Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq11 100 4e-16 seq9 100 4e-16 seq6 98.7 1e-15 >seq11 Length=25514024 Score = 100 bits (110), Expect = 4e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||| ||||| | ||| | ||||| | ||| | || || | ||| |||| ||| || Sbjct 20144382 ACCTCCTTGATCAACATAACGAGCAGTATCATTGAACACCCTTAGCATGGGAACAATACC 20144323 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| |||||||| ||| ||||||||||| |||||| || || || ||| Sbjct 20144322 ATTGGATGTTCCATTTGTACCACGGATATAACTTCCTGTTGCACGGATGTTGTGAACAGA 20144263 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | ||| |||||||| || || |||| |||||| |||| || ||||| || Sbjct 20144262 AACGCCAATTCCTCCAGCTGACTTGCTTATTATAGCACACTCCTTCAGAGTATCATATAT 20144203 Query 76933 GCCCTCTATACTATCATCCATCATG 76957 ||||| || ||||| || ||||| Sbjct 20144202 TCCCTCAATGCTATCTTCTTTCATG 20144178 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || |||||||| ||||| || || || |||||||||||||| | ||| | |||| | Sbjct 20144052 GTGCCTGCATTGAACAAGGTGGGTGAAGCATGAGTGAACCACCGCTGAGACAACAGATGG 20143993 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 |||||| |||| || | || || || || || ||||| ||||| || | ||||||| Sbjct 20143992 TATGTTCCAATGACAGAGTCAATGTCATCTTTGTGGATTCCAACAGCTACTCTCATCAAC 20143933 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 || || || || | || || ||| | | ||| || | || || | || | | Sbjct 20143932 ATGTGTTGTGGCCTCTCCACTACCTTGCCACAAACTTTTAAGAGATACGACCTCTCAAGA 20143873 Query 77174 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 |||||||| |||||||| | || |||||||| || ||||| || Sbjct 20143872 GTTTTAAATCCAAAATAATCATAGTCAAAGTCTCGATCATAAATTAT 20143826 >seq9 Length=34148863 Score = 100 bits (110), Expect = 4e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || || || || ||||||||||| || || | || | ||||| || || |||||| Sbjct 1096992 CAGGCGAAGTCGCAATGAAGGCCCTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAGC 1096933 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 || ||||| || || ||||| ||||||||||| ||||| ||| || ||||| ||||| Sbjct 1096932 CCCGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATAGCGCAGAAGGAGCCAGAGAAGAAG 1096873 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTC 46784 || || || ||| ||||| ||||||| || ||| Sbjct 1096872 ATTCCCTCGACACAGGCGAAGGCGACAATTCGCTC 1096838 >seq6 Length=34899179 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || |||||||||||||| || ||||| |||||||||||||| || ||| | |||| | Sbjct 13941503 GTGCCTGCATTAAACAAGGTGGGAGAAGCATGAGTGAACCACCGTTGAGACATCAGATGG 13941562 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || ||| ||||| | | || || || || ||||| ||||| || | ||||| | Sbjct 13941563 TAAGTTCTGATAACAGACTTGATGTCATCTTTGTGGATTCCAACAGCTACTCTCATCAGC 13941622 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 || || || || | || || | | | || |||||| | ||||| | |||| | Sbjct 13941623 ATGTGTTGTGGCCTCTCAACTACCATGCCAGATACTTTCAAGAGATATGACCTCTCCAGA 13941682 Query 77174 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 |||||||| ||||| |||| || ||| |||| || ||||| || Sbjct 13941683 GTTTTAAATCCAAAGTAGTCATAGTCAAAATCTCGATCATAAATTAT 13941729 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 ||||||||||| |||||| |||| | | || ||| |||||| || || | ||||||| Sbjct 13939967 TCAAATTCATCACCCCAACAATCAGCAAGTCCCGGAGCTTCATTAGGGCAAAACAATGAC 13940026 Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639 || | |||| || ||| | || ||||||||||||||| ||||| || ||| ||| Sbjct 13940027 CATTGTCCATTACTCTGAACTCTTTCCATAAAGAGATCAGGAATCCAAAGGGCATAAAAC 13940086 Query 76640 AGATCTCGGGTTCTACGTTCTTC 76662 || || | | |||| | ||||| Sbjct 13940087 AGGTCCCTAGCTCTATGCTCTTC 13940109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712869710114880