Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq1382 167 3e-36 seq9 132 6e-26 seq4 122 1e-22 seq1063 120 4e-22 seq10 107 2e-18 seq1035 96.9 4e-15 seq1024 93.3 5e-14 seq11 87.8 2e-12 >seq1382 Length=172696 Score = 167 bits (184), Expect = 3e-36 Identities = 248/343 (72%), Gaps = 19/343 (6%) Strand=Plus/Plus Query 183715 CACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCT--GGTGTCTTCGGTGGTT 183772 ||||||||||| ||||| || || ||||| | ||| | ||| ||||| ||||| || | Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556 Query 183773 CTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACT 183831 | || |||||||| ||||| ||||| |||| || || | | | | || | ||||||||| Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACT 123615 Query 183832 GAGTCTGAGTCA-CAGAACTATGGTTACAAGTTCGGTCAAGAAGAAG----AGACCTACA 183886 || || || || | | ||||||| |||||||||||||||| |||| |||| Sbjct 123616 GAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACA 123674 Query 183887 ACA-----TTGTCGCTGCTCATGGATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGTT 183941 | | |||| ||||||||||| || || | || ||||| |||| |||||| || Sbjct 123675 ATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTT 123734 Query 183942 TAACAATTCTCGTTC--TCTTCACTTC--TTCCTTGCTGCTTGGCCAGTGGTCGGCATCT 183997 ||||| ||||| | |||| || | ||| | || ||||||||||| | || |||| Sbjct 123735 CAACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCT 123794 Query 183998 GGTTTACTGCTCTTGGTGTTAGCACTATGGCATTTAACCTGAA 184040 || | || ||| | ||| ||||||| ||||| || ||||| || Sbjct 123795 GGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 >seq9 Length=34148863 Score = 132 bits (146), Expect = 6e-26 Identities = 179/247 (72%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 183520 TGCTACATGGGTCGTGAGTGGGAATTGTCTTACCGTCTCGGTATGCGTCCTTGGATCTGT 183579 || ||||| | || ||||| ||| | || | ||| ||||||||||||||||| | Sbjct 1506914 TGTTACATTGATCATGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGATTGCT 1506973 Query 183580 GTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGCTGTCTTCCTGGTCTATCCTTTCGGT 183639 ||||| ||| || |||||||| ||||| || ||||| ||| || |||| ||| | ||| Sbjct 1506974 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGT 1507033 Query 183640 CAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATG-CT 183698 ||||| ||| |||||||||||| | || || | ||| || |||| ||| | Sbjct 1507034 CAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTAT 1507092 Query 183699 TGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGG 183758 ||| || | ||||| ||||||||||| ||||| | | |||||| | ||||| |||| Sbjct 1507093 TGTATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGG 1507152 Query 183759 TGTCTTC 183765 ||| ||| Sbjct 1507153 TGTATTC 1507159 >seq4 Length=30051516 Score = 122 bits (134), Expect = 1e-22 Identities = 129/169 (76%), Gaps = 6/169 (4%) Strand=Plus/Plus Query 184011 TGGTGTTAGCACTATGGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGA 184070 |||| ||||||| ||||| || ||||| |||||||| || |||||||| ||| | |||| Sbjct 1282761 TGGTATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGA 1282820 Query 184071 TGGTCAAGGTCGTGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCAT 184130 |||| ||||||||| | || || ||| || | |||| |||||| |||||| || Sbjct 1282821 CAGTCAGGGTCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTAT 1282878 Query 184131 GGA----AGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCT 184175 ||| ||| || || || ||||||||||| ||||||||| | ||||| Sbjct 1282879 GGATGGAAGTAATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927 >seq1063 Length=431445 Score = 120 bits (132), Expect = 4e-22 Identities = 236/341 (69%), Gaps = 25/341 (7%) Strand=Plus/Minus Query 183655 GATGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAG 183714 ||||||||||| | || || ||| || || ||| ||| |||| || | ||||| Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166 Query 183715 CACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCT--GGTGTCTTCGGTGGTT 183772 ||||||||||| ||||| | || |||||| | ||||| ||| ||||| ||||| Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 54111 Query 183773 CTCTGTTCAGTGCAATGCACGGTTCTCTGGTT-ACTTCCTCGCTGGTTC-GTGAAACCAC 183830 | || ||| | ||||| ||||| |||| ||| || | | || | |||| ||| Sbjct 54110 CCCT----AGTACTATGCATGGTTCCTTGGTCCACT--CTTGTTTCATCAGGGAAATCAC 54057 Query 183831 TGAGTCTGAGTCACAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCT-ACAA 183887 ||| || || | | | | || || |||||| |||| |||||||| | |||| Sbjct 54056 TGAAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAA 53999 Query 183888 CA-----TTGTCGCTGCTCATGGATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGTTT 183942 | |||| ||||||||||| || || | || |||||||||| |||||| || Sbjct 53998 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTC 53939 Query 183943 AACAATTCTCGTTCTCTTCACTTCTTCCTTGCTGCTTGGCC 183983 ||||| ||||||||| | || |||||| | ||||| ||||| Sbjct 53938 AACAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCC 53898 >seq10 Length=33665772 Score = 107 bits (118), Expect = 2e-18 Identities = 230/339 (68%), Gaps = 21/339 (6%) Strand=Plus/Plus Query 183655 GATGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAG 183714 ||||||||||| | || || ||| || || |||| ||| |||| ||||| ||||| Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954 Query 183715 CACAACATCCTGATGCACCCCTTCCACATGCTGGGTGT--CGCTGGTGTCTTCGGTGGTT 183772 ||||||||||| ||||| | || |||||| | ||||| | ||||||| ||||| Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 4333009 Query 183773 CTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTG 183832 | || ||| | ||||| ||||| |||| | || | | | | |||| ||||| Sbjct 4333010 CCCT----AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065 Query 183833 AGTCTGAGTCACAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGAC-CTACAA-- 183887 | || || | | | | || || |||||| |||| |||||||| ||||| Sbjct 4333066 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 4333123 Query 183888 ---CATTGTCGCTGCTCATGGATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGTTTAA 183944 |||||| | ||||||||| || || | || ||| || ||| |||||| || || Sbjct 4333124 GAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAA 4333183 Query 183945 CAATTCTCGTTCTCTTCACTTCTTCCTTGCTGCTTGGCC 183983 ||| || |||| || |||||| | ||||| ||||| Sbjct 4333184 CAACTCGACTTCTTGACATTTCTTCTTGGCTGCGTGGCC 4333222 >seq1035 Length=594915 Score = 96.9 bits (106), Expect = 4e-15 Identities = 265/398 (67%), Gaps = 36/398 (9%) Strand=Plus/Plus Query 186435 TTTGGAGTCGCAGCAATCTTTAGAT---TCCTGTTGTTCCTCCAAGGATTCCACAACTGG 186491 ||||| || ||||| || ||| ||| |||| | |||| || | | | || ||| Sbjct 236996 TTTGGTGTAGCAGCTATATTTCGATGAATCCTCTGATTCC---AACGGTGGAATAATTGG 237052 Query 186492 ACGTTGAATCCATTCCACATGATGGGTGT--AGCAGGTATCCTTGGTGGTGCTCTGCTGT 186549 |||||||| || || | |||||||| || || || ||| | || | ||||||||| | Sbjct 237053 ACGTTGAACCCTTTGAATATGATGGGAGTTTAGGAG-TAT--TAGGCGCTGCTCTGCTAT 237109 Query 186550 CAGCAATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACA 186609 || || |||||| ||||| |||| ||| | | |||||||| | ||||| | Sbjct 237110 GCGCTATTCATGGT----CTGTATAAAACACTTTATTCGAAGATGGTAACGGTGCAAATA 237165 Query 186610 CATTCAAA----GCATTCGATACGACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCG 186665 ||| | || || | | || |||| ||||| || ||||| ||||||||||| Sbjct 237166 CATACTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCT 237225 Query 186666 AACAGATTCTGGTCACAGATC-----TTCGGAATTGCGTTTAGCAATAAGCGTTGGCTTC 186720 ||| | || ||||| || ||| || || |||| ||| |||||| ||||||| Sbjct 237226 AACCGTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGGC--- 237282 Query 186721 ATTTCTTCATGCTCTTTGTTCCTGTTATGGGTCTTTGGACCTCTTCCATT--GGCATTA- 186777 ||| ||| | ||||| | || | ||| | |||| | | ||| || | || Sbjct 237283 ----CTT-ATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGGTAGTAA 237337 Query 186778 -TTGGTCTTGCTCTTAACCTTCGTGCTTATGACTTTGT 186814 | ||||| ||||| || || ||||| |||||||| || Sbjct 237338 GTCGGTCTGGCTCTGAATCTACGTGCCTATGACTTCGT 237375 >seq1024 Length=717246 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 184090 AACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGT 184149 ||||| ||||| || | ||||||||||| ||||| |||||||| ||||| || ||| Sbjct 156788 AACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGT 156847 Query 184150 AATGCTCACAACTTCCCTCTCGACCT 184175 |||||||||||||||||||| ||||| Sbjct 156848 AATGCTCACAACTTCCCTCTAGACCT 156873 >seq11 Length=25514024 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 171000 TATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGGT 171059 || ||||| || | ||||| |||||| | || || || || || ||||| ||| Sbjct 15749124 TACATTCTGGACTCAGCTGAGACGGCAGGAGTGGAGCTGCCGTACTCATGCCGTGCCGGT 15749065 Query 171060 GCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATCT 171119 || ||||| | |||||| || | || | | |||| |||||||||| || ||| ||| Sbjct 15749064 GCGTGTTCCAGCTGTGCAGGCCAGATGGTGTCTGGTGCTGTTGATCAGTCAGATGGATCC 15749005 Query 171120 TTCCTTGATGATGATCAGATTGAATCAGGTTTCATTCTGACCTGCGTCTCATATCCTACA 171179 |||||||||||| |||||| | |||| ||| ||||| || || | ||||| || Sbjct 15749004 TTCCTTGATGATTCACAGATTTCAAAGGGTTACATGCTGACTTGTGTTGCCTATCC--CA 15748947 Query 171180 AGT--GATTGTGTAAT 171193 || |||||||| || Sbjct 15748946 TGTCAGATTGTGTCAT 15748931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622013954887080