Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_031935.1
Length=186386
Score E
Sequences producing significant alignments: (Bits) Value
seq1382 188 9e-43
seq1063 129 7e-25
seq9 129 7e-25
seq4 122 1e-22
seq11 104 3e-17
seq1024 96.9 4e-15
seq1042 86.0 7e-12
>seq1382
Length=172696
Score = 188 bits (208), Expect = 9e-43
Identities = 253/344 (74%), Gaps = 21/344 (6%)
Strand=Plus/Plus
Query 178117 CACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCT--GGTGTCTTTGGTGGTT 178174
||||||||||| ||||| || || ||||||| || | ||| ||||| || || || |
Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556
Query 178175 CTCTGTTCAGTGCGATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACC 178233
| || |||||||| ||||| ||||| |||| || || | | | | || | ||||||||
Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACT 123615
Query 178234 GAGAACGAAAGTCAGAACTAT--GGTTACAAGTTCGGTCAAGAAGAAG----AGACCTAC 178287
|| |||||| || | | || ||||||| |||||||||||||||| |||| |||
Sbjct 123616 GAAAACGAA--TCTGCATTAGCAGGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTAC 123673
Query 178288 AACA-----TCGTTGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCT 178342
|| | | || |||||||||||||| || | || ||||| ||||||| || |
Sbjct 123674 AATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTT 123733
Query 178343 TCAACAACTCCCGTTCG--CTGCACTTC--TTCCTCGCAGCATGGCCTGTTGTCGGTATC 178398
|||||||||| || | || || | ||| | ||||| ||||| ||| | ||||||
Sbjct 123734 TCAACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATC 123793
Query 178399 TGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAA 178442
||| |||| ||| | ||| ||||||||||||| |||||||||||
Sbjct 123794 TGGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837
>seq1063
Length=431445
Score = 129 bits (142), Expect = 7e-25
Identities = 397/599 (66%), Gaps = 64/599 (11%)
Strand=Plus/Minus
Query 177832 CCCATCTGGGAAGCA-GCTTC-TCTC-GATGAGTGGCTCTACAATGGTGGTCCTTTCCAA 177888
|| ||| |||||||| ||| | ||| | ||||||| |||||||||| ||||| | ||
Sbjct 54473 CCTATCCGGGAAGCAAGCTGCATCTGTGTTGAGTGGTTCTACAATGGCGGTCCCGTAGAA 54414
Query 177889 -CTCGTTATCTTCCACTTCCTGA-TCGGTATCTATGCATACATGGGTCGTGAGTGGGAAC 177946
|| || | | ||||| ||| | ||| | | |||||||||| ||||| |
Sbjct 54413 GCTAATTGTTTGACACTTA-TGACTTGGTGTAGCTTATTACATGGGTCCTGAGTTGCCGT 54355
Query 177947 TTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCG 178006
|| || ||||||||||||| ||||| ||| ||||| ||||| || ||
Sbjct 54354 TTCAATA-----TAGGTATGCGTCCTTGGATTGCTGTTGCATATGATGCTC--GTTGCTA 54302
Query 178007 CAGCA-TCTGCTGTATT--CCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTA 178063
| ||| | | || || || | || || || | ||||||| | ||||||||||| ||
Sbjct 54301 CTGCAGTTTTCTTGATCGACCCTATTGATTCTATTAGTCAAGGATGTTTCTCTGACGATA 54242
Query 178064 TGCCCCTGGGTAT-CAG----------------------TGGCACCTTCAACTACATGCT 178100
|||| | || || ||| ||| || ||| ||| |||| |
Sbjct 54241 TGCCTTTAGGAATACAGATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGAT 54182
Query 178101 TGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCT-- 178158
||| || | ||||| ||||||||||| ||||| | || |||||||| || || |||
Sbjct 54181 TGTATTACTGGCAGAACACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCT 54122
Query 178159 GGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGGTTCTCTGGTT-ACTTCCTCGCT 178217
||||| || || | || ||| | ||||| ||||| |||| ||| || | |
Sbjct 54121 GGTGTATTCGG-----CCCT----AGTACTATGCATGGTTCCTTGGTCCACT--CTTGTT 54073
Query 178218 GGTTC-GTGAAACCACCGAGAACGAAAGTCAGAACTATG--GTTACAAGTTCGGTCAAGA 178274
|| | |||| ||| || |||||| || | || || || |||||| ||||
Sbjct 54072 TCATCAGGGAAATCACTGAAAACGAA--TCCGCGTTAGCAAGTGACTGATTCGGTAAAGA 54015
Query 178275 AGAAGAGACCT-ACAACA-----TCGTTGCTGCTCATGGTTACTTCGGTCGCCTGATCTT 178328
|||||||| | |||| | | || |||||||||||||| || | || |||||||
Sbjct 54014 GGAAGAGACTTTACAATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTT 53955
Query 178329 CCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTG 178387
|||||| || ||||||||||| ||||| | || |||||| | || || |||||||
Sbjct 53954 CCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896
>seq9
Length=34148863
Score = 129 bits (142), Expect = 7e-25
Identities = 176/243 (72%), Gaps = 2/243 (1%)
Strand=Plus/Plus
Query 177925 TACATGGGTCGTGAGTGGGAACTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTA 177984
||||| | || ||||| |||||| || | || ||||||||||| ||||| |||
Sbjct 1506917 TACATTGATCATGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGATTGCTGTT 1506976
Query 177985 GCATACTCTGCTCCAGTCGCCGCAGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCAA 178044
||||| || ||||| || || || || ||||||| ||| | | || ||| | ||||||
