Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_031242.1
Length=174307
Score E
Sequences producing significant alignments: (Bits) Value
seq9 149 7e-31
seq1382 145 9e-30
seq1035 122 1e-22
seq4 116 4e-21
seq1042 93.3 5e-14
seq10 93.3 5e-14
seq1024 87.8 2e-12
seq6 82.4 9e-11
>seq9
Length=34148863
Score = 149 bits (164), Expect = 7e-31
Identities = 181/244 (74%), Gaps = 2/244 (1%)
Strand=Plus/Plus
Query 164254 TTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGT 164313
|||||| | || ||||| |||||| || | ||| |||||||||||||||||| ||
Sbjct 1506916 TTACATTGATCATGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGATTGCTGT 1506975
Query 164314 AGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCA 164373
||||| || |||||||| || || || | ||| || ||| || |||| ||| | |||||
Sbjct 1506976 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCA 1507035
Query 164374 AGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACTACATGT-TGG 164432
||| ||||||||||| |||||| | || || ||| | | ||||||| ||||| | |
Sbjct 1507036 AGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTATTG 1507094
Query 164433 TCTTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTG 164492
| || | ||| || ||||||||||| ||||| | | || ||| | || ||| | ||||
Sbjct 1507095 TATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGTG 1507154
Query 164493 TGTT 164496
| ||
Sbjct 1507155 TATT 1507158
>seq1382
Length=172696
Score = 145 bits (160), Expect = 9e-30
Identities = 241/342 (70%), Gaps = 17/342 (5%)
Strand=Plus/Plus
Query 164447 CACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCA--GGTGTGTTTGGCGGTT 164504
||||||||||| ||||| || || | ||| | || |||| ||||| || ||||| |
Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556
Query 164505 CTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCG 164564
| || |||||||| ||||| ||||| |||| || ||| || | | || ||||| |
Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616
Query 164565 AAAATGAGTCC-CAGAACTATGGTTACAAGTTTGGTCAGGAAGAAGAAA----CCTACAA 164619
|||| || || || | | ||||||| || ||||| ||||||| || | |||||
Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675
Query 164620 CA-----TCGTTGCCGCTCACGGTTACTTTGGTCGTCTGATTTTCCAATACGCTTCCTTC 164674
| | || || ||||| ||||| || | || |||| ||||||| ||| |||
Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735
Query 164675 AACAACTCCCGTTCG--CTGCACTTC--TTCCTCGCAGCATGGCCTGTTGTCGGTATCTG 164730
|||||||| || | || || | ||| | ||||| ||||| ||| | ||||||||
Sbjct 123736 AACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCTG 123795
Query 164731 GTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAACCTCAA 164772
| | || ||| | || ||||||||||||| |||||||||||
Sbjct 123796 GGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837
>seq1035
Length=594915
Score = 122 bits (134), Expect = 1e-22
Identities = 305/457 (67%), Gaps = 35/457 (8%)
Strand=Plus/Plus
Query 165567 TTCGTTAGTGTTTTTCT-TATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACCGTC 165625
|||||| || ||||| | | |||| | ||| ||||| ||||| || || ||
Sbjct 236943 TTCGTTTCCGTATTTCTCTCTTTATCTACAGGGTCAATC----TGGTT--TCACATAGT- 236995
Query 165626 GTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGAC 165685
|| || || ||||| || || |||| | |||| ||||| ||| |||| |||||
Sbjct 236996 -TTTGGTGTAGCAGCTATATTTCGATGAATCCTCTGATTCCAACGGTGGAATAATTGGAC 237054
Query 165686 GCTGAATCCCTTTCACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTGC 165745
| |||| || || | |||||||| || ||| | ||||||| || |||| | ||
Sbjct 237055 GTTGAACCCTTTGAATATGATGGGAGTTT-AGGAGTATTAGGCGCTGCTCTGCTATGCGC 237113
Query 165746 CATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACTTT 165805
||||||||| | ||| | || ||||| | ||||||||| | ||||| || |
Sbjct 237114 TATTCATGGTCT----GTATAAAACACTTTATTCGAAGATGGTAACGGTGCAAATACATA 237169
Query 165806 CAAA----GCATTTGATAGTACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACC 165861
| || ||| | ||||| | || || |||||||| ||||||||||||||||
Sbjct 237170 CTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTAACC 237229
Query 165862 GTTTCTGGTCTCAGAT-----TTTTGGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTT 165916
|||| ||||| || || ||| || ||||||| |||||| ||||||
Sbjct 237230 GTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGG-------- 237281
Query 165917 CTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATT--GGTATCA--TTG 165972
