Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq1382 188 9e-43 seq1063 129 7e-25 seq9 129 7e-25 seq4 122 1e-22 seq11 104 3e-17 seq1024 96.9 4e-15 seq1042 86.0 7e-12 >seq1382 Length=172696 Score = 188 bits (208), Expect = 9e-43 Identities = 253/344 (74%), Gaps = 21/344 (6%) Strand=Plus/Plus Query 178117 CACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCT--GGTGTCTTTGGTGGTT 178174 ||||||||||| ||||| || || ||||||| || | ||| ||||| || || || | Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556 Query 178175 CTCTGTTCAGTGCGATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACC 178233 | || |||||||| ||||| ||||| |||| || || | | | | || | |||||||| Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACT 123615 Query 178234 GAGAACGAAAGTCAGAACTAT--GGTTACAAGTTCGGTCAAGAAGAAG----AGACCTAC 178287 || |||||| || | | || ||||||| |||||||||||||||| |||| ||| Sbjct 123616 GAAAACGAA--TCTGCATTAGCAGGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTAC 123673 Query 178288 AACA-----TCGTTGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCT 178342 || | | || |||||||||||||| || | || ||||| ||||||| || | Sbjct 123674 AATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTT 123733 Query 178343 TCAACAACTCCCGTTCG--CTGCACTTC--TTCCTCGCAGCATGGCCTGTTGTCGGTATC 178398 |||||||||| || | || || | ||| | ||||| ||||| ||| | |||||| Sbjct 123734 TCAACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATC 123793 Query 178399 TGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAA 178442 ||| |||| ||| | ||| ||||||||||||| ||||||||||| Sbjct 123794 TGGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 >seq1063 Length=431445 Score = 129 bits (142), Expect = 7e-25 Identities = 397/599 (66%), Gaps = 64/599 (11%) Strand=Plus/Minus Query 177832 CCCATCTGGGAAGCA-GCTTC-TCTC-GATGAGTGGCTCTACAATGGTGGTCCTTTCCAA 177888 || ||| |||||||| ||| | ||| | ||||||| |||||||||| ||||| | || Sbjct 54473 CCTATCCGGGAAGCAAGCTGCATCTGTGTTGAGTGGTTCTACAATGGCGGTCCCGTAGAA 54414 Query 177889 -CTCGTTATCTTCCACTTCCTGA-TCGGTATCTATGCATACATGGGTCGTGAGTGGGAAC 177946 || || | | ||||| ||| | ||| | | |||||||||| ||||| | Sbjct 54413 GCTAATTGTTTGACACTTA-TGACTTGGTGTAGCTTATTACATGGGTCCTGAGTTGCCGT 54355 Query 177947 TTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCG 178006 || || ||||||||||||| ||||| ||| ||||| ||||| || || Sbjct 54354 TTCAATA-----TAGGTATGCGTCCTTGGATTGCTGTTGCATATGATGCTC--GTTGCTA 54302 Query 178007 CAGCA-TCTGCTGTATT--CCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTA 178063 | ||| | | || || || | || || || | ||||||| | ||||||||||| || Sbjct 54301 CTGCAGTTTTCTTGATCGACCCTATTGATTCTATTAGTCAAGGATGTTTCTCTGACGATA 54242 Query 178064 TGCCCCTGGGTAT-CAG----------------------TGGCACCTTCAACTACATGCT 178100 |||| | || || ||| ||| || ||| ||| |||| | Sbjct 54241 TGCCTTTAGGAATACAGATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGAT 54182 Query 178101 TGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCT-- 178158 ||| || | ||||| ||||||||||| ||||| | || |||||||| || || ||| Sbjct 54181 TGTATTACTGGCAGAACACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCT 54122 Query 178159 GGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGGTTCTCTGGTT-ACTTCCTCGCT 178217 ||||| || || | || ||| | ||||| ||||| |||| ||| || | | Sbjct 54121 GGTGTATTCGG-----CCCT----AGTACTATGCATGGTTCCTTGGTCCACT--CTTGTT 54073 Query 178218 GGTTC-GTGAAACCACCGAGAACGAAAGTCAGAACTATG--GTTACAAGTTCGGTCAAGA 178274 || | |||| ||| || |||||| || | || || || |||||| |||| Sbjct 54072 TCATCAGGGAAATCACTGAAAACGAA--TCCGCGTTAGCAAGTGACTGATTCGGTAAAGA 54015 Query 178275 AGAAGAGACCT-ACAACA-----TCGTTGCTGCTCATGGTTACTTCGGTCGCCTGATCTT 178328 |||||||| | |||| | | || |||||||||||||| || | || ||||||| Sbjct 54014 GGAAGAGACTTTACAATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTT 53955 Query 178329 CCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTG 178387 |||||| || ||||||||||| ||||| | || |||||| | || || ||||||| Sbjct 53954 CCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896 >seq9 Length=34148863 Score = 129 bits (142), Expect = 7e-25 Identities = 176/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 177925 TACATGGGTCGTGAGTGGGAACTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTA 177984 ||||| | || ||||| |||||| || | || ||||||||||| ||||| ||| Sbjct 1506917 TACATTGATCATGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGATTGCTGTT 1506976 Query 177985 GCATACTCTGCTCCAGTCGCCGCAGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCAA 178044 ||||| || ||||| || || || || ||||||| ||| | | || ||| | |||||| Sbjct 1506977 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 1507036 Query 178045 GGTTCTTTCTCTGACGCTATGCCCCTGGGTATCAGTGGCACCTTCAACTACATG-CTTGT 178103 || ||||||||| | |||||| | || || | ||| ||||||| |||| |||| Sbjct 1507037 GGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTATTGT 1507095 Query 178104 CTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGT 178163 || | ||||| ||||||||||| ||||| | | |||||||| || || ||||||| Sbjct 1507096 ATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGTGT 1507155 Query 178164 CTT 178166 || Sbjct 1507156 ATT 1507158 Score = 113 bits (124), Expect = 5e-20 Identities = 165/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 176172 TATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCAACTACTCGTGCCGCGCTGGT 176231 || ||||||||||| || ||||| |||||||| || || ||||| ||||| ||||| Sbjct 33363581 TACATTCTGGATGCAGCCGAGGATGCAGGAGTGGAGCTGCCATACTCATGCCGAGCTGGA 33363522 Query 176232 GCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGGTAGATCAAAGCGATCAATCG 176291 || ||||||| ||||| || || | | ||||||| || ||||| ||| ||| Sbjct 33363521 GCATGTTCGACGTGTGCTGGTCAATTGGTGTCGGGCAATGTCGATCAGTCGGATGGATCC 33363462 Query 176292 TTCCTTGATGATGACCAGA--TCGATGCAGGTTTCATTCTGACTTGTGTTTCATATCCTA 176349 ||||| ||||| |||| |||| | |||| || ||||| ||||| || ||||| | Sbjct 33363461 TTCCTCGATGAAACACAGATGTCGAAG--GGTTATATCCTGACCTGTGTCTCCTATCCGA 33363404 Query 176350 CGAGC-GATTGTGTGATTGAGACTGAGAAAGAAGAGGAACTTTATTGAT 176397 || | || || || || | ||| | ||||||| ||||| ||||||| Sbjct 33363403 -GATCAGAATGCGTCATCTACACTCACAAAGAAGGCGAACTATATTGAT 33363356 >seq4 Length=30051516 Score = 122 bits (134), Expect = 1e-22 Identities = 129/169 (76%), Gaps = 6/169 (4%) Strand=Plus/Plus Query 178413 TGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGA 178472 |||| ||||||||||||| |||||||| || |||||||| |||||||| ||| | | || Sbjct 1282761 TGGTATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGA 1282820 Query 178473 TAGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGT-- 178530 |||||||| ||| | || || ||| || | |||| |||||| ||||||| Sbjct 1282821 CAGTCAGGGTCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTAT 1282878 Query 178531 --ATGGAAGTCATGCACGAGCGTAATGCTCACAACTTCCCTCTTGACCT 178577 |||||||| || || || ||||||||||| ||||||||| | ||||| Sbjct 1282879 GGATGGAAGTAATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927 >seq11 Length=25514024 Score = 104 bits (114), Expect = 3e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 176172 TATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCAACTACTCGTGCCGCGCTGGT 176231 || |||||||| | |||||| |||||||| || || ||||| ||||| || ||| Sbjct 15749124 TACATTCTGGACTCAGCTGAGACGGCAGGAGTGGAGCTGCCGTACTCATGCCGTGCCGGT 15749065 Query 176232 GCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGGTAGATCAAAGCGATCAATCG 176291 || ||||| || |||||||| | | | || || | || ||||| ||| ||| Sbjct 15749064 GCGTGTTCCAGCTGTGCAGGCCAGATGGTGTCTGGTGCTGTTGATCAGTCAGATGGATCC 15749005 Query 176292 TTCCTTGATGATGACCAGAT--CGATGCAGGTTTCATTCTGACTTGTGTTTCATATCCTA 176349 |||||||||||| ||||| | | | |||| ||| |||||||||||| | ||||| | Sbjct 15749004 TTCCTTGATGATTCACAGATTTCAAAG--GGTTACATGCTGACTTGTGTTGCCTATCCCA 15748947 Query 176350 CGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGAACTTTATTGATGG 176399 | |||||||| ||| |||| | || ||| || || || |||||| Sbjct 15748946 TGTCAGATTGTGTCATTCAGACACACAAGGAAAGTGATCTGTACTGATGG 15748897 >seq1024 Length=717246 Score = 96.9 bits (106), Expect = 4e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 178492 AACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGT 178551 ||||| ||||| || | ||||||||||| |||||||||||||| ||||| || ||| Sbjct 156788 AACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGT 156847 Query 178552 AATGCTCACAACTTCCCTCTTGACCT 178577 |||||||||||||||||||| ||||| Sbjct 156848 AATGCTCACAACTTCCCTCTAGACCT 156873 >seq1042 Length=564079 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 178039 GGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTATCAGTGGCACCTTCAACTACATG 178098 |||||||| | | || || | |||||| | || ||| ||| || ||| ||| |||| Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801 Query 178099 CTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCT 178158 |||| ||||| || |||||||||||||| |||||||| || ||||||| || | ||| Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCT 550741 Query 178159 GG 178160 || Sbjct 550740 GG 550739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596253092575440