Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq2660 154 2e-32 seq9 132 6e-26 seq2678 125 9e-24 seq1382 118 1e-21 seq1042 102 1e-16 seq1024 100 3e-16 seq10 100 3e-16 seq1063 98.7 1e-15 seq4 96.9 4e-15 >seq2660 Length=2080 Score = 154 bits (170), Expect = 2e-32 Identities = 196/270 (73%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 |||| |||| | || ||| |||| |||||| || ||||||| | | ||||||| Sbjct 288 ACCTATAACTATTCAATATGCTTATGAGAAATCAATTACGTCAGAACGTCTCGGTGGTCG 229 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || |||| ||| ||||| || ||||| || || || || ||||| | |||||||| || Sbjct 228 AATTCACTTTGAATTTGATAAATGTATTGCTTGCGAAGTATGTGTTCGTGTATGCCCAAT 169 Query 19415 CAATCTACCAGTGGTGGATTGGGTGATGAACAAACAGACAAAGAAGAAAGAACTTAGAAA 19474 ||||||| || || |||||| || | | | | | || |||||| || | || Sbjct 168 AGATCTACCTGTTGTTGATTGGAGATTGGAAAGAGATATGAAAAAGAAACAATTGCTTAA 109 Query 19475 TTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCAAC 19534 |||| || || || || | ||||| || || |||||||| || |||||||| ||||| Sbjct 108 TTATAGTATTGATTTCGGGGTCTGTATATTTTGTGGTAACTGTGTCGAGTATTGTCCAAC 49 Query 19535 AAACTGTCTATCCATGACAGAAGAATATGA 19564 ||||||| |||| ||||| ||||||||||| Sbjct 48 AAACTGTTTATCAATGACTGAAGAATATGA 19 >seq9 Length=34148863 Score = 132 bits (146), Expect = 6e-26 Identities = 166/225 (74%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 176458 GAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTA 176517 |||||||||| | || || |||||||||||||| ||||||||| || || || || Sbjct 1506935 GAACTTAGTTTCTATCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTT 1506994 Query 176518 TCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGT 176577 | || || | || |||||| | |||| || | ||||||||| ||||||||||||| Sbjct 1506995 GCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGT 1507054 Query 176578 ATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGT-TTGTATTCCAAGCAGAGCACAA 176636 |||||| | || || || | | |||||||| |||| ||||||| | ||||| ||||| Sbjct 1507055 ATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTATTGTATTTCTGGCAGAACACAA 1507113 Query 176637 CATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTT 176681 ||| || ||||| | | || ||| | || ||| | ||||| || Sbjct 1507114 CATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGTGTATT 1507158 >seq2678 Length=2076 Score = 125 bits (138), Expect = 9e-24 Identities = 179/252 (71%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 ||||||||| | || |||||||| |||||| || ||||||| | | | |||||| Sbjct 280 ACCTGTAACTATTCAATATCCTTATGAGAAATCAATTACGTCAGAACGTTTCGATGGTCG 221 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || |||| ||| ||||| || ||||| || || || || ||||| | ||||||| || Sbjct 220 AATTCACTTTGAATTTGATAAATGTATTGCTTGCGAAGTATGTGTTCGTGTATGCCTAAT 161 Query 19415 CAATCTACCAGTGGTGGATTGGGTGATGAACAAACAGACAAAGAAGAAAGAACTTAGAAA 19474 ||||| | | || |||||| || | | | | | || |||||| || | || Sbjct 160 AGATCTATCTATTGTTGATTGGAGATTGGAAAGAGATATGAAAAAGAAACAATTGCTTAA 101 Query 19475 TTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCAAC 19534 |||| || || || || | ||||| || || |||||||| || |||||||| ||||| Sbjct 100 TTATAGTATTGATTTCGGGGTCTGTATATTTTGTGGTAACTGTGTCGAGTATTGTCCAAC 41 Query 19535 AAACTGTCTATC 19546 ||||||| |||| Sbjct 40 AAACTGTTTATC 29 >seq1382 Length=172696 Score = 118 bits (130), Expect = 1e-21 Identities = 235/342 (69%), Gaps = 17/342 (5%) Strand=Plus/Plus Query 176632 CACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCA--GGTGTGTTTGGTGGAT 176689 |||||||| || ||||| ||||| | ||| | || |||| ||||| || || || | Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556 Query 176690 CTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCG 176749 | || ||| || ||||| || | || || ||| | | || || || || | Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616 Query 176750 AAAACGAATCA-CAAAACTACGGTTACAAATTCGGACAAGAAGAAG----AGACATACAA 176804 |||||||||| || | | ||||||| |||||| |||||||||| |||| ||||| Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675 Query 176805 CA-----TTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTC 176859 | |||||||||| || ||||| || | || | ||| |||| |||||| |||| Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735 Query 176860 AATAACTCAAG--AAGTCTTCACTT--CTTCCTTGCAGCATTCCCAGTTGTTTGCATCTG 176915 || ||||| | | |||| || | ||| | ||||| | |||||| || | ||||| Sbjct 123736 AACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCTG 123795 Query 176916 GTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAA 176957 | | || || | ||| || |||| ||||| |||||||| || Sbjct 