Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq9 212 7e-50
seq6 212 7e-50
>seq9
Length=34148863
Score = 212 bits (234), Expect = 7e-50
Identities = 488/724 (67%), Gaps = 16/724 (2%)
Strand=Plus/Plus
Query 59703 GTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTT 59762
||||| ||||||||||| || ||||| || || || || || | | | | |||
Sbjct 33079133 GTCCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTCATCGAGAACCTCGCCGCGCGCTT- 33079191
Query 59763 TCCAAG---GATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAA 59818
|| | || |||||| | |||||||||| | ||||||| | ||| ||| ||
Sbjct 33079192 --CATGCGCGACGTCCAGCTCCCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGC-CAT 33079248
Query 59819 CGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGA 59878
|||| ||||||||||||| |||||| ||| | |||| | | |||||||| || ||
Sbjct 33079249 CGAGAACATCCACTCCGAGATGTACTCCCTCCTCCTCGACACCTACGTCAAGGACCCCGA 33079308
Query 59879 AGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGA 59938
|| ||| | | || |||| ||||| || || |||||| || | ||| || ||
Sbjct 33079309 CGACAAGTATCGCCTCTTCCACGCCATCGATACCGTCCCCGCCGTCGCCCGAAAGGCCGA 33079368
Query 59939 ATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTG 59997
|||||| | | ||||| || |||| || || || || | || ||| | || || |
Sbjct 33079369 CTGGGCCCTTCGCTGGATCGATTCCTCCGGC-TCCTTCGCCGAGCGCCTCGTTGCCTTCG 33079427
Query 59998 CATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGC 60057
| ||||| || || ||||||||||| || || ||||| ||||| ||||||||||| || |
Sbjct 33079428 CCTGCGTCGAGGGCATCTTCTTCTCCGGTTCCTTCTGCGCTATCTTCTGGCTCAAGAAAC 33079487
Query 60058 GTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCC 60117
| ||||||||||| ||||| | ||||||||||| || || ||||| |||||||||||||
Sbjct 33079488 GCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAACTCATCTCCCGCGACGAGGGCCTCC 33079547
Query 60118 ATCAGGAGTTTGCAGTGACGCTCTATTCACACCTATTGGAAAAATGCCCTTCCAAGGA-- 60175
| || || || || | | || | || | | | || | | | ||| ||||
Sbjct 33079548 ACTGCGACTTCGC-CTGCCTC-CTCTACAGCCTCCTCCGCAACAAG-CTGTCCGAGGAAG 33079604
Query 60176 -TATTCACAAGATTGTTCAGTGGGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGC 60234
| | || ||| | ||| ||| | ||| | |||||| || || || |
Sbjct 33079605 CGGTCCGGGCAATCGTTGCGGACGCTGTTGACATCGAGCGGGAGTTCGTCTGCGACGCAC 33079664
Query 60235 TTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCG 60294
| || | ||| | || ||| ||| || |||| |||||||| |||| || |
Sbjct 33079665 TCCCTGTCGCTCTCGTCGGGATGAACGTTGATCTCATGAGCCAGTACATCGAGTTCGTGG 33079724
Query 60295 CGGACCGCCTCATGGCCCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCG 60354
| |||||||| | | | | || | || || ||| | | | ||||| ||||
Sbjct 33079725 CCGACCGCCTGCTCGGGGCGCTGGGCCACGGCAAGATGTACCGGGCGGCCAACCCCTTCG 33079784
Query 60355 ACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGG 60414
||||||||||| ||||||| || | || ||| |||||||||| |||||| |||| || |
Sbjct 33079785 ACTGGATGGAGCTCATCTCGCTGCAGGGTAAGGCCAACTTCTTCGAGAAGAGGGTGGGCG 33079844
Query 60415 ATTA 60418
| ||
Sbjct 33079845 AGTA 33079848
Score = 208 bits (230), Expect = 8e-49
Identities = 261/353 (74%), Gaps = 4/353 (1%)
Strand=Plus/Plus
Query 59769 GATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTAT 59827
|| |||||| | ||||||| || | ||||||| | ||| ||| || |||| ||
Sbjct 1096628 GACGTCCAGCTCCCCGAGGCTCGCGCCTTCTACGGCTTCCAGATCGC-CATCGAGAACAT 1096686
Query 59828 CCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGC 59887
|||||| |||| |||||| ||| | |||| | | ||||||| || || |||||| |
Sbjct 1096687 CCACTCTGAGATGTACTCCCTCCTCCTCGACACCTACATCAAGGACCCTGACGAGAAGAC 1096746
Query 59888 TGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCAT 59947
