Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq1382 145 9e-30 seq9 118 1e-21 seq4 109 7e-19 seq1035 105 8e-18 seq1063 104 3e-17 seq10 100 3e-16 seq1024 93.3 5e-14 seq1042 87.8 2e-12 >seq1382 Length=172696 Score = 145 bits (160), Expect = 9e-30 Identities = 242/343 (71%), Gaps = 19/343 (6%) Strand=Plus/Plus Query 169871 CACAACATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCG--GGAGTGTTTGGTGGGT 169928 ||||||||||| ||||| || || ||||| | ||| | || || || || || || | Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556 Query 169929 CTCTGTTTAGCGCGATGCACGGTAGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCG 169988 | || || || || ||||| ||| | | || || || ||| | || | |||||||| | Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616 Query 169989 AGAACGAGTCC-CAGAACTATGGTTACAAGTTCGGTCAAGAAGAAG----AGACCTACAA 170043 | ||||| || || | | ||||||| |||||||||||||||| |||| ||||| Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675 Query 170044 CA-----TCGTTGCCGCTCACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTC 170098 | | || || ||||| ||||| || | || ||||| ||||||| ||| ||| Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735 Query 170099 AACAACTCCCGTTCACTGC---ACTT--CTTCCTCGCAGCATGGCCTGTTGTTGGCATCT 170153 |||||||| || | ||| | || | ||| | ||||| ||||| ||| |||| |||| Sbjct 123736 AACAACTCTCGCT-ACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCT 123794 Query 170154 GGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAACCTGAA 170196 || |||| ||| | ||| | ||| ||||| |||||||| || Sbjct 123795 GGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 >seq9 Length=34148863 Score = 118 bits (130), Expect = 1e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 169711 TCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGC 169770 |||||||||||| |||||||| |||||| || || ||||| ||||| || || | || Sbjct 1506949 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 1507008 Query 169771 TGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTAT 169830 ||||||| || ||||||| |||| ||||| |||||||| | ||||||| | || || Sbjct 1507009 TGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAAT 1507068 Query 169831 CTCGGGAACCTTTAACTACATG-CTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACC 169889 || | | || |||| |||| | || || | || || ||||||||||| ||||| | Sbjct 1507069 ATCTAGCA-TTTCAACTTCATGTATTGTATTTCTGGCAGAACACAACATCCTTATGCATC 1507127 Query 169890 CCTTCCACATGCTTGGTGT 169908 | |||||| | ||||| Sbjct 1507128 TGGTTCACATGTTAGGTGT 1507146 >seq4 Length=30051516 Score = 109 bits (120), Expect = 7e-19 Identities = 121/160 (76%), Gaps = 6/160 (4%) Strand=Plus/Plus Query 170176 CACGATGGCGTTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGG 170235 ||| ||||| |||||||| || |||||||| |||||||| ||| | | || ||||||| Sbjct 1282770 CACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTCAGGG 1282829 Query 170236 TCGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTG----GCATGGAAG 170291 |||||| | || || ||| || | |||| |||||| ||||| | ||||||| Sbjct 1282830 TCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATGGAAG 1282887 Query 170292 TGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCT 170331 | || || || ||||||||||| ||||||||| | ||||| Sbjct 1282888 TAATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927 >seq1035 Length=594915 Score = 105 bits (116), Expect = 8e-18 Identities = 261/393 (66%), Gaps = 26/393 (7%) Strand=Plus/Plus Query 171069 TTTGGAGTTGCAGCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACA 171128 ||||| || ||||| || || || | | |||| | ||| | | | || ||||| Sbjct 236996 TTTGGTGTAGCAGCTATATTTCGATGAATCCTCTGATTCCAACGGTGGAATAATTGGACG 237055 Query 171129 CTGAATCCATTTCATATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCA 171188 |||| || || |||||||||| ||| ||| | | |||| ||| |||| | || Sbjct 237056 TTGAACCCTTTGAATATGATGGGAGTTT-AGGAGTATTAGGCGCTGCTCTGCTATGCGCT 237114 Query 171189 ATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCT-- 171246 ||||||||| | ||| | || ||||| | ||||||||| | ||||| || | Sbjct 237115 ATTCATGGTCT----GTATAAAACACTTTATTCGAAGATGGTAACGGTGCAAATACATAC 237170 Query 171247 --TTAAGGCATTTGACACGACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCG 171304 || || ||| || | ||||| | |||||||| ||||| |||||||||||||| || Sbjct 237171 TGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTAACCG 237230 Query 171305 TTTCTGGTCGCAGAT-----TTTTGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTC 171359 ||| ||||| || || ||| || | || || |||||| |||||| | Sbjct 237231 TTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGG--------C 237282 Query 171360 TTTATGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCAGTAGTCT--GGGGATTA--TTGG 171415 ||||| | ||||| | || | ||| | ||| | ||| | | ||| | || | || Sbjct 237283 CTTATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGGTAGTAAGTCGG 237342 Query 171416 TCTTGCTCTTAATCTTAGGGCTTATGATTTCGT 171448 ||| ||||| ||||| | || ||||| ||||| Sbjct 237343 TCTGGCTCTGAATCTACGTGCCTATGACTTCGT 237375 >seq1063 Length=431445 Score = 104 bits (114), Expect = 3e-17 Identities = 226/334 (68%), Gaps = 17/334 (5%) Strand=Plus/Minus Query 169816 TATGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAA 169875 ||||||| | || || || || || || ||| |||| | || || | || || ||||| Sbjct 54220 TATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAACACAA 54161 Query 169876 CATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTT 169935 |||||| ||||| | || |||||| | ||||| || |||| | | || | Sbjct 54160 CATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTAT--TCGGCCC----- 54108 Query 169936 TAGCGCGATGCACGGTAGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGA 169995 ||| | ||||| ||| | | ||| || || | || | |||| ||| || ||||| Sbjct 54107 TAGTACTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTGAAAACGA 54048 Query 169996 GTCCCAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCT-ACAACA-----TC 170047 ||| | | | | || || |||||| |||| |||||||| | |||| | | Sbjct 54047 ATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGTATT 53990 Query 170048 GTTGCCGCTCACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCC 170107 || || ||||| ||||| || | || ||||||||||||| ||| ||||||||||| Sbjct 53989 GTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCT 53930 Query 170108 CGTTCACTGCACTTCTTCCTCGCAGCATGGCCTG 170141 ||||| | || |||||| | || || ||||||| Sbjct 53929 CGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896 >seq10 Length=33665772 Score = 100 bits (110), Expect = 3e-16 Identities = 225/334 (67%), Gaps = 17/334 (5%) Strand=Plus/Plus Query 169816 TATGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAA 169875 ||||||| | || || || || || || |||| |||| | || ||||| || || ||||| Sbjct 4332900 TATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAACACAA 4332959 Query 169876 CATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTT 169935 |||||| ||||| | || |||||| | ||||| || |||| | | || | Sbjct 4332960 CATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTAT--TCGGCC-----C 4333012 Query 169936 TAGCGCGATGCACGGTAGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGA 169995 ||| | ||||| ||| | | |||| || || | || | |||| ||| || ||||| Sbjct 4333013 TAGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTGAAAACGA 4333072 Query 169996 GTCCCAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGAC-CTACAA-----CATC 170047 ||| | | | | || || |||||| |||| |||||||| ||||| ||| Sbjct 4333073 ATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGCATT 4333130 Query 170048 GTTGCCGCTCACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCC 170107 || | ||||| ||||| || | || ||| || |||||| ||| ||||||||||| Sbjct 4333131 GTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAACAACTCG 4333190 Query 170108 CGTTCACTGCACTTCTTCCTCGCAGCATGGCCTG 170141 ||| || |||||| | || || ||||||| Sbjct 4333191 ACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224 >seq1024 Length=717246 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 170246 AACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGT 170305 ||||| ||||| || | ||||||||||| ||||| |||||||| ||||| || ||| Sbjct 156788 AACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGT 156847 Query 170306 AATGCTCACAACTTCCCTCTCGACCT 170331 |||||||||||||||||||| ||||| Sbjct 156848 AATGCTCACAACTTCCCTCTAGACCT 156873 >seq1042 Length=564079 Score = 87.8 bits (96), Expect = 2e-12 Identities = 97/126 (77%), Gaps = 4/126 (3%) Strand=Plus/Minus Query 169791 TTGGGCAAGG--GTCGTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACTA 169848 |||| ||||| || ||| || || | |||||||| || ||||| || || || ||| Sbjct 550862 TTGGTCAAGGAAGT-GTT-TCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTT 550805 Query 169849 CATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACCCCTTCCACATGCTTGGTGT 169908 |||| | || ||||| ||||||||||||||||| |||||||| || ||||| | ||| | Sbjct 550804 CATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTT 550745 Query 169909 TGCGGG 169914 ||| || Sbjct 550744 TGCTGG 550739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592144665397680