Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq11 100 4e-16
seq9 100 4e-16
seq6 98.7 1e-15
>seq11
Length=25514024
Score = 100 bits (110), Expect = 4e-16
Identities = 145/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812
|||||| ||||| | ||| | ||||| | ||| | || || | ||| |||| ||| ||
Sbjct 20144382 ACCTCCTTGATCAACATAACGAGCAGTATCATTGAACACCCTTAGCATGGGAACAATACC 20144323
Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872
|| ||||| |||||||| ||| ||||||||||| |||||| || || || |||
Sbjct 20144322 ATTGGATGTTCCATTTGTACCACGGATATAACTTCCTGTTGCACGGATGTTGTGAACAGA 20144263
Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932
| ||| |||||||| || || |||| |||||| |||| || ||||| ||
Sbjct 20144262 AACGCCAATTCCTCCAGCTGACTTGCTTATTATAGCACACTCCTTCAGAGTATCATATAT 20144203
Query 76933 GCCCTCTATACTATCATCCATCATG 76957
||||| || ||||| || |||||
Sbjct 20144202 TCCCTCAATGCTATCTTCTTTCATG 20144178
Score = 95.1 bits (104), Expect = 2e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053
|| |||||||| ||||| || || || |||||||||||||| | ||| | |||| |
Sbjct 20144052 GTGCCTGCATTGAACAAGGTGGGTGAAGCATGAGTGAACCACCGCTGAGACAACAGATGG 20143993
Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113
|||||| |||| || | || || || || || ||||| ||||| || | |||||||
Sbjct 20143992 TATGTTCCAATGACAGAGTCAATGTCATCTTTGTGGATTCCAACAGCTACTCTCATCAAC 20143933
Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173
|| || || || | || || ||| | | ||| || | || || | || | |
Sbjct 20143932 ATGTGTTGTGGCCTCTCCACTACCTTGCCACAAACTTTTAAGAGATACGACCTCTCAAGA 20143873
Query 77174 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220
|||||||| |||||||| | || |||||||| || ||||| ||
Sbjct 20143872 GTTTTAAATCCAAAATAATCATAGTCAAAGTCTCGATCATAAATTAT 20143826
>seq9
Length=34148863
Score = 100 bits (110), Expect = 4e-16
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689
|| || || || ||||||||||| || || | || | ||||| || || ||||||
Sbjct 1096992 CAGGCGAAGTCGCAATGAAGGCCCTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAGC 1096933
Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749
|| ||||| || || ||||| ||||||||||| ||||| ||| || ||||| |||||
Sbjct 1096932 CCCGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATAGCGCAGAAGGAGCCAGAGAAGAAG 1096873
Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTC 46784
|| || || ||| ||||| ||||||| || |||
Sbjct 1096872 ATTCCCTCGACACAGGCGAAGGCGACAATTCGCTC 1096838
>seq6
Length=34899179
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053
|| |||||||||||||| || ||||| |||||||||||||| || ||| | |||| |
Sbjct 13941503 GTGCCTGCATTAAACAAGGTGGGAGAAGCATGAGTGAACCACCGTTGAGACATCAGATGG 13941562
Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113
|| ||| ||||| | | || || || || ||||| ||||| || | ||||| |
Sbjct 13941563 TAAGTTCTGATAACAGACTTGATGTCATCTTTGTGGATTCCAACAGCTACTCTCATCAGC 13941622
Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173
|| || || || | || || | | | || |||||| | ||||| | |||| |
Sbjct 13941623 ATGTGTTGTGGCCTCTCAACTACCATGCCAGATACTTTCAAGAGATATGACCTCTCCAGA 13941682
Query 77174 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220
|||||||| ||||| |||| || ||| |||| || ||||| ||
Sbjct 13941683 GTTTTAAATCCAAAGTAGTCATAGTCAAAATCTCGATCATAAATTAT 13941729
Score = 87.8 bits (96), Expect = 3e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579
||||||||||| |||||| |||| | | || ||| |||||| || || | |||||||
Sbjct 13939967 TCAAATTCATCACCCCAACAATCAGCAAGTCCCGGAGCTTCATTAGGGCAAAACAATGAC 13940026
Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639
|| | |||| || ||| | || ||||||||||||||| ||||| || ||| |||
Sbjct 13940027 CATTGTCCATTACTCTGAACTCTTTCCATAAAGAGATCAGGAATCCAAAGGGCATAAAAC 13940086
Query 76640 AGATCTCGGGTTCTACGTTCTTC 76662
|| || | | |||| | |||||
Sbjct 13940087 AGGTCCCTAGCTCTATGCTCTTC 13940109
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712869710114880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |