Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_031944.1
Length=185102
Score E
Sequences producing significant alignments: (Bits) Value
seq1382 145 9e-30
seq9 118 1e-21
seq4 109 7e-19
seq1035 105 8e-18
seq1063 104 3e-17
seq10 100 3e-16
seq1024 93.3 5e-14
seq1042 87.8 2e-12
>seq1382
Length=172696
Score = 145 bits (160), Expect = 9e-30
Identities = 242/343 (71%), Gaps = 19/343 (6%)
Strand=Plus/Plus
Query 169871 CACAACATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCG--GGAGTGTTTGGTGGGT 169928
||||||||||| ||||| || || ||||| | ||| | || || || || || || |
Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556
Query 169929 CTCTGTTTAGCGCGATGCACGGTAGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCG 169988
| || || || || ||||| ||| | | || || || ||| | || | |||||||| |
Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616
Query 169989 AGAACGAGTCC-CAGAACTATGGTTACAAGTTCGGTCAAGAAGAAG----AGACCTACAA 170043
| ||||| || || | | ||||||| |||||||||||||||| |||| |||||
Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675
Query 170044 CA-----TCGTTGCCGCTCACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTC 170098
| | || || ||||| ||||| || | || ||||| ||||||| ||| |||
Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735
Query 170099 AACAACTCCCGTTCACTGC---ACTT--CTTCCTCGCAGCATGGCCTGTTGTTGGCATCT 170153
|||||||| || | ||| | || | ||| | ||||| ||||| ||| |||| ||||
Sbjct 123736 AACAACTCTCGCT-ACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCT 123794
Query 170154 GGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAACCTGAA 170196
|| |||| ||| | ||| | ||| ||||| |||||||| ||
Sbjct 123795 GGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837
>seq9
Length=34148863
Score = 118 bits (130), Expect = 1e-21
Identities = 147/199 (74%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 169711 TCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGC 169770
|||||||||||| |||||||| |||||| || || ||||| ||||| || || | ||
Sbjct 1506949 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 1507008
Query 169771 TGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTAT 169830
||||||| || ||||||| |||| ||||| |||||||| | ||||||| | || ||
Sbjct 1507009 TGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAAT 1507068
Query 169831 CTCGGGAACCTTTAACTACATG-CTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACC 169889
|| | | || |||| |||| | || || | || || ||||||||||| ||||| |
Sbjct 1507069 ATCTAGCA-TTTCAACTTCATGTATTGTATTTCTGGCAGAACACAACATCCTTATGCATC 1507127
Query 169890 CCTTCCACATGCTTGGTGT 169908
| |||||| | |||||
Sbjct 1507128 TGGTTCACATGTTAGGTGT 1507146
>seq4
Length=30051516
Score = 109 bits (120), Expect = 7e-19
Identities = 121/160 (76%), Gaps = 6/160 (4%)
Strand=Plus/Plus
Query 170176 CACGATGGCGTTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGG 170235
||| ||||| |||||||| || |||||||| |||||||| ||| | | || |||||||
Sbjct 1282770 CACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTCAGGG 1282829
Query 170236 TCGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTG----GCATGGAAG 170291
|||||| | || || ||| || | |||| |||||| ||||| | |||||||
Sbjct 1282830 TCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATGGAAG 1282887
Query 170292 TGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCT 170331
| || || || ||||||||||| ||||||||| | |||||
Sbjct 1282888 TAATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927
>seq1035
Length=594915
Score = 105 bits (116), Expect = 8e-18
Identities = 261/393 (66%), Gaps = 26/393 (7%)
Strand=Plus/Plus
Query 171069 TTTGGAGTTGCAGCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACA 171128
||||| || ||||| || || || | | |||| | ||| | | | || |||||
Sbjct 236996 TTTGGTGTAGCAGCTATATTTCGATGAATCCTCTGATTCCAACGGTGGAATAATTGGACG 237055
Query 171129 CTGAATCCATTTCATATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCA 171188
|||| || || |||||||||| ||| ||| | | |||| ||| |||| | ||
Sbjct 237056 TTGAACCCTTTGAATATGATGGGAGTTT-AGGAGTATTAGGCGCTGCTCTGCTATGCGCT 237114
Query 171189 ATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCT-- 171246
||||||||| | ||| | || ||||| | ||||||||| | ||||| || |
Sbjct 237115 ATTCATGGTCT----GTATAAAACACTTTATTCGAAGATGGTAACGGTGCAAATACATAC 237170
Query 171247 --TTAAGGCATTTGACACGACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCG 171304
|| || ||| || | ||||| | |||||||| ||||| |||||||||||||| ||
Sbjct 237171 TGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTAACCG 237230
Query 171305 TTTCTGGTCGCAGAT-----TTTTGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTC 171359
||| ||||| || || ||| || | || || |||||| |||||| |
