Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq4576 100 2e-16
seq8 93.3 4e-14
seq11 91.5 1e-13
seq6 82.4 7e-11
seq1 82.4 7e-11
>seq4576
Length=2771
Score = 100 bits (110), Expect = 2e-16
Identities = 149/209 (71%), Gaps = 2/209 (1%)
Strand=Plus/Minus
Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141
|| ||||| |||||| || || || || || ||||| || || | || || |||||
Sbjct 2693 TGGAGCGTCGACTCTTTCTGGATGTTGTAGTCCGCAAGCGTACGGCCATCCTCGAGCTGC 2634
Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201
|||||||| || || || | |||||||||| || | || |||||||||| ||| ||
Sbjct 2633 TTGCCCGCGAAAATGAGCCTTTGCTGGTCGGGAGGGATGCCCTCTTTGTCCTGGATCTTA 2574
Query 39202 TGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260
||||| ||| | | | || ||| || || || | ||||| ||||||| ||
Sbjct 2573 GCTTTGA-CGTTGTCGATGGTGTCGGAGCTTTCGACCTCGAGGGTGATGGTTTTTCCAGT 2515
Query 39261 CAGCGTTTTAACAAAGATTTGCATCTTTA 39289
||||| ||||||||||| ||||||| ||
Sbjct 2514 GAGCGTCTTAACAAAGATCTGCATCTGTA 2486
>seq8
Length=35439739
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141
|| |||||| ||| || || || || || ||||| || ||||| | || || |||||
Sbjct 26900833 TGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCCAGCTGC 26900892
Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201
|| || || || || ||||||||||| || | || | || ||| |||||| ||| | |
Sbjct 26900893 TTTCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCC-TGAATCTT 26900951
Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260
| | ||| | | | ||| || ||| ||||| || | ||||| | || |||||
Sbjct 26900952 GGCCTTCACGTTGTCAATCGTGTCCGACGATTCCACCTCGAGGGTGATCGTCTTCCCCGT 26901011
Query 39261 CAGCGTTTTAACAAAGATTTGCATCTTTACGCC 39293
|||||| || || ||||| |||||||| ||||
Sbjct 26901012 CAGCGTCTTCACGAAGATCTGCATCTTGTCGCC 26901044
Score = 87.8 bits (96), Expect = 2e-12
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||| ||| |||||| ||| || || || || ||||||||||| || || |||| ||
Sbjct 4858206 CACCAGATGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCAAGAGTGCGGCCGTCTTC 4858147
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||||||||| ||||| || || | |||||||| | || | || ||| ||||||
Sbjct 4858146 GAGCTGTTTGCCTGCAAAGATGAGCCTTTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 4858087
Query 39195 GATTTT 39200
||| ||
Sbjct 4858086 GATCTT 4858081
>seq11
Length=25514024
Score = 91.5 bits (100), Expect = 1e-13
Identities = 152/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128
||| | ||||| || || || ||| || || || ||||| ||||| || || || |
Sbjct 15140722 GCGGAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCC 15140781
Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188
||| || ||||| || || || || || || ||||||||||| | || | || ||| ||
Sbjct 15140782 GTCCTCCAGCTGCTTCCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTT 15140841
Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247
|||| ||| ||| || | ||| | | | ||| || ||||||||| || | ||||
Sbjct 15140842 GTCCTGGATCTTCGCCTTCA-CGTTGTCGATCGTGTCCGACGACTCCACCTCAAGGGTGA 15140900
Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| | || ||||||| || || || ||||| |||||
Sbjct 15140901 TCGTCTTCCCCGTCAAAGTCTTCACGAAGATCTGCAT 15140937
>seq6
Length=34899179
Score = 82.4 bits (90), Expect = 7e-11
Identities = 141/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141
|| || ||| ||| ||||| || || || || ||||| || || | || ||||| ||
Sbjct 13144365 TGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGTTGC 13144306
Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201
||||| |||||||| | | |||||||| | ||| | | ||| || ||| ||| ||
Sbjct 13144305 TTGCCAGCAAATATCAACCTTTGCTGGTCCGGGGGTATTCCCTCCTTATCCTGGATCTTG 13144246
Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261
||||| | | | || || || || || || | ||||| | ||||| ||
Sbjct 13144245 GCTTTGACATTGTCAATGGTGTCAGAGGATTCAACCTCAAGGGTGATCGTCTTTCCAGTG 13144186
Query 39262 AGCGTTTTAACAAAGATTTGCATCT 39286
|| ||||| ||||||||||||||||
Sbjct 13144185 AGAGTTTTGACAAAGATTTGCATCT 13144161
>seq1
Length=27573629
Score = 82.4 bits (90), Expect = 7e-11
Identities = 144/207 (70%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141
|| || ||| ||| || || || || || || || || || || |||| || |||||
Sbjct 19376120 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGCCCGTCCTCGAGCTGC 19376179
Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201
|| || |||||||| || ||||||||||| | || | | ||| |||||| ||| |||
Sbjct 19376180 TTCCCGGCAAATATGAGGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTC 19376239
Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260
|||| ||| | | | || || |||||||| || | ||||| | || || ||
Sbjct 19376240 GCCTTGA-CGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCGGT 19376298
Query 39261 CAGCGTTTTAACAAAGATTTGCATCTT 39287
|| || || || ||||| ||||||||
Sbjct 19376299 GAGGGTCTTCACGAAGATCTGCATCTT 19376325
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429507598503467
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