Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_031235.1
Length=194437
Score E
Sequences producing significant alignments: (Bits) Value
seq1382 167 3e-36
seq9 132 6e-26
seq4 122 1e-22
seq1063 120 4e-22
seq10 107 2e-18
seq1035 96.9 4e-15
seq1024 93.3 5e-14
seq11 87.8 2e-12
>seq1382
Length=172696
Score = 167 bits (184), Expect = 3e-36
Identities = 248/343 (72%), Gaps = 19/343 (6%)
Strand=Plus/Plus
Query 183715 CACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCT--GGTGTCTTCGGTGGTT 183772
||||||||||| ||||| || || ||||| | ||| | ||| ||||| ||||| || |
Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556
Query 183773 CTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACT 183831
| || |||||||| ||||| ||||| |||| || || | | | | || | |||||||||
Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACT 123615
Query 183832 GAGTCTGAGTCA-CAGAACTATGGTTACAAGTTCGGTCAAGAAGAAG----AGACCTACA 183886
|| || || || | | ||||||| |||||||||||||||| |||| ||||
Sbjct 123616 GAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACA 123674
Query 183887 ACA-----TTGTCGCTGCTCATGGATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGTT 183941
| | |||| ||||||||||| || || | || ||||| |||| |||||| ||
Sbjct 123675 ATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTT 123734
Query 183942 TAACAATTCTCGTTC--TCTTCACTTC--TTCCTTGCTGCTTGGCCAGTGGTCGGCATCT 183997
||||| ||||| | |||| || | ||| | || ||||||||||| | || ||||
Sbjct 123735 CAACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCT 123794
Query 183998 GGTTTACTGCTCTTGGTGTTAGCACTATGGCATTTAACCTGAA 184040
|| | || ||| | ||| ||||||| ||||| || ||||| ||
Sbjct 123795 GGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837
>seq9
Length=34148863
Score = 132 bits (146), Expect = 6e-26
Identities = 179/247 (72%), Gaps = 2/247 (1%)
Strand=Plus/Plus
Query 183520 TGCTACATGGGTCGTGAGTGGGAATTGTCTTACCGTCTCGGTATGCGTCCTTGGATCTGT 183579
|| ||||| | || ||||| ||| | || | ||| ||||||||||||||||| |
Sbjct 1506914 TGTTACATTGATCATGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGATTGCT 1506973
Query 183580 GTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGCTGTCTTCCTGGTCTATCCTTTCGGT 183639
||||| ||| || |||||||| ||||| || ||||| ||| || |||| ||| | |||
Sbjct 1506974 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGT 1507033
Query 183640 CAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATG-CT 183698
||||| ||| |||||||||||| | || || | ||| || |||| ||| |
Sbjct 1507034 CAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTAT 1507092
Query 183699 TGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGG 183758
||| || | ||||| ||||||||||| ||||| | | |||||| | ||||| ||||
Sbjct 1507093 TGTATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGG 1507152
Query 183759 TGTCTTC 183765
||| |||
Sbjct 1507153 TGTATTC 1507159
>seq4
Length=30051516
Score = 122 bits (134), Expect = 1e-22
Identities = 129/169 (76%), Gaps = 6/169 (4%)
Strand=Plus/Plus
Query 184011 TGGTGTTAGCACTATGGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGA 184070
|||| ||||||| ||||| || ||||| |||||||| || |||||||| ||| | ||||
Sbjct 1282761 TGGTATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGA 1282820
Query 184071 TGGTCAAGGTCGTGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCAT 184130
|||| ||||||||| | || || ||| || | |||| |||||| |||||| ||
Sbjct 1282821 CAGTCAGGGTCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTAT 1282878
Query 184131 GGA----AGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCT 184175
||| ||| || || || ||||||||||| ||||||||| | |||||
Sbjct 1282879 GGATGGAAGTAATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927
>seq1063
Length=431445
Score = 120 bits (132), Expect = 4e-22
Identities = 236/341 (69%), Gaps = 25/341 (7%)
Strand=Plus/Minus
Query 183655 GATGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAG 183714
||||||||||| | || || ||| || || ||| ||| |||| || | |||||
Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166
Query 183715 CACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCT--GGTGTCTTCGGTGGTT 183772
||||||||||| ||||| | || |||||| | ||||| ||| ||||| |||||
Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 54111
Query 183773 CTCTGTTCAGTGCAATGCACGGTTCTCTGGTT-ACTTCCTCGCTGGTTC-GTGAAACCAC 183830
| || ||| | ||||| ||||| |||| ||| || | | || | |||| |||
Sbjct 54110 CCCT----AGTACTATGCATGGTTCCTTGGTCCACT--CTTGTTTCATCAGGGAAATCAC 54057
Query 183831 TGAGTCTGAGTCACAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCT-ACAA 183887
||| || || | | | | || || |||||| |||| |||||||| | ||||
Sbjct 54056 TGAAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAA 53999
Query 183888 CA-----TTGTCGCTGCTCATGGATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGTTT 183942
| |||| ||||||||||| || || | || |||||||||| |||||| ||
