Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq6 100 4e-16
seq11 95.1 2e-14
>seq6
Length=34899179
Score = 100 bits (110), Expect = 4e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984
||||||||||| |||||| |||| | | ||| || |||||| ||||| | |||||||
Sbjct 13939967 TCAAATTCATCACCCCAACAATCAGCAAGTCCCGGAGCTTCATTAGGGCAAAACAATGAC 13940026
Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044
|| | |||| || ||||| || ||||||||||||||| ||||| || ||| |||
Sbjct 13940027 CATTGTCCATTACTCTGAACTCTTTCCATAAAGAGATCAGGAATCCAAAGGGCATAAAAC 13940086
Query 78045 AGATCTCGGGTTCTATGTTCTTC 78067
|| || | | |||||| |||||
Sbjct 13940087 AGGTCCCTAGCTCTATGCTCTTC 13940109
Score = 98.7 bits (108), Expect = 1e-15
Identities = 157/223 (70%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218
||||| ||||| | ||| | || || | ||| | || || | |||||||| ||||||
Sbjct 13941176 CCTCCTTGATCAACATAACGAGCAGTATCATTGAACACCCTTAGCATTGGAACAATACCA 13941235
Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278
||||||||||||||||| ||| |||||||| || |||| || || || || ||
Sbjct 13941236 TTAGATGTTCCATTTGTCCCACGGATATAACTGCCTGTTGCTCGGATGTTGTGAACAGAA 13941295
Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338
| || |||||||| || ||| ||||| ||| || || | ||||| || ||
Sbjct 13941296 ACACCAATTCCTCCAGCTGACTTGCTTATTATAGCACACTCCTTAAGCGTATCATATATC 13941355
Query 78339 CCCTCTATACTGTCATCCATCATG-TTAAGAAGAAAACAGCTA 78380
||||| || || || || ||||| || ||| |||||||||
Sbjct 13941356 CCCTCAATGCTATCTTCTTTCATGCATATCAAG-AAACAGCTA 13941397
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458
|| ||||||||||| || || ||||| ||||| || ||||| || ||| | |||| |
Sbjct 13941503 GTGCCTGCATTAAACAAGGTGGGAGAAGCATGAGTGAACCACCGTTGAGACATCAGATGG 13941562
Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518
|| ||| ||| | || | ||||| || || ||||| || ||||| | ||||| |
Sbjct 13941563 TAAGTTCTGATAACAGACTTGATGTCATCTTTGTGGATTCCAACAGCTACTCTCATCAGC 13941622
Query 78519 ATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 78578
|| || || || || ||||| | | | || |||||| | ||||| | |||| |
Sbjct 13941623 ATGTGTTGTGGCCTCTCAACTACCATGCCAGATACTTTCAAGAGATATGACCTCTCCAGA 13941682
Query 78579 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625
|||||||| ||||| |||| || ||| |||| || ||||| ||
Sbjct 13941683 GTTTTAAATCCAAAGTAGTCATAGTCAAAATCTCGATCATAAATTAT 13941729
>seq11
Length=25514024
Score = 95.1 bits (104), Expect = 2e-14
Identities = 144/205 (70%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217
|||||| ||||| | ||| | || || | ||| | || || | ||| |||| ||||||
Sbjct 20144382 ACCTCCTTGATCAACATAACGAGCAGTATCATTGAACACCCTTAGCATGGGAACAATACC 20144323
Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277
|| |||||||||||||| ||| ||||||||||| |||| || || || || ||
Sbjct 20144322 ATTGGATGTTCCATTTGTACCACGGATATAACTTCCTGTTGCACGGATGTTGTGAACAGA 20144263
Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337
| || |||||||| || ||| ||||| ||| || |||| ||||| || ||
Sbjct 20144262 AACGCCAATTCCTCCAGCTGACTTGCTTATTATAGCACACTCCTTCAGAGTATCATATAT 20144203
Query 78338 ACCCTCTATACTGTCATCCATCATG 78362
||||| || || || || |||||
Sbjct 20144202 TCCCTCAATGCTATCTTCTTTCATG 20144178
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694605767489760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |