Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-17 seq8 98.7 7e-16 seq6 98.7 7e-16 seq5 93.3 3e-14 >seq1 Length=27573629 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || |||||||| || || |||||||| ||||| || || || Sbjct 19376325 AAGATGCAGATCTTCGTGAAGACCCTCACCGGGAAGACGATCACCCTCGAGGTGGAGTCT 19376266 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||||||| | || | | || || || ||||| || || | ||||| || Sbjct 19376265 TCGGACACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGGATCCCGCCGGAC 19376206 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| | ||||||||||| || || || || |||| ||||| | | || ||| Sbjct 19376205 CAGCAGCGCCTCATATTTGCCGGGAAGCAGCTCGAGGACGGGCGCACCCTCGCAGACTAC 19376146 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || |||||||| Sbjct 19376145 AACATCCAGAAGGAGTCCAC 19376126 >seq8 Length=35439739 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||||||||| || || || ||||| || || ||||| ||| | Sbjct 1223457 ATGCAGATCTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTAGAGGTTGAATCCTCC 1223398 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| |||| | || || ||||| || || | || || || || Sbjct 1223397 GACACCATCGACAATGTTAAGGC-CAAGATCCAAGACAAGGAGGGGATCCCCCCCGACCA 1223339 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || || || || || || ||||||| ||||| || | ||| || || Sbjct 1223338 GCAGAGGCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGCACCTTGGCCGACTATAA 1223279 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 1223278 CATTCAGAAGGAGTCCAC 1223261 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || ||||| || || || || || | || || || | || Sbjct 4857997 ATGCAGATCTTCGTGAAGACTCTCACTGGGAAGACCATTACCTTGGAGGTCGAGAGCTCG 4858056 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | ||||| || || Sbjct 4858057 GACACAATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 4858116 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || ||||| |||||||| || ||||||| |||||| | | |||||||||| Sbjct 4858117 CAAAGGCTCATCTTTGCAGGCAAACAGCTCGAAGACGGCCGCACTCTTGCCGATTACAAC 4858176 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 4858177 ATCCAGAAGGAGTCCAC 4858193 >seq6 Length=34899179 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || |||||||||||||| || || |||||||| || ||||| | || Sbjct 13154544 ATGCAAATTTTTGTGAAAACCCTCACGGGGAAGACCATCACTCTGGAGGTTGAGAGCTCG 13154603 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || ||| | || | ||| || ||||| || || | || ||||| || Sbjct 13154604 GACACTATCGACAATGTGAAGGC-AAAGATACAGGACAAGGAGGGAATCCCACCAGACCA 13154662 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | |||| ||||| || || || || || || | ||||| | | || || || Sbjct 13154663 ACAGAGGCTAATCTTTGCGGGTAAGCAGCTCGAGGATGGGCGCACACTGGCAGACTATAA 13154722 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 13154723 CATCCAGAAGGAATCCAC 13154740 >seq5 Length=29377369 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || ||||||||||| ||||| || ||||| || || || || | | Sbjct 457756 ATGCAAATTTTTGTCAAAACCCTCACCGGAAACACCATCACCCTGGAGGTGGAGAGCTCA 457815 Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | | ||| ||||| | ||| || |||||| || || | | || ||||| Sbjct 457816 GACACGATCGCCAATCTTAAAGC-AAAGATCCATGACAAGGAGGGCATCTCACCGGATCA 457874 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||| ||||| || || || | |||||| | | ||| |||| Sbjct 457875 GCAGAGGCTCATCTTTGCCGGGAAACAGCTCGAGGATGGCCGCACTCTGGACGACTACAG 457934 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 457935 CATTCAGAAGGAATCCAC 457952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337979696607572