Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq10 123 2e-23 seq8 116 3e-21 seq6 104 2e-17 seq9 96.9 3e-15 >seq10 Length=33665772 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| ||||| | || ||||| ||||||||| | || || |||||||| ||| | ||| Sbjct 14516247 ATGCAAATATTCATTAAGACTCTCACCGGCAAGACCATCACCCTTGAAGTTGAATCTTCC 14516188 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| ||||||||||| ||||| || || ||||| || || Sbjct 14516187 GATACTATTGATAATGTGAAAGCTAAAATTCAAGATAAAGAGGGTATTCCACCGGACCAG 14516128 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | ||||| | || || |||||||| || || || ||| || | || ||||| Sbjct 14516127 CAAAGGTTAATCTTTGCTGGGAAACAATTAGAGGATGGTCGCACCCTTGCGGACTACAAT 14516068 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || |||||||| ||| | || |||| | || | || |||||| Sbjct 14516067 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTCCGTGGTGGC 14516020 Score = 89.7 bits (98), Expect = 4e-13 Identities = 110/149 (74%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 26970 ttttttAATTTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACT 27029 ||| ||| ||||| | |||||||||||||| || || || ||||||||| | || || Sbjct 14517140 TTTATTATTTTATTCAG-ATGCAGATATTTGTTAAGACACTAACCGGCAAGACCATCACC 14517082 Query 27030 CTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAA 27089 ||||| || ||| | || ||| | ||||| | || || || ||||||||||| || Sbjct 14517081 CTTGAGGTTGAATCTTCTGACACTATTGATAATGTAAAGGCCAAGATTCAAGACAAGGAG 14517022 Query 27090 GGCATACCACCCGATCAACAGCGTTTAAT 27118 ||||| || || || |||||| | || || Sbjct 14517021 GGCATCCCCCCAGACCAACAGAGGTTGAT 14516993 >seq8 Length=35439739 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | || || || || |||||| |||| Sbjct 26901035 ATGCAGATCTTCGTGAAGACGCTGACGGGGAAGACGATCACCCTCGAGGTGGAATCGTCG 26900976 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | || || || ||||| ||||| || ||||| || || ||||| Sbjct 26900975 GACACGATTGACAACGTGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCGGATCAG 26900916 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| || || |||| || | ||| | |||| |||||| Sbjct 26900915 CAGCGTCTCATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGAACCCTCGCCGACTACAAC 26900856 Query 27168 ATTCAAAAGGAGTCGAC 27184 ||||| |||||||| || Sbjct 26900855 ATTCAGAAGGAGTCCAC 26900839 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||||| || || ||| | ||||| | || || || || Sbjct 4857996 CATGCAGATCTTCGTGAAGACTCTCACTGGGAAGACCATTACCTTGGAGGTCGAGAGCTC 4858055 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | ||||| || || || ||||| || ||||| || || || || Sbjct 4858056 GGACACAATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 4858115 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || | | || | || |||||||| | |||||| | || || |||||||||| Sbjct 4858116 GCAAAGGCTCATCTTTGCAGGCAAACAGCTCGAAGACGGCCGCACTCTTGCCGATTACAA 4858175 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||| || |||||||| || | ||| |||| Sbjct 4858176 CATCCAGAAGGAGTCCACGCTCCATCTGGT 4858205 >seq6 Length=34899179 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||| || || ||| | || || ||||| || ||| | || Sbjct 13144163 ATGCAAATCTTTGTCAAAACTCTCACTGGAAAGACGATCACCCTTGAGGTTGAATCCTCT 13144222 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| || || || || || || || ||||| || || || Sbjct 13144223 GACACCATTGACAATGTCAAAGCCAAGATCCAGGATAAGGAGGGAATACCCCCGGACCAG 13144282 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || |||| || ||||| ||| | || || | ||| || | || |||||| Sbjct 13144283 CAAAGGTTGATATTTGCTGGCAAGCAACTTGAGGATGGCCGCACCCTTGCTGACTACAAC 13144342 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| ||| | || | || | || | || |||||||| Sbjct 13144343 ATCCAAAAGGAGTCCACCCTCCACCTTGTACTCCGCCTCCGTGGTGGCAT 13144392 >seq9 Length=34148863 Score = 96.9 bits (106), Expect = 3e-15 Identities = 169/245 (69%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || || || ||| | ||||| | || ||||| || Sbjct 33549196 CATGCAGATCTTTGTTAAGACGCTCACAGGGAAGACCATTACCTTGGAGGTGGAGAGTTC 33549137 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| ||||||| | ||||| ||| || || ||||| || || || ||||| ||||| Sbjct 33549136 GGACACGATTGATAATGTCAAGGCAAAGATCCAGGACAAGGAGGGGATTCCACCGGATCA 33549077 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || || || || |||| ||| | ||| | | |||||||| Sbjct 33549076 GCAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAGGACGGGCGCACCCTGGCAGATTACAA 33549017 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAACAAACAC 27226 |||||| ||||| || ||| | || |||| | || | || || || | || ||| | Sbjct 33549016 CATTCAGAAGGAATCCACCCTTCACCTGGTGCTCCGCCTCCGCGGGGG--TCACTAACCC 33548959 Query 27227 TTTTG 27231 ||||| Sbjct 33548958 TTTTG 33548954 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || ||||| ||| | ||||| | || ||||| || Sbjct 33541208 CATGCAGATCTTTGTTAAGACCCTCACCGGGAAGACCATTACCTTGGAGGTGGAGAGCTC 33541267 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| || | ||||| || || || ||||| || || || ||||| ||||| Sbjct 33541268 GGACACGATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGGATTCCACCGGATCA 33541327 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | ||| || || || | || ||| | ||| | | |||||||| Sbjct 33541328 GCAGAGGCTCATCTTCGCTGGGAAGCAGCTAGAGGACGGCCGCACCCTGGCAGATTACAA 33541387 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||| ||||| || ||| | || |||| | || | || ||||| Sbjct 33541388 CATTCAGAAGGAATCCACCCTTCACCTGGTGCTCCGCCTCCGCGGTGG 33541435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434878936591680