Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq8 84.2 2e-11 >seq8 Length=35439739 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/215 (69%), Gaps = 12/215 (6%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || ||||| ||||| |||||||| ||||| | || ||||| ||| | Sbjct 4857997 ATGCAGATCTTCGTGAAGACTCTCACTGGGAAGACCATTACCTTGGAGGTCGAGAGCTCG 4858056 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| ||||||| ||||| || || ||||| || || | ||| || Sbjct 4858057 GAC-----ACAATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGG 4858111 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGAT 27963 | |||||| || | || ||||| || ||||| | || |||| |||| |||| ||||| Sbjct 4858112 ACCAGCAAAGGCTCATCTTTGCAGGCAAACAGCTCGAAGACGGCCGCACTCTTG-CCGAT 4858170 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||||||||| || ||| ||| | ||| |||| Sbjct 4858171 TACAACATCCAGAAGGAGTCCACGCTCCATCTGGT 4858205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355830917187093