Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq9 165 9e-36
seq6 159 4e-34
seq1022 143 3e-29
seq7 136 5e-27
seq4 105 8e-18
>seq9
Length=34148863
Score = 165 bits (182), Expect = 9e-36
Identities = 126/149 (85%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854
|| ||||| |||||| | |||| || || ||||| ||||| |||||||||||||| |||
Sbjct 1096829 TCGTTTGCCGAGCGAATTGTCGCCTTCGCCTGTGTCGAGGGAATCTTCTTCTCTGGCTCC 1096888
Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914
||||||||||| | ||||||||||||||| || |||||||| || ||| |||||| |||
Sbjct 1096889 TTCTGCGCTATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTCACCTTCTCGAAC 1096948
Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCA 94943
||||||||||| ||||||||||| || ||
Sbjct 1096949 GAGCTTATCTCCCGTGACGAGGGCCTTCA 1096977
Score = 149 bits (164), Expect = 7e-31
Identities = 123/150 (82%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854
||||| || ||||| ||| | || || || || || ||||| ||||||||||| ||||||
Sbjct 33079400 TCCTTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGTTCC 33079459
Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914
||||||||||| | ||||||||||| || || |||||||| || ||| ||||||||||
Sbjct 33079460 TTCTGCGCTATCTTCTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTCACCTTCTCCAAC 33079519
Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944
|| || ||||| || |||||||| ||||||
Sbjct 33079520 GAACTCATCTCCCGCGACGAGGGCCTCCAC 33079549
Score = 87.8 bits (96), Expect = 2e-12
Identities = 213/320 (67%), Gaps = 12/320 (4%)
Strand=Plus/Minus
Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTG 9671
|| ||||||||||||||||| || || || || || || |||| ||||| || | | |
Sbjct 28872018 AACCCATCCATCTCTGTCAAGAGCTGATTGATGGTCTGCTCCCTCTCATCGTTGCCACCG 28871959
Query 9672 GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731
|| | || || | | ||| ||||||| |||||||| ||||| ||||| || ||||
Sbjct 28871958 CCAAGC--CCGGCCCCCCTCTGCCTTCCCACCGCATCAATTTCATCGATGAACACAATGC 28871901
Query 9732 ATGGTTGATT----TTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 9787
| ||| || ||||| | || || | |||||| || | | || ||||||
Sbjct 28871900 AAGGTGCCTTAGCCTTCGCTTTC----TCGAATAAATCCCGGACCCTCGACGCCCCCACA 28871845
Query 9788 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9847
|| || |||| |||||| || | | || | || || |||||| || | ||
Sbjct 28871844 CCCACGAACAGCTCCACGAACTCGGACGCCGCGCACGAGAAGAAGGGCACGCCGGCCTCT 28871785
Query 9848 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 9907
||||| | |||||||| || || || || || || || || ||| | | |||| |
Sbjct 28871784 CCCGCCACAGCTCGGGCCAGCAGCGTTTTGCCGGTGCCGGGTGGGCCCACCAAGAGGCAA 28871725
Query 9908 CCTCGTGGAATCTTGGCGCC 9927
||| || ||||| || ||
Sbjct 28871724 CCTTTGGGGATCTTCGCCCC 28871705
>seq6
Length=34899179
Score = 159 bits (176), Expect = 4e-34
Identities = 132/161 (82%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854
||||| || ||||||||| |||| || || || || ||||| ||||| ||||| || |||
Sbjct 4328575 TCCTTCGCCGAGCGACTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTTTTCTCCGGCTCC 4328634
Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914
|||||||| || | |||||||||||||| || |||||||| |||||| ||||||||||
Sbjct 4328635 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCACCTTCTCCAAC 4328694
Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
||||| ||||| ||||||||||| || ||| || |||||
Sbjct 4328695 GAGCTCATCTCCCGTGACGAGGGCCTTCACTGCGACTTTGC 4328735
Score = 149 bits (164), Expect = 7e-31
Identities = 123/150 (82%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854
|| || || ||||| ||| | || || || || || ||||| |||||||||| || |||
Sbjct 15336857 TCATTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGAGTCTTCTTCTCCGGCTCC 15336916
Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914
|||||||| || | ||||||||||||||||| |||||||| |||||| |||||| |||
Sbjct 15336917 TTCTGCGCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCGGGTCTCACCTTCTCAAAC 15336976
Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944
||||| ||||| ||||||||||| ||||||
Sbjct 15336977 GAGCTCATCTCCCGTGACGAGGGCCTCCAC 15337006
>seq1022
Length=749713
Score = 143 bits (158), Expect = 3e-29
Identities = 269/388 (69%), Gaps = 8/388 (2%)
Strand=Plus/Plus
Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586
||||| || || || ||||| | || ||| || || || |||| || || || |||
Sbjct 665413 TCAAATCGCCCAGGTCGAAGCAAAGCAGAATCTAGAATGTCTGCGCGGTTGGTTGCTGCG 665472
Query 9587 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9646
