Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq9 165 9e-36 seq6 159 4e-34 seq1022 143 3e-29 seq7 136 5e-27 seq4 105 8e-18 >seq9 Length=34148863 Score = 165 bits (182), Expect = 9e-36 Identities = 126/149 (85%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || ||||| |||||| | |||| || || ||||| ||||| |||||||||||||| ||| Sbjct 1096829 TCGTTTGCCGAGCGAATTGTCGCCTTCGCCTGTGTCGAGGGAATCTTCTTCTCTGGCTCC 1096888 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 ||||||||||| | ||||||||||||||| || |||||||| || ||| |||||| ||| Sbjct 1096889 TTCTGCGCTATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTCACCTTCTCGAAC 1096948 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCA 94943 ||||||||||| ||||||||||| || || Sbjct 1096949 GAGCTTATCTCCCGTGACGAGGGCCTTCA 1096977 Score = 149 bits (164), Expect = 7e-31 Identities = 123/150 (82%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||| || ||||| ||| | || || || || || ||||| ||||||||||| |||||| Sbjct 33079400 TCCTTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGTTCC 33079459 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 ||||||||||| | ||||||||||| || || |||||||| || ||| |||||||||| Sbjct 33079460 TTCTGCGCTATCTTCTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTCACCTTCTCCAAC 33079519 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 || || ||||| || |||||||| |||||| Sbjct 33079520 GAACTCATCTCCCGCGACGAGGGCCTCCAC 33079549 Score = 87.8 bits (96), Expect = 2e-12 Identities = 213/320 (67%), Gaps = 12/320 (4%) Strand=Plus/Minus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTG 9671 || ||||||||||||||||| || || || || || || |||| ||||| || | | | Sbjct 28872018 AACCCATCCATCTCTGTCAAGAGCTGATTGATGGTCTGCTCCCTCTCATCGTTGCCACCG 28871959 Query 9672 GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 || | || || | | ||| ||||||| |||||||| ||||| ||||| || |||| Sbjct 28871958 CCAAGC--CCGGCCCCCCTCTGCCTTCCCACCGCATCAATTTCATCGATGAACACAATGC 28871901 Query 9732 ATGGTTGATT----TTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 9787 | ||| || ||||| | || || | |||||| || | | || |||||| Sbjct 28871900 AAGGTGCCTTAGCCTTCGCTTTC----TCGAATAAATCCCGGACCCTCGACGCCCCCACA 28871845 Query 9788 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9847 || || |||| |||||| || | | || | || || |||||| || | || Sbjct 28871844 CCCACGAACAGCTCCACGAACTCGGACGCCGCGCACGAGAAGAAGGGCACGCCGGCCTCT 28871785 Query 9848 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 9907 ||||| | |||||||| || || || || || || || || ||| | | |||| | Sbjct 28871784 CCCGCCACAGCTCGGGCCAGCAGCGTTTTGCCGGTGCCGGGTGGGCCCACCAAGAGGCAA 28871725 Query 9908 CCTCGTGGAATCTTGGCGCC 9927 ||| || ||||| || || Sbjct 28871724 CCTTTGGGGATCTTCGCCCC 28871705 >seq6 Length=34899179 Score = 159 bits (176), Expect = 4e-34 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||| || ||||||||| |||| || || || || ||||| ||||| ||||| || ||| Sbjct 4328575 TCCTTCGCCGAGCGACTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTTTTCTCCGGCTCC 4328634 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||||| || | |||||||||||||| || |||||||| |||||| |||||||||| Sbjct 4328635 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCACCTTCTCCAAC 4328694 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||| ||||| ||||||||||| || ||| || ||||| Sbjct 4328695 GAGCTCATCTCCCGTGACGAGGGCCTTCACTGCGACTTTGC 4328735 Score = 149 bits (164), Expect = 7e-31 Identities = 123/150 (82%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || || || ||||| ||| | || || || || || ||||| |||||||||| || ||| Sbjct 15336857 TCATTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGAGTCTTCTTCTCCGGCTCC 15336916 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||||| || | ||||||||||||||||| |||||||| |||||| |||||| ||| Sbjct 15336917 TTCTGCGCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCGGGTCTCACCTTCTCAAAC 15336976 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||| ||||| ||||||||||| |||||| Sbjct 15336977 GAGCTCATCTCCCGTGACGAGGGCCTCCAC 15337006 >seq1022 Length=749713 Score = 143 bits (158), Expect = 3e-29 Identities = 269/388 (69%), Gaps = 8/388 (2%) Strand=Plus/Plus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 ||||| || || || ||||| | || ||| || || || |||| || || || ||| Sbjct 665413 TCAAATCGCCCAGGTCGAAGCAAAGCAGAATCTAGAATGTCTGCGCGGTTGGTTGCTGCG 665472 Query 9587 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9646 || |||| |||||||| | ||||| ||||||||||| |||||||| || |||| | Sbjct 