Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq8 122 5e-23 seq6 116 2e-21 seq9 111 1e-19 seq1 111 1e-19 seq11 102 5e-17 seq5 100 2e-16 seq2973 86.0 4e-12 >seq8 Length=35439739 Score = 122 bits (134), Expect = 5e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || || | || ||||| |||||| ||| |||||| || ||||| ||||| | | Sbjct 4858223 CCTCCCCTGAGCCTCAGCACCAGATGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCA 4858164 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| || ||||| || ||||| || | | || ||||||||||| Sbjct 4858163 AGAGTGCGGCCGTCTTCGAGCTGTTTGCCTGCAAAGATGAGCCTTTGCTGGTCCGGCGGG 4858104 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || ||| | |||||||| |||||| || Sbjct 4858103 ATGCCCTCCTTGTCCTGGATC-TTGGCCTTGACGTTGTCGATTGTGTCCGAGCTCTCGAC 4858045 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| ||| || || || || || | || ||||| || ||||||||| Sbjct 4858044 CTCCAAGGTAATGGTCTTCCCAGTGAGAGTCTTCACGAAGATCTGCATG 4857996 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || || | || ||||| ||| || ||| |||||| ||||||||||| || | Sbjct 1222288 CCTCCCCTGAGTCTCAGCACCAGATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGCC 1222347 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | || || || || || |||||||| || | | ||| |||||||| || Sbjct 1222348 AAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGG 1222407 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | |||||| | || ||||| |||||| || Sbjct 1222408 ATGCCCTCCTTGTCCTGGATC-TTGGCCTTAACGTTGTCGATCGTGTCCGAGCTCTCGAC 1222466 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || ||||| | || |||||||| |||||||| Sbjct 1222467 CTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 1222514 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||||| || |||||| |||||| ||||| || ||||| | || || || Sbjct 1222069 AGGCGGAGCACCAGGTGAAGAGTGGACTCCTTCTGAATATTGTAATCGGCCAGGGTGCGA 1222128 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || || ||||| || | | ||| |||||||| || | |||||| Sbjct 1222129 CCGTCCTCGAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGTGGAATACCCTCC 1222188 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| |||| |||||| | || ||||| |||||| || |||| ||| Sbjct 1222189 TTGTCCTGGATC-TTTGCCTTAACGTTGTCGATCGTGTCAGAGCTCTCAACCTCCAGGGT 1222247 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || || || || |||||||| Sbjct 1222248 GATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 1222286 Score = 96.9 bits (106), Expect = 2e-15 Identities = 150/209 (72%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| ||| |||||| |||||||| || || | || ||||| | || || || || Sbjct 26900833 TGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCCAGCTGC 26900892 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || ||||| || || | |||||| || |||||||| | ||||||||||| ||| || Sbjct 26900893 TTTCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTC-CTGAATCTT 26900951 Query 34624 TGTTTTAACGAT-AAAATTGTGT-CTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 | || ||| | ||| |||| | || | ||||| || | ||| ||||| || || | Sbjct 26900952 GGCCTTCACGTTGTCAATCGTGTCCGACGAT-TCCACCTCGAGGGTGATCGTCTTCCCCG 26901010 Query 34682 TTAACGTTTTCACAAAAATCTGCATGTTG 34710 | | ||| ||||| || |||||||| ||| Sbjct 26901011 TCAGCGTCTTCACGAAGATCTGCATCTTG 26901039 Score = 95.1 bits (104), Expect = 8e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| ||| |||||| |||||||| || || | || || || |||| || || || Sbjct 4857971 TGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGC 4857912 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || || ||||| || | | || |||||||| || | ||||||||||| |||| || Sbjct 4857911 TTGCCTGCAAAGATGAGCCTTTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATC-TT 4857853 