|| |||| |||||||| | ||||| ||||||||||| |||||||| || |||| |
Sbjct 665473 ATCACAATTATACCTGTATTGCCTTCAAAGCCATCCATCTCGGTCAAAAGCTGATTAAGA 665532
Query 9647 GTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACGG 9704
|| ||||||| ||||||||| || | | | | || | | | |||| |||| || |
Sbjct 665533 GTCTGTTCCCTTTCATCATTTCCT--CCTCCGATTCCTGTTCCTCTTTGCCTTCCAACAG 665590
Query 9705 CATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTC-GCGAGCGACTTCAAAGAGA 9763
||||||||||||||| || || ||||| || ||| || | | ||| ||| |||
Sbjct 665591 CATCAATCTCATCAACAAACACAATGCAAGGAGCATTCTCTTTGGCCTTCTTGAAA-AGA 665649
Query 9764 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9823
|| || || || || || |||||||||||||| || ||||| | | ||||| ||
Sbjct 665650 TCACGAACTCGAGAAGCACCAACACCAACAAACATTTCTACAAATTCAGATCCGGAA-AT 665708
Query 9824 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9882
|| || || |||||| | ||||| ||||| || || || | ||||| || ||
Sbjct 665709 TGAGAAAAATGGGACACCTGCCTCACCAGCAATTGCCTTAGCAAGCAAGGTCTTCCCAGT 665768
Query 9883 ACCTGGCTTACCCGCGAGGAGGGCACCT 9910
||||| ||| | || ||| |||||
Sbjct 665769 TCCTGGAGGACCAACAAGAAGGACACCT 665796
>seq7
Length=28617404
Score = 136 bits (150), Expect = 5e-27
Identities = 307/452 (68%), Gaps = 12/452 (3%)
Strand=Plus/Minus
Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586
||||| ||||| || ||||| | || ||| || || || | || || ||||| ||
Sbjct 3465426 TCAAATCGACCAGGCCGAAGTAAAGCAGAATCCAGAATGTCTGCACGGTTGGTCGCTGCA 3465367
Query 9587 ATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9644
||||||| ||||| || ||| || |||| |||||||| || |||||||| || || |
Sbjct 3465366 ATGACAATTATACCAGTATTTCCTT--CAAAGCCATCCATTTCAGTCAAAAGCTGATTGA 3465309
Query 9645 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCAC 9702
||| ||||| | ||||||||| || | | | | || | | | |||| | || ||
Sbjct 3465308 GAGTCTGTTCTCTTTCATCATTTCCT--CCTCCAATTCCTGTTCCTCTTTGCCTACCAAC 3465251
Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGA-CTTCAAAGA 9761
||||||||||||||||| || || || || || ||| || || ||| ||| |
Sbjct 3465250 GGCATCAATCTCATCAACAAACACAATACAAGGAGCATTCTCTTTGGCCTTCTTGAAA-A 3465192
Query 9762 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9821
| || || || || || || |||||||||||||| || ||||| | | | |||
Sbjct 3465191 GGTCACGAACTCGTGAAGCACCGACACCAACAAACATTTCTACAAATTCAGATCCTGAA- 3465133
Query 9822 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9880
|||| || || |||||| | |||||| ||||| || ||| || |||||||| ||
Sbjct 3465132 ATTGAGAAAAATGGGACACCTGCTTCACCAGCAATTGCCTTGGCAAGCAGAGTCTTTCCA 3465073
Query 9881 GTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTAT 9940
|| ||||| ||| || ||| ||||| ||||| ||| || | || | ||
Sbjct 3465072 GTTCCTGGAGGACCTATTAGAAGGACACCTTTAGGAATACGGGCTCCCACTGCAGTGAAT 3465013
Query 9941 CTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972
||||| || | || || || || || | |||
Sbjct 3465012 CTCTCGGGCTTTTTCAGGAACTCAACTACTTC 3464981
>seq4
Length=30051516
Score = 105 bits (116), Expect = 8e-18
Identities = 256/384 (67%), Gaps = 14/384 (4%)
Strand=Plus/Plus
Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTG 9671
|| ||||||||||| ||||| || || || ||||| || |||| |||||||| | | |
Sbjct 3938698 AACCCATCCATCTCCGTCAAGAGCTGATTGATAGTCTGCTCCCTCTCATCATTGCCACCG 3938757
Query 9672 GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731
|| | ||||| | | ||| ||||||| |||||||| ||||| ||||| || ||||
Sbjct 3938758 CCAAGC--CCAGCTCCTCTCTGCCTTCCCACCGCATCAATTTCATCGATGAAAACAATGC 3938815
Query 9732 ATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 9791
| ||| || | || ||||| |||||||| || | | || ||||| || |
Sbjct 3938816 ACGGTGCCTTAGCCTTTGCCTTCTCAAACAGATCCCGGACCCTCGACGCCCCCACTCCCA 3938875
Query 9792 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9851
|||| | |||||| || | | || | ||| || ||| ||||| | || || |
Sbjct 3938876 CAAATAGCTCCACGAACTCGGACGCTGCACACGAGAAGAACGGGACTCCGGCCTCTCCTG 3938935
Query 9852 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 9911
| | || | || || || ||||| || ||||| ||| |||| | | ||| ||||
Sbjct 3938936 CCACCGCCCTCGCCAGCAGCGTCTTGCCGGTACCCGGCGGACCCACCAAGAGACAACCTT 3938995
Query 9912 GTGGAATCTTGGCGCCACTTCCAAAG-----TATCTCTCAGGTTGCTTAAGAAAATCCAC 9966
|||||||| |||| |||||| || | || || | ||| | || |||||
Sbjct 3938996 TAGGAATCTT--CGCC---CCCAAAGCCGTATACTTGTCCGGGTTCTTCAAGAAGTCCAC 3939050
Query 9967 AATTTCTTCCAATTCATCTTTGGC 9990
| ||| | ||| ||| ||||||
Sbjct 3939051 CACTTCCTGCAACTCAAGTTTGGC 3939074
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583207876373160
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