATTCTCTTTGGCCTTCTTGAAAA 665647
Query 11688 GATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGC 11747
|||| ||||| | ||||| |||||||||||||| || ||||| | | | ||
Sbjct 665648 GATCACGAACTCGAGAAGCACCAACACCAACAAACATTTCTACAAATTCAGATCCGGA-A 665706
Query 11748 ACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCC 11806
| || || ||||||||| || ||||| || || || || || | |||||| ||
Sbjct 665707 ATTGAGAAAAATGGGACACCTGCCTCACCAGCAATTGCCTTAGCAAGCAAGGTCTTCCCA 665766
Query 11807 GTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853
|| ||||| ||| | |||||| | ||| ||||| ||||||
Sbjct 665767 GTTCCTGGAGGACCAACAAGAAGGACACCTTTAGGGATACGGGCACC 665813
>seq4
Length=30051516
Score = 89.7 bits (98), Expect = 6e-13
Identities = 191/283 (67%), Gaps = 2/283 (1%)
Strand=Plus/Plus
Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTG-G 11598
|| ||||||||||| || | | ||||| || || || || ||||||||||| | |
Sbjct 3938698 AACCCATCCATCTCCGTCAAGAGCTGATTGATAGTCTGCTCCCTCTCATCATTGCCACCG 3938757
Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658
| | | ||||| | | ||| | |||||||||||||| ||||| ||||| ||||| ||
Sbjct 3938758 CCAAGC-CCAGCTCCTCTCTGCCTTCCCACCGCATCAATTTCATCGATGAAAACAATGCA 3938816
Query 11659 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAAC 11718
||| || | || | ||||| ||||| || ||||| || ||||| || ||
Sbjct 3938817 CGGTGCCTTAGCCTTTGCCTTCTCAAACAGATCCCGGACCCTCGACGCCCCCACTCCCAC 3938876
Query 11719 AAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGC 11778
||| | |||||| || | | || | ||| || ||| ||||| | || || ||
Sbjct 3938877 AAATAGCTCCACGAACTCGGACGCTGCACACGAGAAGAACGGGACTCCGGCCTCTCCTGC 3938936
Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCC 11821
| || | || || || ||||| || ||||| ||| ||||
Sbjct 3938937 CACCGCCCTCGCCAGCAGCGTCTTGCCGGTACCCGGCGGACCC 3938979
>seq10
Length=33665772
Score = 84.2 bits (92), Expect = 3e-11
Identities = 160/233 (69%), Gaps = 12/233 (5%)
Strand=Plus/Minus
Query 11501 TTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGT 11560
||||| || ||||| || | || ||| | ||| ||| |||||||| || ||||||
Sbjct 32123019 TTAGTAGCAGCAATTACAATAACTCCACTATCACCACTAAAACCATCCATTTCAGTGAGT 32122960
Query 11561 AATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTT 11618
| ||||| | ||| |||||||| ||||||||| || | | | | || | | | |
Sbjct 32122959 AGCTGATTCAGTGTCTGTTCTCTTTCATCATTTCCT--CCTCCAATTCCTGTTCCCCTCT 32122902
Query 11619 GCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG----GTTGATTTTCGCGG 11674
|| | || || ||||||||||||||||| || || | |||| ||| || ||
Sbjct 32122901 GCCTTCCTACTGCATCAATCTCATCAATAAATACCAGGCATGGAGAGTTCATCTT----T 32122846
Query 11675 GCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTC 11727
|| | | ||| ||||| || || || || ||||| || |||||||||||
Sbjct 32122845 GCCTTGTTAAACAGATCCCGCACTCTCGAAGCCCCCACTCCGACAAACATCTC 32122793
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627975013946400
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