Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq8 122 5e-23
seq6 116 2e-21
seq9 111 1e-19
seq1 111 1e-19
seq11 102 5e-17
seq5 100 2e-16
seq2973 86.0 4e-12
>seq8
Length=35439739
Score = 122 bits (134), Expect = 5e-23
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || || || | || ||||| |||||| ||| |||||| || ||||| ||||| | |
Sbjct 4858223 CCTCCCCTGAGCCTCAGCACCAGATGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCA 4858164
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || ||||||| || ||||| || ||||| || | | || |||||||||||
Sbjct 4858163 AGAGTGCGGCCGTCTTCGAGCTGTTTGCCTGCAAAGATGAGCCTTTGCTGGTCCGGCGGG 4858104
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| ||||||||||| |||| || | || ||| | |||||||| |||||| ||
Sbjct 4858103 ATGCCCTCCTTGTCCTGGATC-TTGGCCTTGACGTTGTCGATTGTGTCCGAGCTCTCGAC 4858045
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|||| ||| || || || || || | || ||||| || |||||||||
Sbjct 4858044 CTCCAAGGTAATGGTCTTCCCAGTGAGAGTCTTCACGAAGATCTGCATG 4857996
Score = 107 bits (118), Expect = 1e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || || || | || ||||| ||| || ||| |||||| ||||||||||| || |
Sbjct 1222288 CCTCCCCTGAGTCTCAGCACCAGATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGCC 1222347
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| || || | || || || || || |||||||| || | | ||| |||||||| ||
Sbjct 1222348 AAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGG 1222407
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| ||||||||||| |||| || | |||||| | || ||||| |||||| ||
Sbjct 1222408 ATGCCCTCCTTGTCCTGGATC-TTGGCCTTAACGTTGTCGATCGTGTCCGAGCTCTCGAC 1222466
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| | ||| || || || ||||| | || |||||||| ||||||||
Sbjct 1222467 CTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 1222514
Score = 100 bits (110), Expect = 2e-16
Identities = 155/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| || | ||||| || |||||| |||||| ||||| || ||||| | || || ||
Sbjct 1222069 AGGCGGAGCACCAGGTGAAGAGTGGACTCCTTCTGAATATTGTAATCGGCCAGGGTGCGA 1222128
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || || || || || ||||| || | | ||| |||||||| || | ||||||
Sbjct 1222129 CCGTCCTCGAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGTGGAATACCCTCC 1222188
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| |||| |||||| | || ||||| |||||| || |||| |||
Sbjct 1222189 TTGTCCTGGATC-TTTGCCTTAACGTTGTCGATCGTGTCAGAGCTCTCAACCTCCAGGGT 1222247
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || || | || || || || ||||||||
Sbjct 1222248 GATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 1222286
Score = 96.9 bits (106), Expect = 2e-15
Identities = 150/209 (72%), Gaps = 4/209 (2%)
Strand=Plus/Plus
Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563
||||| ||| |||||| |||||||| || || | || ||||| | || || || ||
Sbjct 26900833 TGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCCAGCTGC 26900892
Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623
|| ||||| || || | |||||| || |||||||| | ||||||||||| ||| ||
Sbjct 26900893 TTTCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTC-CTGAATCTT 26900951
Query 34624 TGTTTTAACGAT-AAAATTGTGT-CTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681
| || ||| | ||| |||| | || | ||||| || | ||| ||||| || || |
Sbjct 26900952 GGCCTTCACGTTGTCAATCGTGTCCGACGAT-TCCACCTCGAGGGTGATCGTCTTCCCCG 26901010
Query 34682 TTAACGTTTTCACAAAAATCTGCATGTTG 34710
| | ||| ||||| || |||||||| |||
Sbjct 26901011 TCAGCGTCTTCACGAAGATCTGCATCTTG 26901039
Score = 95.1 bits (104), Expect = 8e-15
Identities = 145/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563
||||| ||| |||||| |||||||| || || | || || || |||| || || ||
Sbjct 4857971 TGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGC 4857912
Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623
|| || ||||| || | | || |||||||| || | ||||||||||| |||| ||
Sbjct 4857911 TTGCCTGCAAAGATGAGCCTTTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATC-TT 4857853
Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682
| ||||| | || ||||| ||| || || |||| |||||| || || |||||
Sbjct 4857852 GGCCTTAACATTGTCGATGGTGTCAGAGCTTTCGACCTCCAAGGTTATGGTCTTCCCGGT 4857793
Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706
| || |||||||| ||||||||
Sbjct 4857792 GAGGGTCTTCACAAAGATCTGCAT 4857769
Score = 84.2 bits (92), Expect = 1e-11
Identities = 160/233 (69%), Gaps = 2/233 (1%)
Strand=Plus/Minus
Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537
||||||| | || || | || | ||||| ||| |||||| || ||||| || || |
Sbjct 32122460 CGCCGCCGCGGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 32122401
Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597
|| || || |||| || || || || ||||| || || | | ||| ||||||||||
Sbjct 32122400 CGAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCCGGCG 32122341
Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCC 34656
| | || |||||||| |||| || | || ||| || || ||||| | ||||
Sbjct 32122340 GGATCCCTTCCTTGTCCTGGATC-TTGGCCTTGACGTTATCGATCGTGTCCGAGGACTCC 32122282
Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709
|| || | ||| || || || || || | || ||||| || |||||||| ||
Sbjct 32122281 ACCTCGAGGGTGATTGTCTTCCCCGTAAGGGTCTTCACGAAGATCTGCATCTT 32122229
Score = 82.4 bits (90), Expect = 5e-11
Identities = 142/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563
||||| ||| |||||| ||||||||||| || | | || || ||||||| || ||
Sbjct 1223255 TGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGCCAAGGTGCGGCCGTCTTCGAGCTGC 1223314
Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623
||||| || || || | | ||| ||||| || || | |||||||||||| |||| ||
Sbjct 1223315 TTACCAGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTGGATC-TT 1223373
Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682
| ||||| | || ||||| | || || || | ||| || || || || ||
Sbjct 1223374 GGCCTTAACATTGTCGATGGTGTCGGAGGATTCAACCTCTAGGGTGATGGTCTTGCCAGT 1223433
Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706
| |||||||| || ||||||||
Sbjct 1223434 GAGGGTTTTCACGAAGATCTGCAT 1223457
>seq6
Length=34899179
Score = 116 bits (128), Expect = 2e-21
Identities = 161/220 (73%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||| || |||||| ||||| || |||||||| |||| ||||| |||
Sbjct 13154761 AGACGAAGGACCAGGTGAAGAGTGGATTCCTTCTGGATGTTATAGTCTGCCAGTGTGCGC 13154702
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || ||||| ||||| |||| | ||||||||| || || | |||||||
Sbjct 13154701 CCATCCTCGAGCTGCTTACCCGCAAAGATTAGCCTCTGTTGGTCTGGTGGGATTCCCTCC 13154642
Query 34609 TTGT-CTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGG 34666
|||| |||| ||| |||| || || | || ||||| |||||| || |||| |
Sbjct 13154641 TTGTCCTGT-ATC-TTTGCCTTCACATTGTCGATAGTGTCCGAGCTCTCAACCTCCAGAG 13154584
Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| || || || || || | |||||||||||||| |||||
Sbjct 13154583 TGATGGTCTTCCCCGTGAGGGTTTTCACAAAAATTTGCAT 13154544
>seq9
Length=34148863
Score = 111 bits (122), Expect = 1e-19
Identities = 158/220 (72%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| || | ||||| || || ||| ||||| |||||||| ||||||| || || |||
Sbjct 33548978 AGGCGGAGCACCAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGC 33549037
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || || || || || ||||| || | | ||| || ||||| || | ||||||
Sbjct 33549038 CCGTCCTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCCGGTGGAATCCCCTCC 33549097
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| |||| || || || ||| ||||| |||||||| |||| |||
Sbjct 33549098 TTGTCCTGGATC-TTTGCCTTGACATTATCAATCGTGTCCGAACTCTCCACCTCCAAGGT 33549156
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || || || || | ||| || ||||| |||||||||
Sbjct 33549157 AATGGTCTTCCCTGTGAGCGTCTTAACAAAGATCTGCATG 33549196
Score = 96.9 bits (106), Expect = 2e-15
Identities = 155/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| || | ||||| || || ||| ||||| |||||||| ||||||| || || ||
Sbjct 33541426 AGGCGGAGCACCAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGG 33541367
