Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq9 188 8e-43 seq10 98.7 1e-15 seq2611 93.3 5e-14 seq6 93.3 5e-14 seq5 93.3 5e-14 seq11 89.7 6e-13 seq7 89.7 6e-13 seq3 89.7 6e-13 >seq9 Length=34148863 Score = 188 bits (208), Expect = 8e-43 Identities = 371/539 (69%), Gaps = 15/539 (3%) Strand=Plus/Minus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 || ||||| || | || || ||||| || || |||||||| | ||||||||| || ||| Sbjct 1096950 TCGTTCGAGAAGGTGAGCCCCGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATAGCGCAG 1096891 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAAC 74909 ||||| ||| ||||||||| || |||||||| || |||||||||| || | || ||| Sbjct 1096890 AAGGAGCCAGAGAAGAAGATTCCCTCGACACAGGCGAAGGCGACAATTCGCTCGGCAAAC 1096831 Query 74910 GGTGCATCGGAAG--TCA-TCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGG 74966 | || |||||| ||| |||| | | ||||| || || ||||| ||| | ||| Sbjct 1096830 GA-GC--CGGAAGATTCAATCCAGCGCAGGGCCCAGTCGGCCTTTCGGGCGACAGAGGGG 1096774 Query 74967 ACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCA 75026 || || ||||| ||| ||||||| | | |||||| || || ||||||| | |||| Sbjct 1096773 ACCGTCTCGATGGCTCGGAAGAGACGGGTCTTCTCGTCAGGGTCCTTGATGTAGGTGTCG 1096714 Query 75027 ATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAA 75085 | | || |||||| |||| || || || |||| || ||| |||| | ||||||| Sbjct 1096713 AGGAGGAGGGAGTACATCTCAGAGTGGATGTTCTCGATGG-CGATCTGGAAGCCGTAGAA 1096655 Query 75086 AGACCGCGCCTCTGCAATCTGTACATCCTT--TGAAAAATTCATGTCGATATTCTCCATG 75143 | || ||||| | | ||| || || |||| | | ||| ||||| | | Sbjct 1096654 GGCGCGAGCCTCGGGGAGCTGGACGTCGCGCATGAACCGGGC--GGCGAGGTTCTCAAGG 1096597 Query 75144 ACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCG 75203 ||||||||||| ||||||||||| || || || || ||| ||||||||||| ||| Sbjct 1096596 ACGATGCCGTCTGAGGCGGCGAAGAAGGCAAGAACGTGGGAGATGAAGTGGCGCTCGTCG 1096537 Query 75204 TCAGTGA---GTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTC 75260 | | || | | | ||||| | |||| | || ||| | |||||| ||||| Sbjct 1096536 TGGGAGAGGCGATGCTGCCAATGGGGTACGTCCGGAGACAGATCCACCTCCTCCGCCGTC 1096477 Query 75261 CAGAAACTCCCAATCGCCTTTTTGTACAAAGACCACAAGTCAGGGTAATTGATTGGAAA 75319 ||||| | | |||||| ||||| || ||| | | ||||||| |||| || || Sbjct 1096476 CAGAAGGAGGCCACCGCCTTCTTGTAGAACTCCCAGATGGAAGGGTAAGTGATGGGGAA 1096418 Score = 178 bits (196), Expect = 1e-39 Identities = 349/508 (69%), Gaps = 11/508 (2%) Strand=Plus/Minus Query 74789 TTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACA 74848 ||| || || || | ||||| ||||| || || || ||||| | ||| ||||| || || Sbjct 33079522 TTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATAGCGCA 33079463 Query 74849 GAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 ||||||||| |||||||||||| ||||| || || ||||| || ||||| | ||||| Sbjct 33079462 GAAGGAACCGGAGAAGAAGATGCCCTCGACGCAGGCGAAGGCAACGAGGCGCTCGGCGAA 33079403 Query 74909 CGGTGCATCGGA--AGTC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGG 74965 || || |||| | || ||||| | ||||| || || ||||| ||| || || Sbjct 33079402 -GGAGC--CGGAGGAATCGATCCAGCGAAGGGCCCAGTCGGCCTTTCGGGCGACGGCGGG 33079346 Query 74966 GACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTC 75025 ||| |||||||| || |||||||||| ||| || ||||| ||||||||| |||| Sbjct 33079345 GACGGTATCGATGGCGTGGAAGAGGCGATACTTGTCGTCGGGGTCCTTGACGTAGGTGTC 33079286 Query 75026 AATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGA 75084 | | || |||||| |||| || || || |||| || ||| |||| | |||||| Sbjct 33079285 GAGGAGGAGGGAGTACATCTCGGAGTGGATGTTCTCGATG-GCGATCTGGAAGCCGTAGA 33079227 Query 75085 AAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGA 75144 | | || ||||| | | ||| || || || | | ||| ||||| |||| Sbjct 33079226 AGGCGCGGGCCTCGGGGAGCTGGACGTCGCGCATGAAGCGCGCGGCGAGGTTCTCGATGA 33079167 Query 75145 CGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGT 75204 ||||||| || ||||||||||| || || || || || |||| ||||||| ||| Sbjct 33079166 CGATGCCATCGGAGGCGGCGAAGAAGGCGAGGACGTGGGAGACAAAGCGGCGCTCGTCGG 33079107 Query 75205 CAGTGA---GTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCC 75261 |||| | | | ||| | |||||| || || || | |||||| |||||| Sbjct 33079106 GGGTGAGACGGTGTTGCCAGTGGGAGAGGTCCGGCGACAGGTCCACCTCCTCCGCCGTCC 33079047 Query 75262 AGAAACTCCCAATCGCCTTTTTGTACAA 75289 |||| | | |||||| ||||| || Sbjct 33079046 AGAACGAGGCCACCGCCTTCTTGTAGAA 33079019 