Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq9 150 2e-31 seq6 143 3e-29 seq4 87.8 2e-12 >seq9 Length=34148863 Score = 150 bits (166), Expect = 2e-31 Identities = 247/348 (71%), Gaps = 6/348 (2%) Strand=Plus/Minus Query 129838 GAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGAT 129897 ||| || || || | ||| |||| ||||||| ||| || |||||| |||| Sbjct 33079738 GAGCAGGCGGTCGGCCACGAACTCGATGTACTGGCTCATGAGATCAACGTTCATCCCGAC 33079679 Query 129898 GAG-GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCA 129956 ||| | ||| ||||| ||||| ||| |||| || ||| ||||| ||||| ||| | Sbjct 33079678 GAGAGCGACA-GGGAGTGCGTCGCAGACGAACTCCCGCTCGATGTCAACAGCGTCCGCAA 33079620 Query 129957 CGATGGCGTGAATGGTCTCCGTGC-CAGGTCTATTGCGCAA-AGTCTTGAAGAGTTCCAC 130014 |||| || | | | ||| | ||| | | ||||| | || || | |||| Sbjct 33079619 CGATTGCCCGGACCGCTTCCTCGGACAGCT-TGTTGCGGAGGAGGCT-GTAGAGGAGGCA 33079562 Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 ||| || || |||||| |||||||| |||||||||||||| || |||||| || || Sbjct 33079561 GGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGGCC 33079502 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 |||||||| || || ||||| | |||||| || || || || || || ||||||||||| Sbjct 33079501 GGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATAGCGCAGAAGGAACCGGAGAAGAAGAT 33079442 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGA 130182 ||||| || || ||||| |||| ||| ||||| || ||||||| ||| Sbjct 33079441 GCCCTCGACGCAGGCGAAGGCAACGAGGCGCTCGGCGAAGGAGCCGGA 33079394 Score = 143 bits (158), Expect = 3e-29 Identities = 170/230 (74%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 130087 || || ||||||||||||||||| || || ||||||||| || || |||||||| || Sbjct 1096977 TGAAGGCCCTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCCG 1096918 Query 130088 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 130147 |||||||| | ||| || || || || || ||||||||||||||||| ||||| ||||| Sbjct 1096917 CGCTTCTTGAGCCAAAAGATAGCGCAGAAGGAGCCAGAGAAGAAGATTCCCTCGACACAG 1096858 Query 130148 GCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCC 130207 ||||| || | | ||||| ||||| |||| ||| | |||| ||| || ||| Sbjct 1096857 GCGAAGGCGACAATTCGCTCGGCAAACGAGCCGGA---AGATTCAATCCAGCGCAGGGCC 1096801 Query 130208 CACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 130257 || | |||||| ||| | | ||||| |||| ||| ||| ||||| Sbjct 1096800 CAGTCGGCCTTTCGGGCGACAGAGGGGACCGTCTCGATGGCTCGGAAGAG 1096751 Score = 96.9 bits (106), Expect = 4e-15 Identities = 189/277 (68%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA-GG 14211 || ||||||||||| |||||||| ||||||||||| || || | ||||| || || | Sbjct 28872018 AACCCATCCATCTCTGTCAAGAGCTGATTGATGGTCTGCTCCCTCTCATCGTTGCCACCG 28871959 Query 14212 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 14271 | | | || || | | ||| | || || || ||||||||||||||||| || || || Sbjct 28871958 CCAAGC-CCGGCCCCCCTCTGCCTTCCCACCGCATCAATTTCATCGATGAACACAATGCA 28871900 Query 14272 TGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCAC 14331 ||| || | || || || | ||| || || ||| || || |||||||| Sbjct 28871899 AGGTGCCTTAGCCTTCGCTTTCTCGAATAAATCCCGGACCCTCGACGCCCCCACACCCAC 28871840 Query 14332 AAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGC 14391 |||| |||||| || | || || | || || |||||| ||| | || ||||| Sbjct 28871839 GAACAGCTCCACGAACTCGGACGCCGCGCACGAGAAGAAGGGCACGCCGGCCTCTCCCGC 28871780 Query 14392 GATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 | |||||||| || || || || || || || ||| Sbjct 28871779 CACAGCTCGGGCCAGCAGCGTTTTGCCGGTGCCGGGT 28871743 >seq6 Length=34899179 Score = 143 bits (158), Expect = 3e-29 Identities = 132/167 (79%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| || |||||||||||||||||||| || || |||||| ||||| Sbjct 4328735 GCAAAGTCGCAGTGAAGGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACCG 4328676 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 |||||||| || |||||||| | |||||| || || || || ||||| ||||| ||||| Sbjct 4328675 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAAAAGATG 4328616 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGA 130182 ||||| || || ||||| || | ||| ||||| || ||||||| ||| Sbjct 4328615 CCCTCGACGCAGGCGAAGGCGACGAGTCGCTCGGCGAAGGAGCCGGA 4328569 Score = 141 bits (156), Expect = 1e-28 Identities = 122/151 (81%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 |||||| |||||||||||||||||||| || || |||||| ||||| |||||||| || Sbjct 15337006 GTGGAGGCCCTCGTCACGGGAGATGAGCTCGTTTGAGAAGGTGAGACCCGGCATGAGGCC 15336947 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| || || || || ||||| |||||||||| ||||| || || Sbjct 15336946 TCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGACTCCCTCGACGCA 15336887 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAG 130177 ||||| |||| ||| ||||| || || ||| Sbjct 15336886 GGCGAAGGCAACGAGGCGCTCGGCGAATGAG 15336856 >seq4 Length=30051516 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA-GG 14211 || ||||||||||| |||||||| |||||||| || || || | |||||||| || | Sbjct 3938698 AACCCATCCATCTCCGTCAAGAGCTGATTGATAGTCTGCTCCCTCTCATCATTGCCACCG 3938757 Query 14212 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 14271 | | | || || | | ||| | || || || |||||||||||||||||||| || || Sbjct 3938758 CCAAGC-CCAGCTCCTCTCTGCCTTCCCACCGCATCAATTTCATCGATGAAAACAATGCA 3938816 Query 14272 TGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCAC 14331 ||| || | || ||||| | ||| || || ||| || || || ||||| Sbjct 3938817 CGGTGCCTTAGCCTTTGCCTTCTCAAACAGATCCCGGACCCTCGACGCCCCCACTCCCAC 3938876 Query 14332 AAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGAC 14376 ||| | |||||| || | || || | ||| || ||| ||||| Sbjct 3938877 AAATAGCTCCACGAACTCGGACGCTGCACACGAGAAGAACGGGAC 3938921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618379084736040