Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq9 149 7e-31 seq1382 145 9e-30 seq1035 122 1e-22 seq4 116 4e-21 seq1042 93.3 5e-14 seq10 93.3 5e-14 seq1024 87.8 2e-12 seq6 82.4 9e-11 >seq9 Length=34148863 Score = 149 bits (164), Expect = 7e-31 Identities = 181/244 (74%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 164254 TTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGT 164313 |||||| | || ||||| |||||| || | ||| |||||||||||||||||| || Sbjct 1506916 TTACATTGATCATGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGATTGCTGT 1506975 Query 164314 AGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCA 164373 ||||| || |||||||| || || || | ||| || ||| || |||| ||| | ||||| Sbjct 1506976 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCA 1507035 Query 164374 AGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACTACATGT-TGG 164432 ||| ||||||||||| |||||| | || || ||| | | ||||||| ||||| | | Sbjct 1507036 AGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTATTG 1507094 Query 164433 TCTTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTG 164492 | || | ||| || ||||||||||| ||||| | | || ||| | || ||| | |||| Sbjct 1507095 TATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGTG 1507154 Query 164493 TGTT 164496 | || Sbjct 1507155 TATT 1507158 >seq1382 Length=172696 Score = 145 bits (160), Expect = 9e-30 Identities = 241/342 (70%), Gaps = 17/342 (5%) Strand=Plus/Plus Query 164447 CACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCA--GGTGTGTTTGGCGGTT 164504 ||||||||||| ||||| || || | ||| | || |||| ||||| || ||||| | Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556 Query 164505 CTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCG 164564 | || |||||||| ||||| ||||| |||| || ||| || | | || ||||| | Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616 Query 164565 AAAATGAGTCC-CAGAACTATGGTTACAAGTTTGGTCAGGAAGAAGAAA----CCTACAA 164619 |||| || || || | | ||||||| || ||||| ||||||| || | ||||| Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675 Query 164620 CA-----TCGTTGCCGCTCACGGTTACTTTGGTCGTCTGATTTTCCAATACGCTTCCTTC 164674 | | || || ||||| ||||| || | || |||| ||||||| ||| ||| Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735 Query 164675 AACAACTCCCGTTCG--CTGCACTTC--TTCCTCGCAGCATGGCCTGTTGTCGGTATCTG 164730 |||||||| || | || || | ||| | ||||| ||||| ||| | |||||||| Sbjct 123736 AACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCTG 123795 Query 164731 GTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAACCTCAA 164772 | | || ||| | || ||||||||||||| ||||||||||| Sbjct 123796 GGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 >seq1035 Length=594915 Score = 122 bits (134), Expect = 1e-22 Identities = 305/457 (67%), Gaps = 35/457 (8%) Strand=Plus/Plus Query 165567 TTCGTTAGTGTTTTTCT-TATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACCGTC 165625 |||||| || ||||| | | |||| | ||| ||||| ||||| || || || Sbjct 236943 TTCGTTTCCGTATTTCTCTCTTTATCTACAGGGTCAATC----TGGTT--TCACATAGT- 236995 Query 165626 GTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGAC 165685 || || || ||||| || || |||| | |||| ||||| ||| |||| ||||| Sbjct 236996 -TTTGGTGTAGCAGCTATATTTCGATGAATCCTCTGATTCCAACGGTGGAATAATTGGAC 237054 Query 165686 GCTGAATCCCTTTCACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTGC 165745 | |||| || || | |||||||| || ||| | ||||||| || |||| | || Sbjct 237055 GTTGAACCCTTTGAATATGATGGGAGTTT-AGGAGTATTAGGCGCTGCTCTGCTATGCGC 237113 Query 165746 CATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACTTT 165805 ||||||||| | ||| | || ||||| | ||||||||| | ||||| || | Sbjct 237114 TATTCATGGTCT----GTATAAAACACTTTATTCGAAGATGGTAACGGTGCAAATACATA 237169 Query 165806 CAAA----GCATTTGATAGTACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACC 165861 | || ||| | ||||| | || || |||||||| |||||||||||||||| Sbjct 237170 CTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTAACC 237229 Query 165862 GTTTCTGGTCTCAGAT-----TTTTGGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTT 165916 |||| ||||| || || ||| || ||||||| |||||| |||||| Sbjct 237230 GTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGG-------- 237281 Query 165917 CTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATT--GGTATCA--TTG 165972 | ||||| | ||||| | || | || | |||| ||| ||||| |||| | | | Sbjct 237282 CCTTATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGGTAGTAAGTCG 237341 Query 165973 GTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTC 166009 |||| || || ||||| ||||| ||||| || || || Sbjct 237342 GTCTGGCTCTGAATCTACGTGCCTATGACTTCGTTTC 237378 >seq4 Length=30051516 Score = 116 bits (128), Expect = 4e-21 Identities = 125/164 (76%), Gaps = 6/164 (4%) Strand=Plus/Plus Query 164748 TTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTC 164807 ||||||||||||| |||||||| || |||||||| |||||||| ||| | | || ||| Sbjct 1282766 TTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTC 1282825 Query 164808 AGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGG----GCATG 164863 |||||||||| | || || ||| || | |||| |||||| ||| | | ||| Sbjct 1282826 AGGGTCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATG 1282883 Query 164864 GAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCT 164907 ||||| || || || ||||||||||| ||||||||| | ||||| Sbjct 1282884 GAAGTAATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927 >seq1042 Length=564079 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 164369 GGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACTACATG 164428 |||||||| | | || |||| ||||||| || |||||||| || ||| ||| |||| Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801 Query 164429 TTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCCCTT 164469 | || ||||||||||||||||||||||| |||||||| || Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATT 550760 >seq10 Length=33665772 Score = 93.3 bits (102), Expect = 5e-14 Identities = 227/341 (67%), Gaps = 21/341 (6%) Strand=Plus/Plus Query 164387 GATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAG 164446 |||| |||||| | || || ||||| || ||||||| |||| | || |||||||| || Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954 Query 164447 CACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAG--CAGGTGTGTTTGGCGGTT 164504 ||||||||||| ||||| | || || ||| | || |||| | ||||| || ||| | Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGGCCCT- 4333013 Query 164505 CTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCG 164564 ||| | ||||| ||||| |||| | |||| | | | || | ||| | Sbjct 4333014 --------AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065 Query 164565 AAAATGAGTCCCAG--AACTATGGTTACAAGTTTGGTCAGGAAGAAGAAAC-CTACAA-- 164619 |||| || ||| | | | | || || || ||| | || ||||| || ||||| Sbjct 4333066 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 4333123 Query 164620 ---CATCGTTGCCGCTCACGGTTACTTTGGTCGTCTGATTTTCCAATACGCTTCCTTCAA 164676 ||| || | ||||| ||||| || | || ||| | |||||| ||| ||||| Sbjct 4333124 GAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAA 4333183 Query 164677 CAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTG 164717 |||||| ||| || |||||| | || || ||||||| Sbjct 4333184 CAACTCGACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224 >seq1024 Length=717246 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 164822 AACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGT 164881 ||||| ||||| || | ||||||||||| || || |||||||| ||||| || ||| Sbjct 156788 AACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGT 156847 Query 164882 AATGCTCACAACTTCCCTCTCGACCT 164907 |||||||||||||||||||| ||||| Sbjct 156848 AATGCTCACAACTTCCCTCTAGACCT 156873 >seq6 Length=34899179 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/136 (74%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 165370 ATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAAC 165429 ||||| | |||| |||||||||||||| | ||||| || || | || ||||||| Sbjct 26461273 ATTCTTTGTTGCTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCG---GTGCCAAT 26461217 Query 165430 TTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGC 165489 | || || || ||||||||||| || ||||| || || || ||||| ||||| || ||| Sbjct 26461216 TAGGCGGTCTGTGGACTTTTGTTGCTCTCCATGGTGCTTTCGCACTAATAGGCTT-ATGT 26461158 Query 165490 TTCGCCAGTTTGAACT 165505 | || || || |||| Sbjct 26461157 TACGTCAATTCTAACT 26461142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557603799833880