Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq9 212 7e-50 seq6 212 7e-50 >seq9 Length=34148863 Score = 212 bits (234), Expect = 7e-50 Identities = 488/724 (67%), Gaps = 16/724 (2%) Strand=Plus/Plus Query 59703 GTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTT 59762 ||||| ||||||||||| || ||||| || || || || || | | | | ||| Sbjct 33079133 GTCCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTCATCGAGAACCTCGCCGCGCGCTT- 33079191 Query 59763 TCCAAG---GATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAA 59818 || | || |||||| | |||||||||| | ||||||| | ||| ||| || Sbjct 33079192 --CATGCGCGACGTCCAGCTCCCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGC-CAT 33079248 Query 59819 CGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGA 59878 |||| ||||||||||||| |||||| ||| | |||| | | |||||||| || || Sbjct 33079249 CGAGAACATCCACTCCGAGATGTACTCCCTCCTCCTCGACACCTACGTCAAGGACCCCGA 33079308 Query 59879 AGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGA 59938 || ||| | | || |||| ||||| || || |||||| || | ||| || || Sbjct 33079309 CGACAAGTATCGCCTCTTCCACGCCATCGATACCGTCCCCGCCGTCGCCCGAAAGGCCGA 33079368 Query 59939 ATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTG 59997 |||||| | | ||||| || |||| || || || || | || ||| | || || | Sbjct 33079369 CTGGGCCCTTCGCTGGATCGATTCCTCCGGC-TCCTTCGCCGAGCGCCTCGTTGCCTTCG 33079427 Query 59998 CATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGC 60057 | ||||| || || ||||||||||| || || ||||| ||||| ||||||||||| || | Sbjct 33079428 CCTGCGTCGAGGGCATCTTCTTCTCCGGTTCCTTCTGCGCTATCTTCTGGCTCAAGAAAC 33079487 Query 60058 GTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCC 60117 | ||||||||||| ||||| | ||||||||||| || || ||||| ||||||||||||| Sbjct 33079488 GCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAACTCATCTCCCGCGACGAGGGCCTCC 33079547 Query 60118 ATCAGGAGTTTGCAGTGACGCTCTATTCACACCTATTGGAAAAATGCCCTTCCAAGGA-- 60175 | || || || || | | || | || | | | || | | | ||| |||| Sbjct 33079548 ACTGCGACTTCGC-CTGCCTC-CTCTACAGCCTCCTCCGCAACAAG-CTGTCCGAGGAAG 33079604 Query 60176 -TATTCACAAGATTGTTCAGTGGGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGC 60234 | | || ||| | ||| ||| | ||| | |||||| || || || | Sbjct 33079605 CGGTCCGGGCAATCGTTGCGGACGCTGTTGACATCGAGCGGGAGTTCGTCTGCGACGCAC 33079664 Query 60235 TTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCG 60294 | || | ||| | || ||| ||| || |||| |||||||| |||| || | Sbjct 33079665 TCCCTGTCGCTCTCGTCGGGATGAACGTTGATCTCATGAGCCAGTACATCGAGTTCGTGG 33079724 Query 60295 CGGACCGCCTCATGGCCCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCG 60354 | |||||||| | | | | || | || || ||| | | | ||||| |||| Sbjct 33079725 CCGACCGCCTGCTCGGGGCGCTGGGCCACGGCAAGATGTACCGGGCGGCCAACCCCTTCG 33079784 Query 60355 ACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGG 60414 ||||||||||| ||||||| || | || ||| |||||||||| |||||| |||| || | Sbjct 33079785 ACTGGATGGAGCTCATCTCGCTGCAGGGTAAGGCCAACTTCTTCGAGAAGAGGGTGGGCG 33079844 Query 60415 ATTA 60418 | || Sbjct 33079845 AGTA 33079848 Score = 208 bits (230), Expect = 8e-49 Identities = 261/353 (74%), Gaps = 4/353 (1%) Strand=Plus/Plus Query 59769 GATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTAT 59827 || |||||| | ||||||| || | ||||||| | ||| ||| || |||| || Sbjct 1096628 GACGTCCAGCTCCCCGAGGCTCGCGCCTTCTACGGCTTCCAGATCGC-CATCGAGAACAT 1096686 Query 59828 CCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGC 59887 |||||| |||| |||||| ||| | |||| | | ||||||| || || |||||| | Sbjct 1096687 CCACTCTGAGATGTACTCCCTCCTCCTCGACACCTACATCAAGGACCCTGACGAGAAGAC 1096746 Query 59888 TGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCAT 59947 |||| ||||| ||||| |||||| |||| | || | ||| || || |||||| | Sbjct 1096747 CCGTCTCTTCCGAGCCATCGAGACGGTCCCCTCTGTCGCCCGAAAGGCCGACTGGGCCCT 1096806 Query 59948 GCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGG 60006 || ||||| || || | || || ||||| | || | | || || || || || | Sbjct 1096807 GCGCTGGATTGAATCTTCCGGC-TCGTTTGCCGAGCGAATTGTCGCCTTCGCCTGTGTCG 1096865 Query 60007 AAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCA 60066 | |||||||||||||||||||| ||||| ||||| || |||||||| ||||| ||||||| Sbjct 1096866 AGGGAATCTTCTTCTCTGGCTCCTTCTGCGCTATCTTTTGGCTCAAGAAGCGCGGCCTCA 1096925 Query 60067 TGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCAT 60119 ||||||| || | ||||| |||||||| || ||||| ||||||||||| ||| Sbjct 1096926 TGCCGGGGCTCACCTTCTCGAACGAGCTTATCTCCCGTGACGAGGGCCTTCAT 1096978 >seq6 Length=34899179 Score = 212 bits (234), Expect = 7e-50 Identities = 448/656 (68%), Gaps = 12/656 (2%) Strand=Plus/Plus Query 59769 GATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAA-CGAGTCTAT 59827 || ||||| | |||||||||| | ||||||| | ||| | ||| |||| || Sbjct 4328374 GACGTCCAACTCCCCGAGGCCCGCGCCTTCTACGGTTTCCAGAT-TGCAATCGAGAACAT 4328432 Query 59828 CCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGC 59887 ||||||||||| |||||| || | |||||| || ||||||| || || | |||| Sbjct 4328433 CCACTCCGAGATGTACTCCCTTCTACTCGATACGTACATCAAGGACCCCGACGTGAAGTT 4328492 Query 59888 TGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCAT 59947 | | || |||| || || || || ||| || || | || || |||||||| | Sbjct 4328493 TCGCCTCTTCCACGCGATCGACACCGTCCCTGCCGTCGCCCGGAAGGCCGAATGGGCTCT 4328552 Query 59948 GCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGG 60006 || ||||| ||||| | || || || || | || ||| | || || || ||||| | Sbjct 4328553 CCAATGGATTGAGTCTTCCGGC-TCCTTCGCCGAGCGACTCGTCGCCTTCGCCTGCGTCG 4328611 Query 60007 AAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCA 60066 | || ||||| ||||| ||||| ||||| || || ||||||||||| ||||| ||||||| Sbjct 4328612 AGGGCATCTTTTTCTCCGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCA 4328671 Query 60067 TGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGT 60126 |||| || || | |||||||||||||| || ||||| ||||||||||| || || | Sbjct 4328672 TGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGCCTTCACTGCGACT 4328731 Query 60127 TTGCAGTGACGCTCTATTCACACCTATTGGAAAAATGCCCTTCCAAGGATA---TTCACA 60183 |||| || | | || | | | | | || | || | ||| |||| | | | Sbjct 4328732 TTGC-TTGCCTC-CTTTACGGCCTCCTCCGCAACAAGCTC-TCCGAGGACAAGGTCCGGG 4328788 Query 60184 AGATTGTT-CAGTGGGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGC 60242 || ||| | | | | | ||| | ||| | |||||| || || || || || | Sbjct 4328789 CTATCGTTGCCGACGCCGT-TGACATCGAGCGGGAGTTCGTCTGCGACGCCCTGCCCGTC 4328847 Query 60243 AAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGC 60302 ||| | || ||| | | || |||| |||||||| |||||||||| |||||| Sbjct 4328848 GCGCTCGTCGGGATGAATGGTGTCCTCATGAGCCAGTACATCGAGTTTGTCGCCGACCGC 4328907 Query 60303 CTCATGGCCCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATG 60362 || | | | | || | || ||| ||||| || |||||||||||||||||| Sbjct 4328908 CTGCTCGGGGCGCTGGGCTACGGCAAAATGTACGGGGTCTCCAACCCTTTCGACTGGATG 4328967 Query 60363 GAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 || ||||||| || | ||||||||||||||||| ||||| ||||||| || || Sbjct 4328968 GAACTCATCTCGCTGCAGGGGAAGACCAACTTCTTCGAGAAAAGGGTCGGTGAGTA 4329023 Score = 194 bits (214), Expect = 2e-44 Identities = 451/661 (68%), Gaps = 22/661 (3%) Strand=Plus/Plus Query 59769 GATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTAT 59827 || |||||| || | |||||||| | ||||||| | ||| ||| | | |||| || Sbjct 15336656 GACGTCCAGCTTCCTGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCT-ATCGAGAACAT 15336714 Query 59828 CCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGC 59887 |||||| |||| ||| || ||| | |||| | | ||||||| || | |||||| | Sbjct 15336715 CCACTCTGAGATGTATTCTCTCCTCCTCGACACCTACATCAAGGACCCCGGCGAGAAGTC 15336774 Query 59888 TGGTCTGTTCCGTGCCATAGAGAC-GTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCA 59946 | | || |||| |||||| || || ||||| | | || | || || || ||||| Sbjct 15336775 TCGCCTCTTCCATGCCATTGACACCGTCCCTC-CTGTCGCCCGCAAGGCCGAGTGGGCGC 15336833 Query 59947 TGCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTG 60005 | | ||||| || |||| | ||||| || | || ||| | || || || ||||| Sbjct 15336834 TACGCTGGATCGAATCCTCTGTC-TCATTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTC 15336892 Query 60006 GAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTC 60065 || ||| |||||||||| ||||| ||||| || || ||||||||||| ||||| |||||| Sbjct 15336893 GAGGGAGTCTTCTTCTCCGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGAGGCCTC 15336952 Query 60066 ATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAG 60125 |||||||| || | ||||| |||||||| || ||||| |||||||||||||| || Sbjct 15336953 ATGCCGGGTCTCACCTTCTCAAACGAGCTCATCTCCCGTGACGAGGGCCTCCACTGCGAC 15337012 Query 60126 TTTGCAGTGACGCTCTATTCACACCTATTGGAAAAATGCCCTTCCAAGGA---TATTCAC 60182 || || || | | || | || | | || | || | || | ||| || | | | | Sbjct 15337013 TTCGC-CTGCCTC-CTCTACAGTCTTCTTCGCAACAAGCTC-TCCGAGTACCGTGTCCGT 15337069 Query 60183 AAGATTGTT-CAGTGGGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATG 60241 | || ||| | | | | | ||| | ||| | || ||| || | || || || Sbjct 15337070 GAAATCGTTGCCGATGCCGT-TGACATCGAGCGGGAATTCGTCTGCAATGCCCTGCCGGT 15337128 Query 60242 CAAACTCATAGGTATGGACGCTGGAGA---AATGACGCAGTACATTCAGTTTGTCGCGGA 60298 | || | || ||| | ||| || |||| ||||| || |||| || || || Sbjct 15337129 CGCCCTTGTCGGGATGAA---TGGCGACCTCATGAGTCAGTATATCGAGTTCGTGGCCGA 15337185 Query 60299 CCGCCT-CATGGCCCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACT 60357 |||||| | ||| | | | || | | | | ||||| | | ||||| ||||||| Sbjct 15337186 CCGCCTGCTTGGAGC-GCTAGGTTACGAAAAGTTGTACGGGGCGGCCAACCCCTTCGACT 15337244 Query 60358 GGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATT 60417 |||||||| ||||||| || | |||||||| |||||||| |||||| ||||||| || | Sbjct 15337245 GGATGGAGCTCATCTCGCTGCAGGGGAAGACAAACTTCTTCGAGAAGAGGGTCGGCGACT 15337304 Query 60418 A 60418 | Sbjct 15337305 A 15337305 Score = 91.5 bits (100), Expect = 2e-13 Identities = 190/278 (68%), Gaps = 9/278 (3%) Strand=Plus/Plus Query 144724 TCGCCTTCATATCCGGCGTG---GCGATGAAAGTCCGAGTGAATGATGATGTCATTCAGA 144780 |||||||||| |||||||| || | || |||| ||| ||||| ||| | | || Sbjct 33887521 TCGCCTTCATCACCGGCGTGCCCGCCAGGA---TCCGTGTGCGGGATGAAGTCGTCCGGA 33887577 Query 144781 TGGGCGAGGTGAATTTTCTGTGCGTCCACCCAAAACTACGTCACAAAAAG-CTCGCACCG 144839 ||| ||||| || ||||| ||||||||| |||||||| | |||| | ||||| || Sbjct 33887578 TGGCTGAGGTCAACTTTCTCTGCGTCCACAAGAAACTACG-CTCAAAGCGGCTCGCCCCC 33887636 Query 144840 TTGATGATCCGTGAGATTACCCGACGGATCAATCTTCACGAGATCTGGCAGGCCGTATAT 144899 ||||||| ||| | ||| | ||| || || | | | ||||||||||| | ||| Sbjct 33887637 GTGATGATAAAGGAGGTCACCAGGCGGGTCCATTTGGAGAACATCTGGCAGGCAGCCTAT 33887696 Query 144900 ACGGGCGCCGTCTTGCGCCCGGACGTCATCGCGTCGGCTCGTTACTGGCACCGGCCTATA 144959 || | || ||| | | ||| |||| || | || |||||||| || | | Sbjct 33887697 ACAGCCGGGGTCGTCCTGCCGACTCCCATCACGACCTGCCGCTACTGGCATCGCTCGCTG 33887756 Query 144960 GACGTCAAGAAACTCGTCGATATCGGGTTCTTCCCGCC 144997 | ||||||||| ||||| | |||||| ||||||| Sbjct 33887757 AATCCAAAGAAACTCATCGATGTGGGGTTC-TCCCGCC 33887793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548475028230960