| ||||| | ||||| | || | || | |||| ||| ||||| |||| | | |
Sbjct 237282 CCTTATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGGTAGTAAGTCG 237341
Query 165973 GTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTC 166009
|||| || || ||||| ||||| ||||| || || ||
Sbjct 237342 GTCTGGCTCTGAATCTACGTGCCTATGACTTCGTTTC 237378
>seq4
Length=30051516
Score = 116 bits (128), Expect = 4e-21
Identities = 125/164 (76%), Gaps = 6/164 (4%)
Strand=Plus/Plus
Query 164748 TTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTC 164807
||||||||||||| |||||||| || |||||||| |||||||| ||| | | || |||
Sbjct 1282766 TTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTC 1282825
Query 164808 AGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGG----GCATG 164863
|||||||||| | || || ||| || | |||| |||||| ||| | | |||
Sbjct 1282826 AGGGTCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATG 1282883
Query 164864 GAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCT 164907
||||| || || || ||||||||||| ||||||||| | |||||
Sbjct 1282884 GAAGTAATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927
>seq1042
Length=564079
Score = 93.3 bits (102), Expect = 5e-14
Identities = 81/101 (80%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 164369 GGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACTACATG 164428
|||||||| | | || |||| ||||||| || |||||||| || ||| ||| ||||
Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801
Query 164429 TTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCCCTT 164469
| || ||||||||||||||||||||||| |||||||| ||
Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATT 550760
>seq10
Length=33665772
Score = 93.3 bits (102), Expect = 5e-14
Identities = 227/341 (67%), Gaps = 21/341 (6%)
Strand=Plus/Plus
Query 164387 GATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAG 164446
|||| |||||| | || || ||||| || ||||||| |||| | || |||||||| ||
Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954
Query 164447 CACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAG--CAGGTGTGTTTGGCGGTT 164504
||||||||||| ||||| | || || ||| | || |||| | ||||| || ||| |
Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGGCCCT- 4333013
Query 164505 CTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCG 164564
||| | ||||| ||||| |||| | |||| | | | || | ||| |
Sbjct 4333014 --------AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065
Query 164565 AAAATGAGTCCCAG--AACTATGGTTACAAGTTTGGTCAGGAAGAAGAAAC-CTACAA-- 164619
|||| || ||| | | | | || || || ||| | || ||||| || |||||
Sbjct 4333066 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 4333123
Query 164620 ---CATCGTTGCCGCTCACGGTTACTTTGGTCGTCTGATTTTCCAATACGCTTCCTTCAA 164676
||| || | ||||| ||||| || | || ||| | |||||| ||| |||||
Sbjct 4333124 GAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAA 4333183
Query 164677 CAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTG 164717
|||||| ||| || |||||| | || || |||||||
Sbjct 4333184 CAACTCGACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224
>seq1024
Length=717246
Score = 87.8 bits (96), Expect = 2e-12
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 164822 AACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGT 164881
||||| ||||| || | ||||||||||| || || |||||||| ||||| || |||
Sbjct 156788 AACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGT 156847
Query 164882 AATGCTCACAACTTCCCTCTCGACCT 164907
|||||||||||||||||||| |||||
Sbjct 156848 AATGCTCACAACTTCCCTCTAGACCT 156873
>seq6
Length=34899179
Score = 82.4 bits (90), Expect = 9e-11
Identities = 101/136 (74%), Gaps = 4/136 (3%)
Strand=Plus/Minus
Query 165370 ATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAAC 165429
||||| | |||| |||||||||||||| | ||||| || || | || |||||||
Sbjct 26461273 ATTCTTTGTTGCTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCG---GTGCCAAT 26461217
Query 165430 TTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGC 165489
| || || || ||||||||||| || ||||| || || || ||||| ||||| || |||
Sbjct 26461216 TAGGCGGTCTGTGGACTTTTGTTGCTCTCCATGGTGCTTTCGCACTAATAGGCTT-ATGT 26461158
Query 165490 TTCGCCAGTTTGAACT 165505
| || || || ||||
Sbjct 26461157 TACGTCAATTCTAACT 26461142
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 557603799833880
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