Sbjct 53998 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTC 53939
Query 183943 AACAATTCTCGTTCTCTTCACTTCTTCCTTGCTGCTTGGCC 183983
||||| ||||||||| | || |||||| | ||||| |||||
Sbjct 53938 AACAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCC 53898
>seq10
Length=33665772
Score = 107 bits (118), Expect = 2e-18
Identities = 230/339 (68%), Gaps = 21/339 (6%)
Strand=Plus/Plus
Query 183655 GATGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAG 183714
||||||||||| | || || ||| || || |||| ||| |||| ||||| |||||
Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954
Query 183715 CACAACATCCTGATGCACCCCTTCCACATGCTGGGTGT--CGCTGGTGTCTTCGGTGGTT 183772
||||||||||| ||||| | || |||||| | ||||| | ||||||| |||||
Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 4333009
Query 183773 CTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTG 183832
| || ||| | ||||| ||||| |||| | || | | | | |||| |||||
Sbjct 4333010 CCCT----AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065
Query 183833 AGTCTGAGTCACAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGAC-CTACAA-- 183887
| || || | | | | || || |||||| |||| |||||||| |||||
Sbjct 4333066 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 4333123
Query 183888 ---CATTGTCGCTGCTCATGGATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGTTTAA 183944
|||||| | ||||||||| || || | || ||| || ||| |||||| || ||
Sbjct 4333124 GAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAA 4333183
Query 183945 CAATTCTCGTTCTCTTCACTTCTTCCTTGCTGCTTGGCC 183983
||| || |||| || |||||| | ||||| |||||
Sbjct 4333184 CAACTCGACTTCTTGACATTTCTTCTTGGCTGCGTGGCC 4333222
>seq1035
Length=594915
Score = 96.9 bits (106), Expect = 4e-15
Identities = 265/398 (67%), Gaps = 36/398 (9%)
Strand=Plus/Plus
Query 186435 TTTGGAGTCGCAGCAATCTTTAGAT---TCCTGTTGTTCCTCCAAGGATTCCACAACTGG 186491
||||| || ||||| || ||| ||| |||| | |||| || | | | || |||
Sbjct 236996 TTTGGTGTAGCAGCTATATTTCGATGAATCCTCTGATTCC---AACGGTGGAATAATTGG 237052
Query 186492 ACGTTGAATCCATTCCACATGATGGGTGT--AGCAGGTATCCTTGGTGGTGCTCTGCTGT 186549
|||||||| || || | |||||||| || || || ||| | || | ||||||||| |
Sbjct 237053 ACGTTGAACCCTTTGAATATGATGGGAGTTTAGGAG-TAT--TAGGCGCTGCTCTGCTAT 237109
Query 186550 CAGCAATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACA 186609
|| || |||||| ||||| |||| ||| | | |||||||| | ||||| |
Sbjct 237110 GCGCTATTCATGGT----CTGTATAAAACACTTTATTCGAAGATGGTAACGGTGCAAATA 237165
Query 186610 CATTCAAA----GCATTCGATACGACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCG 186665
||| | || || | | || |||| ||||| || ||||| |||||||||||
Sbjct 237166 CATACTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCT 237225
Query 186666 AACAGATTCTGGTCACAGATC-----TTCGGAATTGCGTTTAGCAATAAGCGTTGGCTTC 186720
||| | || ||||| || ||| || || |||| ||| |||||| |||||||
Sbjct 237226 AACCGTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGGC--- 237282
Query 186721 ATTTCTTCATGCTCTTTGTTCCTGTTATGGGTCTTTGGACCTCTTCCATT--GGCATTA- 186777
||| ||| | ||||| | || | ||| | |||| | | ||| || | ||
Sbjct 237283 ----CTT-ATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGGTAGTAA 237337
Query 186778 -TTGGTCTTGCTCTTAACCTTCGTGCTTATGACTTTGT 186814
| ||||| ||||| || || ||||| |||||||| ||
Sbjct 237338 GTCGGTCTGGCTCTGAATCTACGTGCCTATGACTTCGT 237375
>seq1024
Length=717246
Score = 93.3 bits (102), Expect = 5e-14
Identities = 72/86 (84%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 184090 AACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGT 184149
||||| ||||| || | ||||||||||| ||||| |||||||| ||||| || |||
Sbjct 156788 AACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGT 156847
Query 184150 AATGCTCACAACTTCCCTCTCGACCT 184175
|||||||||||||||||||| |||||
Sbjct 156848 AATGCTCACAACTTCCCTCTAGACCT 156873
>seq11
Length=25514024
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/196 (70%), Gaps = 4/196 (2%)
Strand=Plus/Minus
Query 171000 TATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGGT 171059
|| ||||| || | ||||| |||||| | || || || || || ||||| |||
Sbjct 15749124 TACATTCTGGACTCAGCTGAGACGGCAGGAGTGGAGCTGCCGTACTCATGCCGTGCCGGT 15749065
Query 171060 GCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATCT 171119
|| ||||| | |||||| || | || | | |||| |||||||||| || ||| |||
Sbjct 15749064 GCGTGTTCCAGCTGTGCAGGCCAGATGGTGTCTGGTGCTGTTGATCAGTCAGATGGATCC 15749005
Query 171120 TTCCTTGATGATGATCAGATTGAATCAGGTTTCATTCTGACCTGCGTCTCATATCCTACA 171179
|||||||||||| |||||| | |||| ||| ||||| || || | ||||| ||
Sbjct 15749004 TTCCTTGATGATTCACAGATTTCAAAGGGTTACATGCTGACTTGTGTTGCCTATCC--CA 15748947
Query 171180 AGT--GATTGTGTAAT 171193
|| |||||||| ||
Sbjct 15748946 TGTCAGATTGTGTCAT 15748931
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622013954887080
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