Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq4576 100 2e-16 seq8 93.3 4e-14 seq11 91.5 1e-13 seq6 82.4 7e-11 seq1 82.4 7e-11 >seq4576 Length=2771 Score = 100 bits (110), Expect = 2e-16 Identities = 149/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || ||||| |||||| || || || || || ||||| || || | || || ||||| Sbjct 2693 TGGAGCGTCGACTCTTTCTGGATGTTGTAGTCCGCAAGCGTACGGCCATCCTCGAGCTGC 2634 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 |||||||| || || || | |||||||||| || | || |||||||||| ||| || Sbjct 2633 TTGCCCGCGAAAATGAGCCTTTGCTGGTCGGGAGGGATGCCCTCTTTGTCCTGGATCTTA 2574 Query 39202 TGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 ||||| ||| | | | || ||| || || || | ||||| ||||||| || Sbjct 2573 GCTTTGA-CGTTGTCGATGGTGTCGGAGCTTTCGACCTCGAGGGTGATGGTTTTTCCAGT 2515 Query 39261 CAGCGTTTTAACAAAGATTTGCATCTTTA 39289 ||||| ||||||||||| ||||||| || Sbjct 2514 GAGCGTCTTAACAAAGATCTGCATCTGTA 2486 >seq8 Length=35439739 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || |||||| ||| || || || || || ||||| || ||||| | || || ||||| Sbjct 26900833 TGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCCAGCTGC 26900892 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || || || || ||||||||||| || | || | || ||| |||||| ||| | | Sbjct 26900893 TTTCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCC-TGAATCTT 26900951 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 | | ||| | | | ||| || ||| ||||| || | ||||| | || ||||| Sbjct 26900952 GGCCTTCACGTTGTCAATCGTGTCCGACGATTCCACCTCGAGGGTGATCGTCTTCCCCGT 26901011 Query 39261 CAGCGTTTTAACAAAGATTTGCATCTTTACGCC 39293 |||||| || || ||||| |||||||| |||| Sbjct 26901012 CAGCGTCTTCACGAAGATCTGCATCTTGTCGCC 26901044 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| |||||| ||| || || || || ||||||||||| || || |||| || Sbjct 4858206 CACCAGATGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCAAGAGTGCGGCCGTCTTC 4858147 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||||||||| ||||| || || | |||||||| | || | || ||| |||||| Sbjct 4858146 GAGCTGTTTGCCTGCAAAGATGAGCCTTTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 4858087 Query 39195 GATTTT 39200 ||| || Sbjct 4858086 GATCTT 4858081 >seq11 Length=25514024 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || || ||| || || || ||||| ||||| || || || | Sbjct 15140722 GCGGAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCC 15140781 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| || || || || || || ||||||||||| | || | || ||| || Sbjct 15140782 GTCCTCCAGCTGCTTCCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTT 15140841 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| ||| || | ||| | | | ||| || ||||||||| || | |||| Sbjct 15140842 GTCCTGGATCTTCGCCTTCA-CGTTGTCGATCGTGTCCGACGACTCCACCTCAAGGGTGA 15140900 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | || ||||||| || || || ||||| ||||| Sbjct 15140901 TCGTCTTCCCCGTCAAAGTCTTCACGAAGATCTGCAT 15140937 >seq6 Length=34899179 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| ||||| || || || || ||||| || || | || ||||| || Sbjct 13144365 TGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGTTGC 13144306 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| |||||||| | | |||||||| | ||| | | ||| || ||| ||| || Sbjct 13144305 TTGCCAGCAAATATCAACCTTTGCTGGTCCGGGGGTATTCCCTCCTTATCCTGGATCTTG 13144246 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 ||||| | | | || || || || || || | ||||| | ||||| || Sbjct 13144245 GCTTTGACATTGTCAATGGTGTCAGAGGATTCAACCTCAAGGGTGATCGTCTTTCCAGTG 13144186 Query 39262 AGCGTTTTAACAAAGATTTGCATCT 39286 || ||||| |||||||||||||||| Sbjct 13144185 AGAGTTTTGACAAAGATTTGCATCT 13144161 >seq1 Length=27573629 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || || || || || || |||| || ||||| Sbjct 19376120 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGCCCGTCCTCGAGCTGC 19376179 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || |||||||| || ||||||||||| | || | | ||| |||||| ||| ||| Sbjct 19376180 TTCCCGGCAAATATGAGGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTC 19376239 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| ||| | | | || || |||||||| || | ||||| | || || || Sbjct 19376240 GCCTTGA-CGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCGGT 19376298 Query 39261 CAGCGTTTTAACAAAGATTTGCATCTT 39287 || || || || ||||| |||||||| Sbjct 19376299 GAGGGTCTTCACGAAGATCTGCATCTT 19376325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429507598503467