Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_028663.1
Length=188632
Score E
Sequences producing significant alignments: (Bits) Value
seq2660 154 2e-32
seq9 132 6e-26
seq2678 125 9e-24
seq1382 118 1e-21
seq1042 102 1e-16
seq1024 100 3e-16
seq10 100 3e-16
seq1063 98.7 1e-15
seq4 96.9 4e-15
>seq2660
Length=2080
Score = 154 bits (170), Expect = 2e-32
Identities = 196/270 (73%), Gaps = 0/270 (0%)
Strand=Plus/Minus
Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354
|||| |||| | || ||| |||| |||||| || ||||||| | | |||||||
Sbjct 288 ACCTATAACTATTCAATATGCTTATGAGAAATCAATTACGTCAGAACGTCTCGGTGGTCG 229
Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414
|| |||| ||| ||||| || ||||| || || || || ||||| | |||||||| ||
Sbjct 228 AATTCACTTTGAATTTGATAAATGTATTGCTTGCGAAGTATGTGTTCGTGTATGCCCAAT 169
Query 19415 CAATCTACCAGTGGTGGATTGGGTGATGAACAAACAGACAAAGAAGAAAGAACTTAGAAA 19474
||||||| || || |||||| || | | | | | || |||||| || | ||
Sbjct 168 AGATCTACCTGTTGTTGATTGGAGATTGGAAAGAGATATGAAAAAGAAACAATTGCTTAA 109
Query 19475 TTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCAAC 19534
|||| || || || || | ||||| || || |||||||| || |||||||| |||||
Sbjct 108 TTATAGTATTGATTTCGGGGTCTGTATATTTTGTGGTAACTGTGTCGAGTATTGTCCAAC 49
Query 19535 AAACTGTCTATCCATGACAGAAGAATATGA 19564
||||||| |||| ||||| |||||||||||
Sbjct 48 AAACTGTTTATCAATGACTGAAGAATATGA 19
>seq9
Length=34148863
Score = 132 bits (146), Expect = 6e-26
Identities = 166/225 (74%), Gaps = 2/225 (1%)
Strand=Plus/Plus
Query 176458 GAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTA 176517
|||||||||| | || || |||||||||||||| ||||||||| || || || ||
Sbjct 1506935 GAACTTAGTTTCTATCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTT 1506994
Query 176518 TCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGT 176577
| || || | || |||||| | |||| || | ||||||||| |||||||||||||
Sbjct 1506995 GCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGT 1507054
Query 176578 ATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGT-TTGTATTCCAAGCAGAGCACAA 176636
|||||| | || || || | | |||||||| |||| ||||||| | ||||| |||||
Sbjct 1507055 ATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTATTGTATTTCTGGCAGAACACAA 1507113
Query 176637 CATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTT 176681
||| || ||||| | | || ||| | || ||| | ||||| ||
Sbjct 1507114 CATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGTGTATT 1507158
>seq2678
Length=2076
Score = 125 bits (138), Expect = 9e-24
Identities = 179/252 (71%), Gaps = 0/252 (0%)
Strand=Plus/Minus
Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354
||||||||| | || |||||||| |||||| || ||||||| | | | ||||||
Sbjct 280 ACCTGTAACTATTCAATATCCTTATGAGAAATCAATTACGTCAGAACGTTTCGATGGTCG 221
Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414
|| |||| ||| ||||| || ||||| || || || || ||||| | ||||||| ||
Sbjct 220 AATTCACTTTGAATTTGATAAATGTATTGCTTGCGAAGTATGTGTTCGTGTATGCCTAAT 161
Query 19415 CAATCTACCAGTGGTGGATTGGGTGATGAACAAACAGACAAAGAAGAAAGAACTTAGAAA 19474
||||| | | || |||||| || | | | | | || |||||| || | ||
Sbjct 160 AGATCTATCTATTGTTGATTGGAGATTGGAAAGAGATATGAAAAAGAAACAATTGCTTAA 101
Query 19475 TTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCAAC 19534
|||| || || || || | ||||| || || |||||||| || |||||||| |||||
Sbjct 100 TTATAGTATTGATTTCGGGGTCTGTATATTTTGTGGTAACTGTGTCGAGTATTGTCCAAC 41
Query 19535 AAACTGTCTATC 19546
||||||| ||||
Sbjct 40 AAACTGTTTATC 29
>seq1382
Length=172696
Score = 118 bits (130), Expect = 1e-21
Identities = 235/342 (69%), Gaps = 17/342 (5%)
Strand=Plus/Plus
Query 176632 CACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCA--GGTGTGTTTGGTGGAT 176689
|||||||| || ||||| ||||| | ||| | || |||| ||||| || || || |
Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556
Query 176690 CTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCG 176749
| || ||| || ||||| || | || || ||| | | || || || || |
Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616
Query 176750 AAAACGAATCA-CAAAACTACGGTTACAAATTCGGACAAGAAGAAG----AGACATACAA 176804
|||||||||| || | | ||||||| |||||| |||||||||| |||| |||||
Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675
Query 176805 CA-----TTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTC 176859
| |||||||||| || ||||| || | || | ||| |||| |||||| ||||
Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735
Query 176860 AATAACTCAAG--AAGTCTTCACTT--CTTCCTTGCAGCATTCCCAGTTGTTTGCATCTG 176915
|| ||||| | | |||| || | ||| | ||||| | |||||| || | |||||
Sbjct 123736 AACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCTG 123795
Query 176916 GTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAA 176957
