Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq10 123 2e-23
seq8 116 3e-21
seq6 104 2e-17
seq9 96.9 3e-15
>seq10
Length=33665772
Score = 123 bits (136), Expect = 2e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| ||||| | || ||||| ||||||||| | || || |||||||| ||| | |||
Sbjct 14516247 ATGCAAATATTCATTAAGACTCTCACCGGCAAGACCATCACCCTTGAAGTTGAATCTTCC 14516188
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | || ||| ||||||||||| ||||| || || ||||| || ||
Sbjct 14516187 GATACTATTGATAATGTGAAAGCTAAAATTCAAGATAAAGAGGGTATTCCACCGGACCAG 14516128
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| | ||||| | || || |||||||| || || || ||| || | || |||||
Sbjct 14516127 CAAAGGTTAATCTTTGCTGGGAAACAATTAGAGGATGGTCGCACCCTTGCGGACTACAAT 14516068
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215
|| || |||||||| ||| | || |||| | || | || ||||||
Sbjct 14516067 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTCCGTGGTGGC 14516020
Score = 89.7 bits (98), Expect = 4e-13
Identities = 110/149 (74%), Gaps = 1/149 (1%)
Strand=Plus/Minus
Query 26970 ttttttAATTTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACT 27029
||| ||| ||||| | |||||||||||||| || || || ||||||||| | || ||
Sbjct 14517140 TTTATTATTTTATTCAG-ATGCAGATATTTGTTAAGACACTAACCGGCAAGACCATCACC 14517082
Query 27030 CTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAA 27089
||||| || ||| | || ||| | ||||| | || || || ||||||||||| ||
Sbjct 14517081 CTTGAGGTTGAATCTTCTGACACTATTGATAATGTAAAGGCCAAGATTCAAGACAAGGAG 14517022
Query 27090 GGCATACCACCCGATCAACAGCGTTTAAT 27118
||||| || || || |||||| | || ||
Sbjct 14517021 GGCATCCCCCCAGACCAACAGAGGTTGAT 14516993
>seq8
Length=35439739
Score = 116 bits (128), Expect = 3e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || ||||| || ||| | || || || || |||||| ||||
Sbjct 26901035 ATGCAGATCTTCGTGAAGACGCTGACGGGGAAGACGATCACCCTCGAGGTGGAATCGTCG 26900976
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| ||||||| | || || || ||||| ||||| || ||||| || || |||||
Sbjct 26900975 GACACGATTGACAACGTGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCGGATCAG 26900916
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | |||||| || || |||| || | ||| | |||| ||||||
Sbjct 26900915 CAGCGTCTCATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGAACCCTCGCCGACTACAAC 26900856
Query 27168 ATTCAAAAGGAGTCGAC 27184
||||| |||||||| ||
Sbjct 26900855 ATTCAGAAGGAGTCCAC 26900839
Score = 82.4 bits (90), Expect = 7e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || || ||||| || || ||| | ||||| | || || || ||
Sbjct 4857996 CATGCAGATCTTCGTGAAGACTCTCACTGGGAAGACCATTACCTTGGAGGTCGAGAGCTC 4858055
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | || || | ||||| || || || ||||| || ||||| || || || ||
Sbjct 4858056 GGACACAATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 4858115
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|| | | || | || |||||||| | |||||| | || || ||||||||||
Sbjct 4858116 GCAAAGGCTCATCTTTGCAGGCAAACAGCTCGAAGACGGCCGCACTCTTGCCGATTACAA 4858175
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGT 27196
||| || |||||||| || | ||| ||||
Sbjct 4858176 CATCCAGAAGGAGTCCACGCTCCATCTGGT 4858205
>seq6
Length=34899179
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| |||||||| || || ||| | || || ||||| || ||| | ||
Sbjct 13144163 ATGCAAATCTTTGTCAAAACTCTCACTGGAAAGACGATCACCCTTGAGGTTGAATCCTCT 13144222
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||| | |||||| || || || || || || || ||||| || || ||
Sbjct 13144223 GACACCATTGACAATGTCAAAGCCAAGATCCAGGATAAGGAGGGAATACCCCCGGACCAG 13144282
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| | || |||| || ||||| ||| | || || | ||| || | || ||||||
Sbjct 13144283 CAAAGGTTGATATTTGCTGGCAAGCAACTTGAGGATGGCCGCACCCTTGCTGACTACAAC 13144342
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| ||||||||||| ||| | || | || | || | || ||||||||
Sbjct 13144343 ATCCAAAAGGAGTCCACCCTCCACCTTGTACTCCGCCTCCGTGGTGGCAT 13144392
>seq9
Length=34148863
Score = 96.9 bits (106), Expect = 3e-15
Identities = 169/245 (69%), Gaps = 2/245 (1%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| ||||| || || || || || ||| | ||||| | || ||||| ||
Sbjct 33549196 CATGCAGATCTTTGTTAAGACGCTCACAGGGAAGACCATTACCTTGGAGGTGGAGAGTTC 33549137
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| ||||||| | ||||| ||| || || ||||| || || || ||||| |||||
Sbjct 33549136 GGACACGATTGATAATGTCAAGGCAAAGATCCAGGACAAGGAGGGGATTCCACCGGATCA 33549077
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||| | | || | || || || || |||| ||| | ||| | | ||||||||
Sbjct 33549076 GCAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAGGACGGGCGCACCCTGGCAGATTACAA 33549017
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAACAAACAC 27226
|||||| ||||| || ||| | || |||| | || | || || || | || ||| |
Sbjct 33549016 CATTCAGAAGGAATCCACCCTTCACCTGGTGCTCCGCCTCCGCGGGGG--TCACTAACCC 33548959
Query 27227 TTTTG 27231
|||||
Sbjct 33548958 TTTTG 33548954
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| ||||| || || || ||||| ||| | ||||| | || ||||| ||
Sbjct 33541208 CATGCAGATCTTTGTTAAGACCCTCACCGGGAAGACCATTACCTTGGAGGTGGAGAGCTC 33541267
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| |||| || | ||||| || || || ||||| || || || ||||| |||||
Sbjct 33541268 GGACACGATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGGATTCCACCGGATCA 33541327
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||| | | || | ||| || || || | || ||| | ||| | | ||||||||
Sbjct 33541328 GCAGAGGCTCATCTTCGCTGGGAAGCAGCTAGAGGACGGCCGCACCCTGGCAGATTACAA 33541387
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|||||| ||||| || ||| | || |||| | || | || |||||
Sbjct 33541388 CATTCAGAAGGAATCCACCCTTCACCTGGTGCTCCGCCTCCGCGGTGG 33541435
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434878936591680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |