Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq6 100 4e-16 seq11 95.1 2e-14 >seq6 Length=34899179 Score = 100 bits (110), Expect = 4e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 ||||||||||| |||||| |||| | | ||| || |||||| ||||| | ||||||| Sbjct 13939967 TCAAATTCATCACCCCAACAATCAGCAAGTCCCGGAGCTTCATTAGGGCAAAACAATGAC 13940026 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044 || | |||| || ||||| || ||||||||||||||| ||||| || ||| ||| Sbjct 13940027 CATTGTCCATTACTCTGAACTCTTTCCATAAAGAGATCAGGAATCCAAAGGGCATAAAAC 13940086 Query 78045 AGATCTCGGGTTCTATGTTCTTC 78067 || || | | |||||| ||||| Sbjct 13940087 AGGTCCCTAGCTCTATGCTCTTC 13940109 Score = 98.7 bits (108), Expect = 1e-15 Identities = 157/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||| | || || | ||| | || || | |||||||| |||||| Sbjct 13941176 CCTCCTTGATCAACATAACGAGCAGTATCATTGAACACCCTTAGCATTGGAACAATACCA 13941235 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 ||||||||||||||||| ||| |||||||| || |||| || || || || || Sbjct 13941236 TTAGATGTTCCATTTGTCCCACGGATATAACTGCCTGTTGCTCGGATGTTGTGAACAGAA 13941295 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || ||| ||||| ||| || || | ||||| || || Sbjct 13941296 ACACCAATTCCTCCAGCTGACTTGCTTATTATAGCACACTCCTTAAGCGTATCATATATC 13941355 Query 78339 CCCTCTATACTGTCATCCATCATG-TTAAGAAGAAAACAGCTA 78380 ||||| || || || || ||||| || ||| ||||||||| Sbjct 13941356 CCCTCAATGCTATCTTCTTTCATGCATATCAAG-AAACAGCTA 13941397 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || ||||||||||| || || ||||| ||||| || ||||| || ||| | |||| | Sbjct 13941503 GTGCCTGCATTAAACAAGGTGGGAGAAGCATGAGTGAACCACCGTTGAGACATCAGATGG 13941562 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || ||| ||| | || | ||||| || || ||||| || ||||| | ||||| | Sbjct 13941563 TAAGTTCTGATAACAGACTTGATGTCATCTTTGTGGATTCCAACAGCTACTCTCATCAGC 13941622 Query 78519 ATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 78578 || || || || || ||||| | | | || |||||| | ||||| | |||| | Sbjct 13941623 ATGTGTTGTGGCCTCTCAACTACCATGCCAGATACTTTCAAGAGATATGACCTCTCCAGA 13941682 Query 78579 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 |||||||| ||||| |||| || ||| |||| || ||||| || Sbjct 13941683 GTTTTAAATCCAAAGTAGTCATAGTCAAAATCTCGATCATAAATTAT 13941729 >seq11 Length=25514024 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 |||||| ||||| | ||| | || || | ||| | || || | ||| |||| |||||| Sbjct 20144382 ACCTCCTTGATCAACATAACGAGCAGTATCATTGAACACCCTTAGCATGGGAACAATACC 20144323 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || |||||||||||||| ||| ||||||||||| |||| || || || || || Sbjct 20144322 ATTGGATGTTCCATTTGTACCACGGATATAACTTCCTGTTGCACGGATGTTGTGAACAGA 20144263 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || |||||||| || ||| ||||| ||| || |||| ||||| || || Sbjct 20144262 AACGCCAATTCCTCCAGCTGACTTGCTTATTATAGCACACTCCTTCAGAGTATCATATAT 20144203 Query 78338 ACCCTCTATACTGTCATCCATCATG 78362 ||||| || || || || ||||| Sbjct 20144202 TCCCTCAATGCTATCTTCTTTCATG 20144178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694605767489760