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | ||||| | || ||||| ||| || || |||| |||||| || || ||||| Sbjct 4857852 GGCCTTAACATTGTCGATGGTGTCAGAGCTTTCGACCTCCAAGGTTATGGTCTTCCCGGT 4857793 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | || |||||||| |||||||| Sbjct 4857792 GAGGGTCTTCACAAAGATCTGCAT 4857769 Score = 84.2 bits (92), Expect = 1e-11 Identities = 160/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 ||||||| | || || | || | ||||| ||| |||||| || ||||| || || | Sbjct 32122460 CGCCGCCGCGGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 32122401 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 || || || |||| || || || || ||||| || || | | ||| |||||||||| Sbjct 32122400 CGAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCCGGCG 32122341 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCC 34656 | | || |||||||| |||| || | || ||| || || ||||| | |||| Sbjct 32122340 GGATCCCTTCCTTGTCCTGGATC-TTGGCCTTGACGTTATCGATCGTGTCCGAGGACTCC 32122282 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || || | ||| || || || || || | || ||||| || |||||||| || Sbjct 32122281 ACCTCGAGGGTGATTGTCTTCCCCGTAAGGGTCTTCACGAAGATCTGCATCTT 32122229 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| ||| |||||| ||||||||||| || | | || || ||||||| || || Sbjct 1223255 TGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGCCAAGGTGCGGCCGTCTTCGAGCTGC 1223314 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 ||||| || || || | | ||| ||||| || || | |||||||||||| |||| || Sbjct 1223315 TTACCAGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTGGATC-TT 1223373 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | ||||| | || ||||| | || || || | ||| || || || || || Sbjct 1223374 GGCCTTAACATTGTCGATGGTGTCGGAGGATTCAACCTCTAGGGTGATGGTCTTGCCAGT 1223433 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | |||||||| || |||||||| Sbjct 1223434 GAGGGTTTTCACGAAGATCTGCAT 1223457 >seq6 Length=34899179 Score = 116 bits (128), Expect = 2e-21 Identities = 161/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| || |||||| ||||| || |||||||| |||| ||||| ||| Sbjct 13154761 AGACGAAGGACCAGGTGAAGAGTGGATTCCTTCTGGATGTTATAGTCTGCCAGTGTGCGC 13154702 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || ||||| ||||| |||| | ||||||||| || || | ||||||| Sbjct 13154701 CCATCCTCGAGCTGCTTACCCGCAAAGATTAGCCTCTGTTGGTCTGGTGGGATTCCCTCC 13154642 Query 34609 TTGT-CTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGG 34666 |||| |||| ||| |||| || || | || ||||| |||||| || |||| | Sbjct 13154641 TTGTCCTGT-ATC-TTTGCCTTCACATTGTCGATAGTGTCCGAGCTCTCAACCTCCAGAG 13154584 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || || || || | |||||||||||||| ||||| Sbjct 13154583 TGATGGTCTTCCCCGTGAGGGTTTTCACAAAAATTTGCAT 13154544 >seq9 Length=34148863 Score = 111 bits (122), Expect = 1e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||||| || || ||| ||||| |||||||| ||||||| || || ||| Sbjct 33548978 AGGCGGAGCACCAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGC 33549037 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || || ||||| || | | ||| || ||||| || | |||||| Sbjct 33549038 CCGTCCTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCCGGTGGAATCCCCTCC 33549097 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| |||| || || || ||| ||||| |||||||| |||| ||| Sbjct 33549098 TTGTCCTGGATC-TTTGCCTTGACATTATCAATCGTGTCCGAACTCTCCACCTCCAAGGT 33549156 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | ||| || ||||| ||||||||| Sbjct 33549157 AATGGTCTTCCCTGTGAGCGTCTTAACAAAGATCTGCATG 33549196 Score = 96.9 bits (106), Expect = 2e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||||| || || ||| ||||| |||||||| ||||||| || || || Sbjct 33541426 AGGCGGAGCACCAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGG 