Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq9 188 8e-43
seq10 98.7 1e-15
seq2611 93.3 5e-14
seq6 93.3 5e-14
seq5 93.3 5e-14
seq11 89.7 6e-13
seq7 89.7 6e-13
seq3 89.7 6e-13
>seq9
Length=34148863
Score = 188 bits (208), Expect = 8e-43
Identities = 371/539 (69%), Gaps = 15/539 (3%)
Strand=Plus/Minus
Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849
|| ||||| || | || || ||||| || || |||||||| | ||||||||| || |||
Sbjct 1096950 TCGTTCGAGAAGGTGAGCCCCGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATAGCGCAG 1096891
Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAAC 74909
||||| ||| ||||||||| || |||||||| || |||||||||| || | || |||
Sbjct 1096890 AAGGAGCCAGAGAAGAAGATTCCCTCGACACAGGCGAAGGCGACAATTCGCTCGGCAAAC 1096831
Query 74910 GGTGCATCGGAAG--TCA-TCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGG 74966
| || |||||| ||| |||| | | ||||| || || ||||| ||| | |||
Sbjct 1096830 GA-GC--CGGAAGATTCAATCCAGCGCAGGGCCCAGTCGGCCTTTCGGGCGACAGAGGGG 1096774
Query 74967 ACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCA 75026
|| || ||||| ||| ||||||| | | |||||| || || ||||||| | ||||
Sbjct 1096773 ACCGTCTCGATGGCTCGGAAGAGACGGGTCTTCTCGTCAGGGTCCTTGATGTAGGTGTCG 1096714
Query 75027 ATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAA 75085
| | || |||||| |||| || || || |||| || ||| |||| | |||||||
Sbjct 1096713 AGGAGGAGGGAGTACATCTCAGAGTGGATGTTCTCGATGG-CGATCTGGAAGCCGTAGAA 1096655
Query 75086 AGACCGCGCCTCTGCAATCTGTACATCCTT--TGAAAAATTCATGTCGATATTCTCCATG 75143
| || ||||| | | ||| || || |||| | | ||| ||||| | |
Sbjct 1096654 GGCGCGAGCCTCGGGGAGCTGGACGTCGCGCATGAACCGGGC--GGCGAGGTTCTCAAGG 1096597
Query 75144 ACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCG 75203
||||||||||| ||||||||||| || || || || ||| ||||||||||| |||
Sbjct 1096596 ACGATGCCGTCTGAGGCGGCGAAGAAGGCAAGAACGTGGGAGATGAAGTGGCGCTCGTCG 1096537
Query 75204 TCAGTGA---GTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTC 75260
| | || | | | ||||| | |||| | || ||| | |||||| |||||
Sbjct 1096536 TGGGAGAGGCGATGCTGCCAATGGGGTACGTCCGGAGACAGATCCACCTCCTCCGCCGTC 1096477
Query 75261 CAGAAACTCCCAATCGCCTTTTTGTACAAAGACCACAAGTCAGGGTAATTGATTGGAAA 75319
||||| | | |||||| ||||| || ||| | | ||||||| |||| || ||
Sbjct 1096476 CAGAAGGAGGCCACCGCCTTCTTGTAGAACTCCCAGATGGAAGGGTAAGTGATGGGGAA 1096418
Score = 178 bits (196), Expect = 1e-39
Identities = 349/508 (69%), Gaps = 11/508 (2%)
Strand=Plus/Minus
Query 74789 TTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACA 74848
||| || || || | ||||| ||||| || || || ||||| | ||| ||||| || ||
Sbjct 33079522 TTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATAGCGCA 33079463
Query 74849 GAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908
||||||||| |||||||||||| ||||| || || ||||| || ||||| | |||||
Sbjct 33079462 GAAGGAACCGGAGAAGAAGATGCCCTCGACGCAGGCGAAGGCAACGAGGCGCTCGGCGAA 33079403
Query 74909 CGGTGCATCGGA--AGTC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGG 74965
|| || |||| | || ||||| | ||||| || || ||||| ||| || ||
Sbjct 33079402 -GGAGC--CGGAGGAATCGATCCAGCGAAGGGCCCAGTCGGCCTTTCGGGCGACGGCGGG 33079346
Query 74966 GACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTC 75025
||| |||||||| || |||||||||| ||| || ||||| ||||||||| ||||
Sbjct 33079345 GACGGTATCGATGGCGTGGAAGAGGCGATACTTGTCGTCGGGGTCCTTGACGTAGGTGTC 33079286
Query 75026 AATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGA 75084
| | || |||||| |||| || || || |||| || ||| |||| | ||||||
Sbjct 33079285 GAGGAGGAGGGAGTACATCTCGGAGTGGATGTTCTCGATG-GCGATCTGGAAGCCGTAGA 33079227
Query 75085 AAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGA 75144
| | || ||||| | | ||| || || || | | ||| ||||| ||||
Sbjct 33079226 AGGCGCGGGCCTCGGGGAGCTGGACGTCGCGCATGAAGCGCGCGGCGAGGTTCTCGATGA 33079167
Query 75145 CGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGT 75204
||||||| || ||||||||||| || || || || || |||| ||||||| |||
Sbjct 33079166 CGATGCCATCGGAGGCGGCGAAGAAGGCGAGGACGTGGGAGACAAAGCGGCGCTCGTCGG 33079107
Query 75205 CAGTGA---GTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCC 75261
|||| | | | ||| | |||||| || || || | |||||| ||||||
Sbjct 33079106 GGGTGAGACGGTGTTGCCAGTGGGAGAGGTCCGGCGACAGGTCCACCTCCTCCGCCGTCC 33079047
Query 75262 AGAAACTCCCAATCGCCTTTTTGTACAA 75289
|||| | | |||||| ||||| ||
Sbjct 33079046 AGAACGAGGCCACCGCCTTCTTGTAGAA 33079019
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| || || |||| ||||||||||||||||||||||||||| |||||
Sbjct 9308149 TGCTTTCATTGAGATTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 9308208
Query 79684 TGAGCTACGAAAGC 79697
||||||| ||||||
Sbjct 9308209 TGAGCTATGAAAGC 9308222
>seq10
Length=33665772
Score = 98.7 bits (108), Expect = 1e-15