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| || || |||| ||||||||||||||||||||||||||| ||||| Sbjct 9308149 TGCTTTCATTGAGATTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 9308208 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 9308209 TGAGCTATGAAAGC 9308222 >seq10 Length=33665772 Score = 98.7 bits (108), Expect = 1e-15 Identities = 67/74 (91%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| ||||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 24362027 TGCTTTCGTTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 24362086 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 24362087 TGAGCTACGAAAGC 24362100 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| ||||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 24362180 TGCTTTCATTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 24362239 Query 79684 TGAGCTACGAAAGCAAA 79700 ||||||| |||||| || Sbjct 24362240 TGAGCTATGAAAGCCAA 24362256 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| ||||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 20257111 TGCTTTCATTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 20257170 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 20257171 TGAGCTATGAAAGC 20257184 >seq2611 Length=2091 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| ||||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 1393 TGCTTTCATTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1334 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 1333 TGAGCTATGAAAGCAA 1318 >seq6 Length=34899179 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 ||||||||| |||| ||||| |||| ||||||||||||||||||||||||||| |||| Sbjct 11813150 ACTGCTTTCATTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 11813091 Query 79682 ATTGAGCTACGAAAGC 79697 | ||||||| |||||| Sbjct 11813090 ACTGAGCTATGAAAGC 11813075 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 79621 AGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-AC 79679 || |||||||| |||| || || |||| ||||||||||||||||||||||||||| || Sbjct 29394938 AGCCTGCTTTCATTGAGATTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAAC 29394997 Query 79680 CAATTGAGCTACGAAAGC 79697 ||| ||||||| |||||| Sbjct 29394998 CAACTGAGCTATGAAAGC 29395015 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 ||||||||| |||| ||||| |||| ||||||||||||||||||| ||||||| |||| Sbjct 11813321 ACTGCTTTCATTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGCGTGCTCTAACCA 11813262 Query 79682 ATTGAGCTACGAAAGC 79697 | ||||||| | |||| Sbjct 11813261 ACTGAGCTATGCAAGC 11813246 >seq5 Length=29377369 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| ||||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 26821370 TGCTTTCATTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 26821429 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 26821430 TGAGCTATGAAAGCAA 26821445 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| ||||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 770731 TGCTTTCATTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 770672 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 770671 TGAGCTATGAAAGC 770658 >seq11 Length=25514024 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| ||||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 16434819 TGCTTTCATTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 16434878 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 16434879 TGAGCTATGAAAGC 16434892 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| || || |||| ||||||||||||||||||||||||||| ||||| Sbjct 6927535 TGCTTTCATTGAGATTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 6927594 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 6927595 TGAGCTATGAAAGC 6927608 >seq7 Length=28617404 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 28552421 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 28552362 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 28552361 TGAGCTACGAAAGC 28552348 >seq3 Length=30470407 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| ||||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 3929557 TGCTTTCATTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 3929616 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 3929617 TGAGCTATGAAAGC 3929630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547166346988200