Sbjct 1506977 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 1507036
Query 178045 GGTTCTTTCTCTGACGCTATGCCCCTGGGTATCAGTGGCACCTTCAACTACATG-CTTGT 178103
|| ||||||||| | |||||| | || || | ||| ||||||| |||| ||||
Sbjct 1507037 GGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTATTGT 1507095
Query 178104 CTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGT 178163
|| | ||||| ||||||||||| ||||| | | |||||||| || || |||||||
Sbjct 1507096 ATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGTGT 1507155
Query 178164 CTT 178166
||
Sbjct 1507156 ATT 1507158
Score = 113 bits (124), Expect = 5e-20
Identities = 165/229 (72%), Gaps = 6/229 (3%)
Strand=Plus/Minus
Query 176172 TATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCAACTACTCGTGCCGCGCTGGT 176231
|| ||||||||||| || ||||| |||||||| || || ||||| ||||| |||||
Sbjct 33363581 TACATTCTGGATGCAGCCGAGGATGCAGGAGTGGAGCTGCCATACTCATGCCGAGCTGGA 33363522
Query 176232 GCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGGTAGATCAAAGCGATCAATCG 176291
|| ||||||| ||||| || || | | ||||||| || ||||| ||| |||
Sbjct 33363521 GCATGTTCGACGTGTGCTGGTCAATTGGTGTCGGGCAATGTCGATCAGTCGGATGGATCC 33363462
Query 176292 TTCCTTGATGATGACCAGA--TCGATGCAGGTTTCATTCTGACTTGTGTTTCATATCCTA 176349
||||| ||||| |||| |||| | |||| || ||||| ||||| || ||||| |
Sbjct 33363461 TTCCTCGATGAAACACAGATGTCGAAG--GGTTATATCCTGACCTGTGTCTCCTATCCGA 33363404
Query 176350 CGAGC-GATTGTGTGATTGAGACTGAGAAAGAAGAGGAACTTTATTGAT 176397
|| | || || || || | ||| | ||||||| ||||| |||||||
Sbjct 33363403 -GATCAGAATGCGTCATCTACACTCACAAAGAAGGCGAACTATATTGAT 33363356
>seq4
Length=30051516
Score = 122 bits (134), Expect = 1e-22
Identities = 129/169 (76%), Gaps = 6/169 (4%)
Strand=Plus/Plus
Query 178413 TGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGA 178472
|||| ||||||||||||| |||||||| || |||||||| |||||||| ||| | | ||
Sbjct 1282761 TGGTATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGA 1282820
Query 178473 TAGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGT-- 178530
|||||||| ||| | || || ||| || | |||| |||||| |||||||
Sbjct 1282821 CAGTCAGGGTCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTAT 1282878
Query 178531 --ATGGAAGTCATGCACGAGCGTAATGCTCACAACTTCCCTCTTGACCT 178577
|||||||| || || || ||||||||||| ||||||||| | |||||
Sbjct 1282879 GGATGGAAGTAATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927
>seq11
Length=25514024
Score = 104 bits (114), Expect = 3e-17
Identities = 162/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 176172 TATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCAACTACTCGTGCCGCGCTGGT 176231
|| |||||||| | |||||| |||||||| || || ||||| ||||| || |||
Sbjct 15749124 TACATTCTGGACTCAGCTGAGACGGCAGGAGTGGAGCTGCCGTACTCATGCCGTGCCGGT 15749065
Query 176232 GCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGGTAGATCAAAGCGATCAATCG 176291
|| ||||| || |||||||| | | | || || | || ||||| ||| |||
Sbjct 15749064 GCGTGTTCCAGCTGTGCAGGCCAGATGGTGTCTGGTGCTGTTGATCAGTCAGATGGATCC 15749005
Query 176292 TTCCTTGATGATGACCAGAT--CGATGCAGGTTTCATTCTGACTTGTGTTTCATATCCTA 176349
|||||||||||| ||||| | | | |||| ||| |||||||||||| | ||||| |
Sbjct 15749004 TTCCTTGATGATTCACAGATTTCAAAG--GGTTACATGCTGACTTGTGTTGCCTATCCCA 15748947
Query 176350 CGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGAACTTTATTGATGG 176399
| |||||||| ||| |||| | || ||| || || || ||||||
Sbjct 15748946 TGTCAGATTGTGTCATTCAGACACACAAGGAAAGTGATCTGTACTGATGG 15748897
>seq1024
Length=717246
Score = 96.9 bits (106), Expect = 4e-15
Identities = 73/86 (85%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 178492 AACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGT 178551
||||| ||||| || | ||||||||||| |||||||||||||| ||||| || |||
Sbjct 156788 AACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGT 156847
Query 178552 AATGCTCACAACTTCCCTCTTGACCT 178577
|||||||||||||||||||| |||||
Sbjct 156848 AATGCTCACAACTTCCCTCTAGACCT 156873
>seq1042
Length=564079
Score = 86.0 bits (94), Expect = 7e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 178039 GGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTATCAGTGGCACCTTCAACTACATG 178098
|||||||| | | || || | |||||| | || ||| ||| || ||| ||| ||||
Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801
Query 178099 CTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCT 178158
|||| ||||| || |||||||||||||| |||||||| || ||||||| || | |||
Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCT 550741
Query 178159 GG 178160
||
Sbjct 550740 GG 550739
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596253092575440
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