Identities = 67/74 (91%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| ||||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 24362027 TGCTTTCGTTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 24362086
Query 79684 TGAGCTACGAAAGC 79697
||||||||||||||
Sbjct 24362087 TGAGCTACGAAAGC 24362100
Score = 91.5 bits (100), Expect = 2e-13
Identities = 67/77 (87%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| ||||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 24362180 TGCTTTCATTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 24362239
Query 79684 TGAGCTACGAAAGCAAA 79700
||||||| |||||| ||
Sbjct 24362240 TGAGCTATGAAAGCCAA 24362256
Score = 89.7 bits (98), Expect = 6e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| ||||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 20257111 TGCTTTCATTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 20257170
Query 79684 TGAGCTACGAAAGC 79697
||||||| ||||||
Sbjct 20257171 TGAGCTATGAAAGC 20257184
>seq2611
Length=2091
Score = 93.3 bits (102), Expect = 5e-14
Identities = 67/76 (88%), Gaps = 1/76 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| ||||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 1393 TGCTTTCATTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1334
Query 79684 TGAGCTACGAAAGCAA 79699
||||||| ||||||||
Sbjct 1333 TGAGCTATGAAAGCAA 1318
>seq6
Length=34899179
Score = 93.3 bits (102), Expect = 5e-14
Identities = 67/76 (88%), Gaps = 1/76 (1%)
Strand=Plus/Minus
Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681
||||||||| |||| ||||| |||| ||||||||||||||||||||||||||| ||||
Sbjct 11813150 ACTGCTTTCATTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 11813091
Query 79682 ATTGAGCTACGAAAGC 79697
| ||||||| ||||||
Sbjct 11813090 ACTGAGCTATGAAAGC 11813075
Score = 87.8 bits (96), Expect = 2e-12
Identities = 67/78 (86%), Gaps = 1/78 (1%)
Strand=Plus/Plus
Query 79621 AGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-AC 79679
|| |||||||| |||| || || |||| ||||||||||||||||||||||||||| ||
Sbjct 29394938 AGCCTGCTTTCATTGAGATTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAAC 29394997
Query 79680 CAATTGAGCTACGAAAGC 79697
||| ||||||| ||||||
Sbjct 29394998 CAACTGAGCTATGAAAGC 29395015
Score = 84.2 bits (92), Expect = 2e-11
Identities = 65/76 (86%), Gaps = 1/76 (1%)
Strand=Plus/Minus
Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681
||||||||| |||| ||||| |||| ||||||||||||||||||| ||||||| ||||
Sbjct 11813321 ACTGCTTTCATTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGCGTGCTCTAACCA 11813262
Query 79682 ATTGAGCTACGAAAGC 79697
| ||||||| | ||||
Sbjct 11813261 ACTGAGCTATGCAAGC 11813246
>seq5
Length=29377369
Score = 93.3 bits (102), Expect = 5e-14
Identities = 67/76 (88%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| ||||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 26821370 TGCTTTCATTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 26821429
Query 79684 TGAGCTACGAAAGCAA 79699
||||||| ||||||||
Sbjct 26821430 TGAGCTATGAAAGCAA 26821445
Score = 89.7 bits (98), Expect = 6e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| ||||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 770731 TGCTTTCATTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 770672
Query 79684 TGAGCTACGAAAGC 79697
||||||| ||||||
Sbjct 770671 TGAGCTATGAAAGC 770658
>seq11
Length=25514024
Score = 89.7 bits (98), Expect = 6e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| ||||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 16434819 TGCTTTCATTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 16434878
Query 79684 TGAGCTACGAAAGC 79697
||||||| ||||||
Sbjct 16434879 TGAGCTATGAAAGC 16434892
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| || || |||| ||||||||||||||||||||||||||| |||||
Sbjct 6927535 TGCTTTCATTGAGATTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 6927594
Query 79684 TGAGCTACGAAAGC 79697
||||||| ||||||
Sbjct 6927595 TGAGCTATGAAAGC 6927608
>seq7
Length=28617404
Score = 89.7 bits (98), Expect = 6e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 28552421 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 28552362
Query 79684 TGAGCTACGAAAGC 79697
||||||||||||||
Sbjct 28552361 TGAGCTACGAAAGC 28552348
>seq3
Length=30470407
Score = 89.7 bits (98), Expect = 6e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| ||||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 3929557 TGCTTTCATTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 3929616
Query 79684 TGAGCTACGAAAGC 79697
||||||| ||||||
Sbjct 3929617 TGAGCTATGAAAGC 3929630
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547166346988200
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