Sbjct 237231 TTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGG--------C 237282
Query 171360 TTTATGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCAGTAGTCT--GGGGATTA--TTGG 171415
||||| | ||||| | || | ||| | ||| | ||| | | ||| | || | ||
Sbjct 237283 CTTATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGGTAGTAAGTCGG 237342
Query 171416 TCTTGCTCTTAATCTTAGGGCTTATGATTTCGT 171448
||| ||||| ||||| | || ||||| |||||
Sbjct 237343 TCTGGCTCTGAATCTACGTGCCTATGACTTCGT 237375
>seq1063
Length=431445
Score = 104 bits (114), Expect = 3e-17
Identities = 226/334 (68%), Gaps = 17/334 (5%)
Strand=Plus/Minus
Query 169816 TATGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAA 169875
||||||| | || || || || || || ||| |||| | || || | || || |||||
Sbjct 54220 TATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAACACAA 54161
Query 169876 CATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTT 169935
|||||| ||||| | || |||||| | ||||| || |||| | | || |
Sbjct 54160 CATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTAT--TCGGCCC----- 54108
Query 169936 TAGCGCGATGCACGGTAGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGA 169995
||| | ||||| ||| | | ||| || || | || | |||| ||| || |||||
Sbjct 54107 TAGTACTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTGAAAACGA 54048
Query 169996 GTCCCAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCT-ACAACA-----TC 170047
||| | | | | || || |||||| |||| |||||||| | |||| | |
Sbjct 54047 ATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGTATT 53990
Query 170048 GTTGCCGCTCACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCC 170107
|| || ||||| ||||| || | || ||||||||||||| ||| |||||||||||
Sbjct 53989 GTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCT 53930
Query 170108 CGTTCACTGCACTTCTTCCTCGCAGCATGGCCTG 170141
||||| | || |||||| | || || |||||||
Sbjct 53929 CGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896
>seq10
Length=33665772
Score = 100 bits (110), Expect = 3e-16
Identities = 225/334 (67%), Gaps = 17/334 (5%)
Strand=Plus/Plus
Query 169816 TATGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAA 169875
||||||| | || || || || || || |||| |||| | || ||||| || || |||||
Sbjct 4332900 TATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAACACAA 4332959
Query 169876 CATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTT 169935
|||||| ||||| | || |||||| | ||||| || |||| | | || |
Sbjct 4332960 CATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTAT--TCGGCC-----C 4333012
Query 169936 TAGCGCGATGCACGGTAGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGA 169995
||| | ||||| ||| | | |||| || || | || | |||| ||| || |||||
Sbjct 4333013 TAGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTGAAAACGA 4333072
Query 169996 GTCCCAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGAC-CTACAA-----CATC 170047
||| | | | | || || |||||| |||| |||||||| ||||| |||
Sbjct 4333073 ATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGCATT 4333130
Query 170048 GTTGCCGCTCACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCC 170107
|| | ||||| ||||| || | || ||| || |||||| ||| |||||||||||
Sbjct 4333131 GTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAACAACTCG 4333190
Query 170108 CGTTCACTGCACTTCTTCCTCGCAGCATGGCCTG 170141
||| || |||||| | || || |||||||
Sbjct 4333191 ACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224
>seq1024
Length=717246
Score = 93.3 bits (102), Expect = 5e-14
Identities = 72/86 (84%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 170246 AACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGT 170305
||||| ||||| || | ||||||||||| ||||| |||||||| ||||| || |||
Sbjct 156788 AACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGT 156847
Query 170306 AATGCTCACAACTTCCCTCTCGACCT 170331
|||||||||||||||||||| |||||
Sbjct 156848 AATGCTCACAACTTCCCTCTAGACCT 156873
>seq1042
Length=564079
Score = 87.8 bits (96), Expect = 2e-12
Identities = 97/126 (77%), Gaps = 4/126 (3%)
Strand=Plus/Minus
Query 169791 TTGGGCAAGG--GTCGTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACTA 169848
|||| ||||| || ||| || || | |||||||| || ||||| || || || |||
Sbjct 550862 TTGGTCAAGGAAGT-GTT-TCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTT 550805
Query 169849 CATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACCCCTTCCACATGCTTGGTGT 169908
|||| | || ||||| ||||||||||||||||| |||||||| || ||||| | ||| |
Sbjct 550804 CATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTT 550745
Query 169909 TGCGGG 169914
||| ||
Sbjct 550744 TGCTGG 550739
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592144665397680
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