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || || || || || || || || | | ||| || ||||| || | ||||||
Sbjct 33541366 CCGTCCTCTAGCTGCTTCCCAGCGAAGATGAGCCTCTGCTGATCCGGTGGAATCCCCTCC 33541307
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | || ||| | || ||||| ||||||||| |||| |||
Sbjct 33541306 TTGTCCTGGATC-TTCGCCTTGACGTTGTCGATCGTGTCCGAGCTCTCCACCTCCAAGGT 33541248
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || || ||||| | || || ||||| |||||||||
Sbjct 33541247 AATGGTCTTCCCGGTGAGGGTCTTAACAAAGATCTGCATG 33541208
>seq1
Length=27573629
Score = 111 bits (122), Expect = 1e-19
Identities = 166/233 (71%), Gaps = 2/233 (1%)
Strand=Plus/Plus
Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537
|||| || | ||| || | || | ||||| ||| |||||| || ||||| || ||||
Sbjct 19376094 CGCCCCCACGAAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTG 19376153
Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597
|| || ||| |||| || || || || ||||||||||| | ||||| ||||||||||
Sbjct 19376154 CGAGGGTGCGCCCGTCCTCGAGCTGCTTCCCGGCAAATATGAGGCGCTGCTGGTCCGGCG 19376213
Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656
| | ||||||||||| |||| || | || ||| | || ||||| ||||
Sbjct 19376214 GGATCCCCTCCTTGTCCTGGATC-TTCGCCTTGACGTTGTCGATGGTGTCCGAAGACTCC 19376272
Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709
|| || | ||| ||||| || ||||| | || ||||| || |||||||| ||
Sbjct 19376273 ACCTCGAGGGTGATCGTCTTCCCGGTGAGGGTCTTCACGAAGATCTGCATCTT 19376325
>seq11
Length=25514024
Score = 102 bits (112), Expect = 5e-17
Identities = 162/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537
||||||| | || || | ||||| ||||| || |||||| || |||||||| || |
Sbjct 15140709 CGCCGCCGCGGAGGCGGAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTATAGTCGG 15140768
Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597
|| || || |||| || || || || ||||| || || | ||||| ||||||||||
Sbjct 15140769 CGAGGGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGGCGCTGCTGGTCCGGCG 15140828
Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656
| | ||||||||||| |||| || | || ||| | || ||||| ||||
Sbjct 15140829 GGATGCCCTCCTTGTCCTGGATC-TTCGCCTTCACGTTGTCGATCGTGTCCGACGACTCC 15140887
Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || | ||| ||||| || || || || || ||||| || ||||||||
Sbjct 15140888 ACCTCAAGGGTGATCGTCTTCCCCGTCAAAGTCTTCACGAAGATCTGCAT 15140937
>seq5
Length=29377369
Score = 100 bits (110), Expect = 2e-16
Identities = 151/211 (72%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557
|||| || |||||| ||||| |||||| | || || || || || | || ||
Sbjct 457964 ACCAGGTGAAGAGTGGATTCCTTCTGAATGCTGTAGTCGTCCAGAGTGCGGCCATCCTCG 457905
Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617
|| ||||| |||||||| || | | ||| || ||||| | | ||||||||||| |
Sbjct 457904 AGCTGTTTCCCGGCAAAGATGAGCCTCTGCTGATCCGGTGAGATGCCCTCCTTGTCATGG 457845
Query 34618 ATCTTTTGTTTTAACGAT--AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTT 34675
||| |||| ||||| ||| || |||||| ||||||||| |||| ||| || || |
Sbjct 457844 ATC-TTTGCTTTAA-GATTGGCGATCGTGTCTGAGCTCTCCACCTCCAGGGTGATGGTGT 457787
Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| ||||| | ||||| |||||||| |||||
Sbjct 457786 TTCCGGTGAGGGTTTTGACAAAAATTTGCAT 457756
>seq2973
Length=40044
Score = 86.0 bits (94), Expect = 4e-12
Identities = 112/154 (73%), Gaps = 1/154 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
||||| | || || | ||| | |||||||| |||||| || ||||| || || | |
Sbjct 14961 CCGCCACGGAGGCGGAGCACTAGGTGGAGAGTCGACTCCTTCTGTATGTTGTAGTCCGCA 14902
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || |||| || || ||||| ||||| || |||| | || |||||||||||
Sbjct 14901 AGCGTACGGCCGTCCTCCAGCTGTTTCCCGGCGAAGATTAGCCTTTGCTGGTCCGGCGGG 14842
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG 34633
| |||||||||||| ||| |||| ||| |||
Sbjct 14841 ATCCCCTCCTTGTCT-TGAATCTTTGCTTTCACG 14809
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314701756167347
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