33541367 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || || || || || | | ||| || ||||| || | |||||| Sbjct 33541366 CCGTCCTCTAGCTGCTTCCCAGCGAAGATGAGCCTCTGCTGATCCGGTGGAATCCCCTCC 33541307 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | || ||||| ||||||||| |||| ||| Sbjct 33541306 TTGTCCTGGATC-TTCGCCTTGACGTTGTCGATCGTGTCCGAGCTCTCCACCTCCAAGGT 33541248 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || ||||| | || || ||||| ||||||||| Sbjct 33541247 AATGGTCTTCCCGGTGAGGGTCTTAACAAAGATCTGCATG 33541208 >seq1 Length=27573629 Score = 111 bits (122), Expect = 1e-19 Identities = 166/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | ||| || | || | ||||| ||| |||||| || ||||| || |||| Sbjct 19376094 CGCCCCCACGAAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTG 19376153 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 || || ||| |||| || || || || ||||||||||| | ||||| |||||||||| Sbjct 19376154 CGAGGGTGCGCCCGTCCTCGAGCTGCTTCCCGGCAAATATGAGGCGCTGCTGGTCCGGCG 19376213 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | ||||||||||| |||| || | || ||| | || ||||| |||| Sbjct 19376214 GGATCCCCTCCTTGTCCTGGATC-TTCGCCTTGACGTTGTCGATGGTGTCCGAAGACTCC 19376272 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || || | ||| ||||| || ||||| | || ||||| || |||||||| || Sbjct 19376273 ACCTCGAGGGTGATCGTCTTCCCGGTGAGGGTCTTCACGAAGATCTGCATCTT 19376325 >seq11 Length=25514024 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 ||||||| | || || | ||||| ||||| || |||||| || |||||||| || | Sbjct 15140709 CGCCGCCGCGGAGGCGGAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTATAGTCGG 15140768 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 || || || |||| || || || || ||||| || || | ||||| |||||||||| Sbjct 15140769 CGAGGGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGGCGCTGCTGGTCCGGCG 15140828 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | ||||||||||| |||| || | || ||| | || ||||| |||| Sbjct 15140829 GGATGCCCTCCTTGTCCTGGATC-TTCGCCTTCACGTTGTCGATCGTGTCCGACGACTCC 15140887 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | ||| ||||| || || || || || ||||| || |||||||| Sbjct 15140888 ACCTCAAGGGTGATCGTCTTCCCCGTCAAAGTCTTCACGAAGATCTGCAT 15140937 >seq5 Length=29377369 Score = 100 bits (110), Expect = 2e-16 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||| || |||||| ||||| |||||| | || || || || || | || || Sbjct 457964 ACCAGGTGAAGAGTGGATTCCTTCTGAATGCTGTAGTCGTCCAGAGTGCGGCCATCCTCG 457905 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || ||||| |||||||| || | | ||| || ||||| | | ||||||||||| | Sbjct 457904 AGCTGTTTCCCGGCAAAGATGAGCCTCTGCTGATCCGGTGAGATGCCCTCCTTGTCATGG 457845 Query 34618 ATCTTTTGTTTTAACGAT--AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTT 34675 ||| |||| ||||| ||| || |||||| ||||||||| |||| ||| || || | Sbjct 457844 ATC-TTTGCTTTAA-GATTGGCGATCGTGTCTGAGCTCTCCACCTCCAGGGTGATGGTGT 457787 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | ||||| | ||||| |||||||| ||||| Sbjct 457786 TTCCGGTGAGGGTTTTGACAAAAATTTGCAT 457756 >seq2973 Length=40044 Score = 86.0 bits (94), Expect = 4e-12 Identities = 112/154 (73%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | || || | ||| | |||||||| |||||| || ||||| || || | | Sbjct 14961 CCGCCACGGAGGCGGAGCACTAGGTGGAGAGTCGACTCCTTCTGTATGTTGTAGTCCGCA 14902 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || ||||| ||||| || |||| | || ||||||||||| Sbjct 14901 AGCGTACGGCCGTCCTCCAGCTGTTTCCCGGCGAAGATTAGCCTTTGCTGGTCCGGCGGG 14842 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG 34633 | |||||||||||| ||| |||| ||| ||| Sbjct 14841 ATCCCCTCCTTGTCT-TGAATCTTTGCTTTCACG 14809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314701756167347