665473 ATCACAATTATACCTGTATTGCCTTCAAAGCCATCCATCTCGGTCAAAAGCTGATTAAGA 665532 Query 9647 GTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACGG 9704 || ||||||| ||||||||| || | | | | || | | | |||| |||| || | Sbjct 665533 GTCTGTTCCCTTTCATCATTTCCT--CCTCCGATTCCTGTTCCTCTTTGCCTTCCAACAG 665590 Query 9705 CATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTC-GCGAGCGACTTCAAAGAGA 9763 ||||||||||||||| || || ||||| || ||| || | | ||| ||| ||| Sbjct 665591 CATCAATCTCATCAACAAACACAATGCAAGGAGCATTCTCTTTGGCCTTCTTGAAA-AGA 665649 Query 9764 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9823 || || || || || || |||||||||||||| || ||||| | | ||||| || Sbjct 665650 TCACGAACTCGAGAAGCACCAACACCAACAAACATTTCTACAAATTCAGATCCGGAA-AT 665708 Query 9824 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9882 || || || |||||| | ||||| ||||| || || || | ||||| || || Sbjct 665709 TGAGAAAAATGGGACACCTGCCTCACCAGCAATTGCCTTAGCAAGCAAGGTCTTCCCAGT 665768 Query 9883 ACCTGGCTTACCCGCGAGGAGGGCACCT 9910 ||||| ||| | || ||| ||||| Sbjct 665769 TCCTGGAGGACCAACAAGAAGGACACCT 665796 >seq7 Length=28617404 Score = 136 bits (150), Expect = 5e-27 Identities = 307/452 (68%), Gaps = 12/452 (3%) Strand=Plus/Minus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 ||||| ||||| || ||||| | || ||| || || || | || || ||||| || Sbjct 3465426 TCAAATCGACCAGGCCGAAGTAAAGCAGAATCCAGAATGTCTGCACGGTTGGTCGCTGCA 3465367 Query 9587 ATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9644 ||||||| ||||| || ||| || |||| |||||||| || |||||||| || || | Sbjct 3465366 ATGACAATTATACCAGTATTTCCTT--CAAAGCCATCCATTTCAGTCAAAAGCTGATTGA 3465309 Query 9645 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCAC 9702 ||| ||||| | ||||||||| || | | | | || | | | |||| | || || Sbjct 3465308 GAGTCTGTTCTCTTTCATCATTTCCT--CCTCCAATTCCTGTTCCTCTTTGCCTACCAAC 3465251 Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGA-CTTCAAAGA 9761 ||||||||||||||||| || || || || || ||| || || ||| ||| | Sbjct 3465250 GGCATCAATCTCATCAACAAACACAATACAAGGAGCATTCTCTTTGGCCTTCTTGAAA-A 3465192 Query 9762 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9821 | || || || || || || |||||||||||||| || ||||| | | | ||| Sbjct 3465191 GGTCACGAACTCGTGAAGCACCGACACCAACAAACATTTCTACAAATTCAGATCCTGAA- 3465133 Query 9822 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9880 |||| || || |||||| | |||||| ||||| || ||| || |||||||| || Sbjct 3465132 ATTGAGAAAAATGGGACACCTGCTTCACCAGCAATTGCCTTGGCAAGCAGAGTCTTTCCA 3465073 Query 9881 GTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTAT 9940 || ||||| ||| || ||| ||||| ||||| ||| || | || | || Sbjct 3465072 GTTCCTGGAGGACCTATTAGAAGGACACCTTTAGGAATACGGGCTCCCACTGCAGTGAAT 3465013 Query 9941 CTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972 ||||| || | || || || || || | ||| Sbjct 3465012 CTCTCGGGCTTTTTCAGGAACTCAACTACTTC 3464981 >seq4 Length=30051516 Score = 105 bits (116), Expect = 8e-18 Identities = 256/384 (67%), Gaps = 14/384 (4%) Strand=Plus/Plus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTG 9671 || ||||||||||| ||||| || || || ||||| || |||| |||||||| | | | Sbjct 3938698 AACCCATCCATCTCCGTCAAGAGCTGATTGATAGTCTGCTCCCTCTCATCATTGCCACCG 3938757 Query 9672 GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 || | ||||| | | ||| ||||||| |||||||| ||||| ||||| || |||| Sbjct 3938758 CCAAGC--CCAGCTCCTCTCTGCCTTCCCACCGCATCAATTTCATCGATGAAAACAATGC 3938815 Query 9732 ATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 9791 | ||| || | || ||||| |||||||| || | | || ||||| || | Sbjct 3938816 ACGGTGCCTTAGCCTTTGCCTTCTCAAACAGATCCCGGACCCTCGACGCCCCCACTCCCA 3938875 Query 9792 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9851 |||| | |||||| || | | || | ||| || ||| ||||| | || || | Sbjct 3938876 CAAATAGCTCCACGAACTCGGACGCTGCACACGAGAAGAACGGGACTCCGGCCTCTCCTG 3938935 Query 9852 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 9911 | | || | || || || ||||| || ||||| ||| |||| | | ||| |||| Sbjct 3938936 CCACCGCCCTCGCCAGCAGCGTCTTGCCGGTACCCGGCGGACCCACCAAGAGACAACCTT 3938995 Query 9912 GTGGAATCTTGGCGCCACTTCCAAAG-----TATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 |||||||| |||| |||||| || | || || | ||| | || ||||| Sbjct 3938996 TAGGAATCTT--CGCC---CCCAAAGCCGTATACTTGTCCGGGTTCTTCAAGAAGTCCAC 3939050 Query 9967 AATTTCTTCCAATTCATCTTTGGC 9990 | ||| | ||| ||| |||||| Sbjct 3939051 CACTTCCTGCAACTCAAGTTTGGC 3939074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583207876373160