|||| ||||| ||||| |||||| |||| | || | ||| || || |||||| |
Sbjct 1096747 CCGTCTCTTCCGAGCCATCGAGACGGTCCCCTCTGTCGCCCGAAAGGCCGACTGGGCCCT 1096806
Query 59948 GCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGG 60006
|| ||||| || || | || || ||||| | || | | || || || || || |
Sbjct 1096807 GCGCTGGATTGAATCTTCCGGC-TCGTTTGCCGAGCGAATTGTCGCCTTCGCCTGTGTCG 1096865
Query 60007 AAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCA 60066
| |||||||||||||||||||| ||||| ||||| || |||||||| ||||| |||||||
Sbjct 1096866 AGGGAATCTTCTTCTCTGGCTCCTTCTGCGCTATCTTTTGGCTCAAGAAGCGCGGCCTCA 1096925
Query 60067 TGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCAT 60119
||||||| || | ||||| |||||||| || ||||| ||||||||||| |||
Sbjct 1096926 TGCCGGGGCTCACCTTCTCGAACGAGCTTATCTCCCGTGACGAGGGCCTTCAT 1096978
>seq6
Length=34899179
Score = 212 bits (234), Expect = 7e-50
Identities = 448/656 (68%), Gaps = 12/656 (2%)
Strand=Plus/Plus
Query 59769 GATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAA-CGAGTCTAT 59827
|| ||||| | |||||||||| | ||||||| | ||| | ||| |||| ||
Sbjct 4328374 GACGTCCAACTCCCCGAGGCCCGCGCCTTCTACGGTTTCCAGAT-TGCAATCGAGAACAT 4328432
Query 59828 CCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGC 59887
||||||||||| |||||| || | |||||| || ||||||| || || | ||||
Sbjct 4328433 CCACTCCGAGATGTACTCCCTTCTACTCGATACGTACATCAAGGACCCCGACGTGAAGTT 4328492
Query 59888 TGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCAT 59947
| | || |||| || || || || ||| || || | || || |||||||| |
Sbjct 4328493 TCGCCTCTTCCACGCGATCGACACCGTCCCTGCCGTCGCCCGGAAGGCCGAATGGGCTCT 4328552
Query 59948 GCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGG 60006
|| ||||| ||||| | || || || || | || ||| | || || || ||||| |
Sbjct 4328553 CCAATGGATTGAGTCTTCCGGC-TCCTTCGCCGAGCGACTCGTCGCCTTCGCCTGCGTCG 4328611
Query 60007 AAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCA 60066
| || ||||| ||||| ||||| ||||| || || ||||||||||| ||||| |||||||
Sbjct 4328612 AGGGCATCTTTTTCTCCGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCA 4328671
Query 60067 TGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGT 60126
|||| || || | |||||||||||||| || ||||| ||||||||||| || || |
Sbjct 4328672 TGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGCCTTCACTGCGACT 4328731
Query 60127 TTGCAGTGACGCTCTATTCACACCTATTGGAAAAATGCCCTTCCAAGGATA---TTCACA 60183
|||| || | | || | | | | | || | || | ||| |||| | | |
Sbjct 4328732 TTGC-TTGCCTC-CTTTACGGCCTCCTCCGCAACAAGCTC-TCCGAGGACAAGGTCCGGG 4328788
Query 60184 AGATTGTT-CAGTGGGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGC 60242
|| ||| | | | | | ||| | ||| | |||||| || || || || || |
Sbjct 4328789 CTATCGTTGCCGACGCCGT-TGACATCGAGCGGGAGTTCGTCTGCGACGCCCTGCCCGTC 4328847
Query 60243 AAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGC 60302
||| | || ||| | | || |||| |||||||| |||||||||| ||||||
Sbjct 4328848 GCGCTCGTCGGGATGAATGGTGTCCTCATGAGCCAGTACATCGAGTTTGTCGCCGACCGC 4328907
Query 60303 CTCATGGCCCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATG 60362
|| | | | | || | || ||| ||||| || ||||||||||||||||||
Sbjct 4328908 CTGCTCGGGGCGCTGGGCTACGGCAAAATGTACGGGGTCTCCAACCCTTTCGACTGGATG 4328967
Query 60363 GAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418
|| ||||||| || | ||||||||||||||||| ||||| ||||||| || ||
Sbjct 4328968 GAACTCATCTCGCTGCAGGGGAAGACCAACTTCTTCGAGAAAAGGGTCGGTGAGTA 4329023
Score = 194 bits (214), Expect = 2e-44
Identities = 451/661 (68%), Gaps = 22/661 (3%)
Strand=Plus/Plus
Query 59769 GATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTAT 59827
|| |||||| || | |||||||| | ||||||| | ||| ||| | | |||| ||
Sbjct 15336656 GACGTCCAGCTTCCTGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCT-ATCGAGAACAT 15336714