| | || || | ||| || |||| ||||| |||||||| ||
Sbjct 123796 GGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837
>seq1042
Length=564079
Score = 102 bits (112), Expect = 1e-16
Identities = 83/101 (82%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 176554 GGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATG 176613
||||||||| | | || ||||||||||||| || || || ||||| ||| |||| |||
Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801
Query 176614 TTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATT 176654
|||||||||| || ||||||||||| || |||||||||||
Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATT 550760
>seq1024
Length=717246
Score = 100 bits (110), Expect = 3e-16
Identities = 72/83 (87%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 177010 ACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAAT 177069
|| |||| |||||| | |||||||| ||||||||||||||||| ||||| || ||||||
Sbjct 156791 ACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAAT 156850
Query 177070 GCTCACAACTTCCCACTTGACCT 177092
|||||||||||||| || |||||
Sbjct 156851 GCTCACAACTTCCCTCTAGACCT 156873
>seq10
Length=33665772
Score = 100 bits (110), Expect = 3e-16
Identities = 226/334 (68%), Gaps = 23/334 (7%)
Strand=Plus/Plus
Query 176572 GATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAG 176631
|||||||||||| | || || || ||||| |||||||| ||| |||||||||| |||||
Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954
Query 176632 CACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAG--CAGGTGTGTTTGGTGGAT 176689
|||||||| || ||||| | ||| || ||| | || |||| | ||||| || ||
Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 4333009
Query 176690 CTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCG 176749
| || | | ||||| || | || | |||| | | || || | || |
Sbjct 4333010 CCCTAGT----ACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065
Query 176750 AAAACGAAT-CACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGAC------ATAC 176802
||||||||| | | | | || || |||||| |||| |||||||| |||
Sbjct 4333066 AAAACGAATCCGCGTTAGCA-AGTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAG 4333124
Query 176803 AACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAAT 176862
| |||||||| ||| || ||||| || | || | | || ||| |||||| ||||||
Sbjct 4333125 AGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAAC 4333184
Query 176863 AACTCAAGAAGTCTT--CACTTCTTCCTTGCAGC 176894
||||| || |||| || |||||| | || ||
Sbjct 4333185 AACTC--GACTTCTTGACATTTCTTCTTGGCTGC 4333216
>seq1063
Length=431445
Score = 98.7 bits (108), Expect = 1e-15
Identities = 209/306 (68%), Gaps = 21/306 (7%)
Strand=Plus/Minus
Query 176572 GATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAG 176631
|||||||||||| |||| || || ||||| ||| |||| ||| ||||||| | |||||
Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166
Query 176632 CACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAG--CAGGTGTGTTTGGTGGAT 176689
|||||||| || ||||| | ||| || ||| | || |||| | ||||| || ||
Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 54111
Query 176690 CTCTTTTCTCAGCAATGCACGGAAGTCTTGTTAC-TTCTTCACTTGTTAGAGAGACAACC 176748
| || | | ||||| || |||| | | |||| | | || || | ||
Sbjct 54110 CCCTAGT----ACTATGCATGG-TTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACT 54056
Query 176749 GAAAACGAAT-CACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGAC------ATA 176801
|||||||||| | | | | || || |||||| |||| |||||||| |||
Sbjct 54055 GAAAACGAATCCGCGTTAGCA-AGTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 53997
Query 176802 CAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAA 176861
| ||||||||||| || ||||| || | || | |||||||| |||||| ||||||
Sbjct 53996 GAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAA 53937
Query 176862 TAACTC 176867
|||||
Sbjct 53936 CAACTC 53931
>seq4
Length=30051516
Score = 96.9 bits (106), Expect = 4e-15
Identities = 123/168 (73%), Gaps = 6/168 (4%)
Strand=Plus/Plus
Query 176929 GGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGAC 176988
||| || |||| ||||| |||||||| || |||||||| |||||||| || || | |||
Sbjct 1282762 GGTATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGAC 1282821
Query 176989 AACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATG 177048
| ||| || ||| ||| ||| |||||| | || ||||| | |||||||||
Sbjct 1282822 AGTCAGGGTCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATG 1282879
Query 177049 GA----AGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCT 177092
|| ||| || || || ||||||||||| |||||||| | |||||
Sbjct 1282880 GATGGAAGTAATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 603439640426880
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