123796 GGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 >seq1042 Length=564079 Score = 102 bits (112), Expect = 1e-16 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 176554 GGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATG 176613 ||||||||| | | || ||||||||||||| || || || ||||| ||| |||| ||| Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801 Query 176614 TTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATT 176654 |||||||||| || ||||||||||| || ||||||||||| Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATT 550760 >seq1024 Length=717246 Score = 100 bits (110), Expect = 3e-16 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 177010 ACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAAT 177069 || |||| |||||| | |||||||| ||||||||||||||||| ||||| || |||||| Sbjct 156791 ACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAAT 156850 Query 177070 GCTCACAACTTCCCACTTGACCT 177092 |||||||||||||| || ||||| Sbjct 156851 GCTCACAACTTCCCTCTAGACCT 156873 >seq10 Length=33665772 Score = 100 bits (110), Expect = 3e-16 Identities = 226/334 (68%), Gaps = 23/334 (7%) Strand=Plus/Plus Query 176572 GATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAG 176631 |||||||||||| | || || || ||||| |||||||| ||| |||||||||| ||||| Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954 Query 176632 CACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAG--CAGGTGTGTTTGGTGGAT 176689 |||||||| || ||||| | ||| || ||| | || |||| | ||||| || || Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 4333009 Query 176690 CTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCG 176749 | || | | ||||| || | || | |||| | | || || | || | Sbjct 4333010 CCCTAGT----ACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065 Query 176750 AAAACGAAT-CACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGAC------ATAC 176802 ||||||||| | | | | || || |||||| |||| |||||||| ||| Sbjct 4333066 AAAACGAATCCGCGTTAGCA-AGTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAG 4333124 Query 176803 AACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAAT 176862 | |||||||| ||| || ||||| || | || | | || ||| |||||| |||||| Sbjct 4333125 AGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAAC 4333184 Query 176863 AACTCAAGAAGTCTT--CACTTCTTCCTTGCAGC 176894 ||||| || |||| || |||||| | || || Sbjct 4333185 AACTC--GACTTCTTGACATTTCTTCTTGGCTGC 4333216 >seq1063 Length=431445 Score = 98.7 bits (108), Expect = 1e-15 Identities = 209/306 (68%), Gaps = 21/306 (7%) Strand=Plus/Minus Query 176572 GATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAG 176631 |||||||||||| |||| || || ||||| ||| |||| ||| ||||||| | ||||| Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166 Query 176632 CACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAG--CAGGTGTGTTTGGTGGAT 176689 |||||||| || ||||| | ||| || ||| | || |||| | ||||| || || Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 54111 Query 176690 CTCTTTTCTCAGCAATGCACGGAAGTCTTGTTAC-TTCTTCACTTGTTAGAGAGACAACC 176748 | || | | ||||| || |||| | | |||| | | || || | || Sbjct 54110 CCCTAGT----ACTATGCATGG-TTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACT 54056 Query 176749 GAAAACGAAT-CACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGAC------ATA 176801 |||||||||| | | | | || || |||||| |||| |||||||| ||| Sbjct 54055 GAAAACGAATCCGCGTTAGCA-AGTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 53997 Query 176802 CAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAA 176861 | ||||||||||| || ||||| || | || | |||||||| |||||| |||||| Sbjct 53996 GAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAA 53937 Query 176862 TAACTC 176867 ||||| Sbjct 53936 CAACTC 53931 >seq4 Length=30051516 Score = 96.9 bits (106), Expect = 4e-15 Identities = 123/168 (73%), Gaps = 6/168 (4%) Strand=Plus/Plus Query 176929 GGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGAC 176988 ||| || |||| ||||| |||||||| || |||||||| |||||||| || || | ||| Sbjct 1282762 GGTATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGAC 1282821 Query 176989 AACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATG 177048 | ||| || ||| ||| ||| |||||| | || ||||| | ||||||||| Sbjct 1282822 AGTCAGGGTCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATG 1282879 Query 177049 GA----AGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCT 177092 || ||| || || || ||||||||||| |||||||| | ||||| Sbjct 1282880 GATGGAAGTAATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603439640426880