Query 59828 CCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGC 59887
|||||| |||| ||| || ||| | |||| | | ||||||| || | |||||| |
Sbjct 15336715 CCACTCTGAGATGTATTCTCTCCTCCTCGACACCTACATCAAGGACCCCGGCGAGAAGTC 15336774
Query 59888 TGGTCTGTTCCGTGCCATAGAGAC-GTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCA 59946
| | || |||| |||||| || || ||||| | | || | || || || |||||
Sbjct 15336775 TCGCCTCTTCCATGCCATTGACACCGTCCCTC-CTGTCGCCCGCAAGGCCGAGTGGGCGC 15336833
Query 59947 TGCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTG 60005
| | ||||| || |||| | ||||| || | || ||| | || || || |||||
Sbjct 15336834 TACGCTGGATCGAATCCTCTGTC-TCATTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTC 15336892
Query 60006 GAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTC 60065
|| ||| |||||||||| ||||| ||||| || || ||||||||||| ||||| ||||||
Sbjct 15336893 GAGGGAGTCTTCTTCTCCGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGAGGCCTC 15336952
Query 60066 ATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAG 60125
|||||||| || | ||||| |||||||| || ||||| |||||||||||||| ||
Sbjct 15336953 ATGCCGGGTCTCACCTTCTCAAACGAGCTCATCTCCCGTGACGAGGGCCTCCACTGCGAC 15337012
Query 60126 TTTGCAGTGACGCTCTATTCACACCTATTGGAAAAATGCCCTTCCAAGGA---TATTCAC 60182
|| || || | | || | || | | || | || | || | ||| || | | | |
Sbjct 15337013 TTCGC-CTGCCTC-CTCTACAGTCTTCTTCGCAACAAGCTC-TCCGAGTACCGTGTCCGT 15337069
Query 60183 AAGATTGTT-CAGTGGGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATG 60241
| || ||| | | | | | ||| | ||| | || ||| || | || || ||
Sbjct 15337070 GAAATCGTTGCCGATGCCGT-TGACATCGAGCGGGAATTCGTCTGCAATGCCCTGCCGGT 15337128
Query 60242 CAAACTCATAGGTATGGACGCTGGAGA---AATGACGCAGTACATTCAGTTTGTCGCGGA 60298
| || | || ||| | ||| || |||| ||||| || |||| || || ||
Sbjct 15337129 CGCCCTTGTCGGGATGAA---TGGCGACCTCATGAGTCAGTATATCGAGTTCGTGGCCGA 15337185
Query 60299 CCGCCT-CATGGCCCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACT 60357
|||||| | ||| | | | || | | | | ||||| | | ||||| |||||||
Sbjct 15337186 CCGCCTGCTTGGAGC-GCTAGGTTACGAAAAGTTGTACGGGGCGGCCAACCCCTTCGACT 15337244
Query 60358 GGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATT 60417
|||||||| ||||||| || | |||||||| |||||||| |||||| ||||||| || |
Sbjct 15337245 GGATGGAGCTCATCTCGCTGCAGGGGAAGACAAACTTCTTCGAGAAGAGGGTCGGCGACT 15337304
Query 60418 A 60418
|
Sbjct 15337305 A 15337305
Score = 91.5 bits (100), Expect = 2e-13
Identities = 190/278 (68%), Gaps = 9/278 (3%)
Strand=Plus/Plus
Query 144724 TCGCCTTCATATCCGGCGTG---GCGATGAAAGTCCGAGTGAATGATGATGTCATTCAGA 144780
|||||||||| |||||||| || | || |||| ||| ||||| ||| | | ||
Sbjct 33887521 TCGCCTTCATCACCGGCGTGCCCGCCAGGA---TCCGTGTGCGGGATGAAGTCGTCCGGA 33887577
Query 144781 TGGGCGAGGTGAATTTTCTGTGCGTCCACCCAAAACTACGTCACAAAAAG-CTCGCACCG 144839
||| ||||| || ||||| ||||||||| |||||||| | |||| | ||||| ||
Sbjct 33887578 TGGCTGAGGTCAACTTTCTCTGCGTCCACAAGAAACTACG-CTCAAAGCGGCTCGCCCCC 33887636
Query 144840 TTGATGATCCGTGAGATTACCCGACGGATCAATCTTCACGAGATCTGGCAGGCCGTATAT 144899
||||||| ||| | ||| | ||| || || | | | ||||||||||| | |||
Sbjct 33887637 GTGATGATAAAGGAGGTCACCAGGCGGGTCCATTTGGAGAACATCTGGCAGGCAGCCTAT 33887696
Query 144900 ACGGGCGCCGTCTTGCGCCCGGACGTCATCGCGTCGGCTCGTTACTGGCACCGGCCTATA 144959
|| | || ||| | | ||| |||| || | || |||||||| || | |
Sbjct 33887697 ACAGCCGGGGTCGTCCTGCCGACTCCCATCACGACCTGCCGCTACTGGCATCGCTCGCTG 33887756
Query 144960 GACGTCAAGAAACTCGTCGATATCGGGTTCTTCCCGCC 144997
| ||||||||| ||||| | |||||| |||||||
Sbjct 33887757 AATCCAAAGAAACTCATCGATGTGGGGTTC-TCCCGCC 33887793
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548475028230960
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